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SampleID RNA_SampleID SeqID oldID_comment Inoculum Condition P_and_M_available Proteome_available_samesample Study accession Sample accession Secondary sample accession Sample title Study description
LNU-AXX9-Si00-CnA-P-B1 LNU-AXX9-Si00-CnA-P-B1-R1 P3251_101 axBL_A1 AXX Cn NA no PRJEB30001 SAMEA5138289 ERS2922656 LNU-AXX9-Si00-CnA-P-B1-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX9-Si00-CnA-P-B2 LNU-AXX9-Si00-CnA-P-B2-R1 P3251_102 axBL_A2 AXX Cn NA no PRJEB30001 SAMEA5138290 ERS2922657 LNU-AXX9-Si00-CnA-P-B2-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX9-Si00-CnA-P-B3 LNU-AXX9-Si00-CnA-P-B3-R1 P3251_106 axBL_L3 AXX Cn NA no PRJEB30001 SAMEA5138291 ERS2922658 LNU-AXX9-Si00-CnA-P-B3-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-LXX9-Si00-CnA-P-B1 LNU-LXX9-Si00-CnA-P-B1-R1 P3251_104 axBL_L1 LXX Cn NA yes PRJEB21842 SAMEA104168070 ERS1827088 LNU-LXX9-Si00-CnA-P-B1-R1 RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries).
LNU-LXX9-Si00-CnA-P-B6 LNU-LXX9-Si00-CnA-P-B6-R1 P3251_105 axBL_L2 LXX Cn NA yes PRJEB21842 SAMEA104168073 ERS1827091 LNU-LXX9-Si00-CnA-P-B6-R1 RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries).
LNU-LXX9-Si00-CnA-P-B7 LNU-LXX9-Si00-CnA-P-B7-R1 P3251_103 axBL_A3 LXX Cn NA yes PRJEB21842 SAMEA104168069 ERS1827087 LNU-LXX9-Si00-CnA-P-B7-R1 RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries).
LNU-SXX9-Si00-CnA-P-B5 LNU-SXX9-Si00-CnA-P-B5-R1 P3251_107 axBL_S1 SXX Cn NA no PRJEB30001 SAMEA5138292 ERS2922659 LNU-SXX9-Si00-CnA-P-B5-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-SXX9-Si00-CnA-P-B4 LNU-SXX9-Si00-CnA-P-B4-R1 P3251_108 axBL_S2 SXX Cn NA yes PRJEB30001 SAMEA5138293 ERS2922660 LNU-SXX9-Si00-CnA-P-B4-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-SXX9-Si00-CnA-P-B7 LNU-SXX9-Si00-CnA-P-B7-R2 P3251_109 axBL_S3 SXX Cn NA no PRJEB30001 SAMEA5138294 ERS2922661 LNU-SXX9-Si00-CnA-P-B7-R2 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX9-Si00-14A-M-B LNU-AXX-Si00-14A-M-B-R1 P6161_101 NA AXX M NA no PRJEB30001 SAMEA5138268 ERS2922635 LNU-AXX-Si00-14A-M-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX9-Si00-14D-M-B LNU-AXX-Si00-14D-M-B-R1 P6161_102 NA AXX M NA yes PRJEB30001 SAMEA5138269 ERS2922636 LNU-AXX-Si00-14D-M-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX9-Si00-14B-P-B LNU-AXX-Si00-14B-P-B-R1 P6161_103 NA AXX P NA yes PRJEB30001 SAMEA5138270 ERS2922637 LNU-AXX-Si00-14B-P-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX9-Si00-14C-P-B LNU-AXX-Si00-14C-P-B-R1 P6161_104 NA AXX P NA no PRJEB30001 SAMEA5138271 ERS2922638 LNU-AXX-Si00-14C-P-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-LXX9-Si00-14B-P-B LNU-LXX-Si00-14B-P-B-R1 P6161_105 NA LXX P NA yes PRJEB21842 SAMEA104168071 ERS1827089 LNU-LXX-Si00-14B-P-R1 RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries).
LNU-LXX9-Si00-14C-P-B LNU-LXX-Si00-14C-P-B-R1 P6161_106 NA LXX P NA yes PRJEB21842 SAMEA104168072 ERS1827090 LNU-LXX-Si00-14C-P-R1 RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries).
LNU-SXX9-Si00-14B-P-B LNU-SXX-Si00-14B-P-B-R1 P6161_107 NA SXX P NA yes PRJEB30001 SAMEA5138272 ERS2922639 LNU-SXX-Si00-14B-P-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-SXX9-Si00-14D-P-B LNU-SXX-Si00-14D-P-B-R1 P6161_108 NA SXX P NA no PRJEB30001 SAMEA5138273 ERS2922640 LNU-SXX-Si00-14D-P-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-SLX8-PC20-7B-M-B UDE-SLX8-Pc20-7B-M-B-R1 P6161_109 NA SLX M NA no PRJEB27815 SAMEA4796602 ERS2616525 UDE-SLX8-Pc20-7B-M-R1 RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
UDE-SLX8-PC20-7C-M-B UDE-SLX8-Pc20-7C-M-B-R1 P6161_110 NA SLX M yes no PRJEB27815 SAMEA4796603 ERS2616526 UDE-SLX8-Pc20-7C-M-R1 RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
UDE-SLX8-PC20-7C-M-B UDE-SLX8-Pc20-7C-M-B-R2 P6161_111 elution replicate to R1 SLX M NA no PRJEB27815 SAMEA4796604 ERS2616527 UDE-SLX8-Pc20-7C-M-R2 RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
UDE-SLX8-PC20-7C-P-B UDE-SLX8-Pc20-7C-P-B-R1 P6161_112 NA SLX P yes no PRJEB27815 SAMEA4796605 ERS2616528 UDE-SLX8-Pc20-7C-P-R1 RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
UDE-SLX8-Pc20-7G-P-B UDE-SLX8-Pc20-7G-P-B-R1 P6161_113 NA SLX P NA no PRJEB27815 SAMEA4796606 ERS2616529 UDE-SLX8-Pc20-7G-P-R1 RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
UDE-SAL8-PC20-7A-M-B UDE-SAL8-Pc20-7A-M-B-R2 P6161_114 NA SAL M NA no PRJEB30001 SAMEA5138274 ERS2922641 UDE-SAL8-Pc20-7A-M-R2 RNAseq SysMetEx, mixed and single species cultures
UDE-SAL8-Pc20-7O-P-B UDE-SAL8-Pc20-7O-P-B-R1 P6161_116 NA SAL P NA yes PRJEB30001 SAMEA5138275 ERS2922642 UDE-SAL8-Pc20-7O-P-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-SAL8-Pc20-7Q-P-B UDE-SAL8-Pc20-7Q-P-B-R1 P6161_117 NA SAL P NA yes PRJEB30001 SAMEA5138276 ERS2922643 UDE-SAL8-Pc20-7Q-P-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-SAX8-Pc20-7J-P-B UDE-SAX8-Pc20-7J-P-B-R1 P6161_120 NA SAX P NA yes PRJEB30001 SAMEA5138277 ERS2922644 UDE-SAX8-Pc20-7J-P-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-SAX8-Pc20-7G-P-B UDE-SAX8-Pc20-7G-P-B-R1 P6161_121 NA SAX P NA no PRJEB30001 SAMEA5138278 ERS2922645 UDE-SAX8-Pc20-7G-P-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX-Si00-CnB-P-B6 LNU-AXX-Si00-CnB-P-B6-R1 P6161_122 re-seq with rRNA depletion AXX Cn NA yes PRJEB30001 SAMEA5138279 ERS2922646 LNU-AXX-Si00-CnB-P-B6-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX-Si00-CnB-P-B7 LNU-AXX-Si00-CnB-P-B7-R1 P6161_123 re-seq with rRNA depletion AXX Cn NA yes PRJEB30001 SAMEA5138280 ERS2922647 LNU-AXX-Si00-CnB-P-B7-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AXX-Si00-CnB-P-B8 LNU-AXX-Si00-CnB-P-B8-R1 P6161_124 re-seq with rRNA depletion AXX Cn NA yes PRJEB30001 SAMEA5138281 ERS2922648 LNU-AXX-Si00-CnB-P-B8-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-ALX9-Si00-14A-P-B LNU-ALX9-Si00-14A-P-B-R1 P9658_101 SC leaching paper ALX P NA no PRJEB27534 SAMEA4771242 ERS2591198 LNU-ALX9-Si00-14A-P-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-ALX9-Si00-14C-P-B LNU-ALX9-Si00-14C-P-B-R1 P9658_102 SC leaching paper ALX P NA no PRJEB27534 SAMEA4771243 ERS2591199 LNU-ALX9-Si00-14C-P-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-ALX9-Si00-14D-P-B LNU-ALX9-Si00-14D-P-B-R1 P9658_103 SC leaching paper ALX P NA no PRJEB27534 SAMEA4771244 ERS2591200 LNU-ALX9-Si00-14D-P-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-ASL9-Si00-14B-P-B LNU-ASL9-Si00-14B-P-B-R1 P9658_104 SC leaching paper ASL P NA no PRJEB27534 SAMEA4771245 ERS2591201 LNU-ASL9-Si00-14B-P-B-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-ASL9-Si00-14C-P-B LNU-ASL9-Si00-14C-P-B-R1 P9658_105 SC leaching paper ASL P NA no PRJEB27534 SAMEA4771246 ERS2591202 LNU-ASL9-Si00-14C-P-B-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-ASL9-Si00-14D-P-B LNU-ASL-Si00-14D-P-B-R1 P9658_106 SC leaching paper ASL P NA no PRJEB27534 SAMEA4771247 ERS2591203 LNU-ASL-Si00-14D-P-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-ASX9-Si00-14A-P-B LNU-ASX9-Si00-14A-P-B-R1 P9658_107 SC leaching paper ASX P NA yes PRJEB27534 SAMEA4771248 ERS2591204 LNU-ASX9-Si00-14A-P-B-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-ASX9-Si00-14B-P-B LNU-ASX9-Si00-14B-P-B-R1 P9658_108 SC leaching paper ASX P NA yes PRJEB27534 SAMEA4771249 ERS2591205 LNU-ASX9-Si00-14B-P-B-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-ASX9-Si00-14C-P-B LNU-ASX9-Si00-14C-P-B-R1 P9658_109 SC leaching paper ASX P NA yes PRJEB27534 SAMEA4771250 ERS2591206 LNU-ASX9-Si00-14C-P-B-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-LSX9-Si00-14A-P-B LNU-LSX9-Si00-14A-P-B-R1 P9658_110 SC leaching paper LSX P NA yes PRJEB27534 SAMEA4771251 ERS2591207 LNU-LSX9-Si00-14A-P-B-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-LSX9-Si00-14B-P-B LNU-LSX9-Si00-14B-P-B-R1 P9658_111 SC leaching paper LSX P NA yes PRJEB27534 SAMEA4771252 ERS2591208 LNU-LSX9-Si00-14B-P-B-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
LNU-LSX9-Si00-14D-P-B LNU-LSX9-Si00-14D-P-B-R1 P9658_112 SC leaching paper LSX P NA yes PRJEB27534 SAMEA4771253 ERS2591209 LNU-LSX9-Si00-14D-P-R1 RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments.
UDE-SLX7-Pc20-7B-P-B UDE-SLX7-Pc20-7B-P-B-R1 P10302_101 NA SLX P NA no PRJEB27815 SAMEA4796598 ERS2616521 UDE-SLX7-Pc20-7B-P-B-R1 RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
UDE-SLX7-Pc20-7C-P-B UDE-SLX7-Pc20-7C-P-B-R1 P10302_102 different from above 7C SLX P NA no PRJEB27815 SAMEA4796599 ERS2616522 UDE-SLX7-Pc20-7C-P-B-R1 RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
LNU-LXX9-Si00-E-M-B LNU-LXX9-Si00-E-M-B-R1 P10302_103 NA LXX M NA yes PRJEB27815 SAMEA4796600 ERS2616523 LNU-LXX9-Si00-E-M-B RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
LNU-LXX9-Si00-F-M-B LNU-LXX9-Si00-F-M-B-R1 P10302_104 NA LXX M NA yes PRJEB27815 SAMEA4796601 ERS2616524 LNU-LXX9-Si00-F-M-B RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures
UDE-SAL7-Pc20-7M-P-B UDE-SAL7-Pc20-7M-P-B-R1 P10302_105 NA SAL P NA yes PRJEB30001 SAMEA5138282 ERS2922649 UDE-SAL7-Pc20-7M-P-B-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-AXX7-Si00-7D-P-B UDE-AXX7-Si00-7D-P-B-R1 P10302_106 NA AXX P NA yes PRJEB30001 SAMEA5138283 ERS2922650 UDE-AXX7-Si00-7D-P-B-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-AXX7-Si00-7B-P-B UDE-AXX7-Si00-7B-P-B-R1 P10302_107 NA AXX P NA yes PRJEB30001 SAMEA5138284 ERS2922651 UDE-AXX7-Si00-7B-P-B-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-SXX7-Si00-7C-P-B UDE-SXX7-Si00-7C-P-B-R1 P10302_108 NA SXX P NA yes PRJEB30001 SAMEA5138285 ERS2922652 UDE-SXX7-Si00-7C-P-B-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-SXX7-Si00-7B-P-B UDE-SXX7-Si00-7B-P-B-R1 P10302_109 NA SXX P NA yes PRJEB30001 SAMEA5138286 ERS2922653 UDE-SXX7-Si00-7B-P-B-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-SAX-2-P-B UDE-SAX-Pc20-X-P-B-R1 P10302_110 UDE-SAX-2-P-B-R1 modified ID SAX P NA yes PRJEB30001 SAMEA5138287 ERS2922654 UDE-SAX-Pc20-X-P-B-R1 RNAseq SysMetEx, mixed and single species cultures
UDE-SAX-3-P-B UDE-SAX-Pc20-Y-P-B-R1 P10302_111 UDE-SAX-3-P-B-R1 modified ID SAX P NA yes PRJEB30001 SAMEA5138288 ERS2922655 UDE-SAX-Pc20-Y-P-B-R1 RNAseq SysMetEx, mixed and single species cultures
LNU-AAS-Si00-A-P-B LNU-AAS-Si00-A-P-B-R1 NA NA ASX P NA yes PRJEB29980 SAMEA5137511 ERS2921879 LNU-AAS-Si00-A-P-B-R RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing
LNU-AAS-Si00-B-P-B LNU-AAS-Si00-B-P-B-R1 NA NA ASX P NA yes PRJEB29980 SAMEA5137512 ERS2921880 LNU-AAS-Si00-B-P-B-R RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing
LNU-AAS-Si00-C-P-B LNU-AAS-Si00-C-P-B-R1 NA NA ASX P NA yes PRJEB29980 SAMEA5137513 ERS2921881 LNU-AAS-Si00-C-P-B-R RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing
LNU-AAS-Si00-F-P-B LNU-AAS-Si00-F-P-B-R1 NA NA ASX P NA yes PRJEB29980 SAMEA5137514 ERS2921882 LNU-AAS-Si00-F-P-B-R RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing
LNU-ASS-Si00-A-P-B LNU-ASS-Si00-A-P-B-R1 NA NA ASX P NA yes PRJEB29980 SAMEA5137515 ERS2921883 LNU-ASS-Si00-A-P-B-R RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing
LNU-ASS-Si00-B-P-B LNU-ASS-Si00-B-P-B-R1 NA NA ASX P NA yes PRJEB29980 SAMEA5137516 ERS2921884 LNU-ASS-Si00-B-P-B-R RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing
LNU-ASS-Si00-E-P-B LNU-ASS-Si00-E-P-B-R1 NA NA ASX P NA yes PRJEB29980 SAMEA5137517 ERS2921885 LNU-ASS-Si00-E-P-B-R RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing
LNU-ASS-Si00-F-P-B LNU-ASS-Si00-F-P-B-R1 NA NA ASX P NA yes PRJEB29980 SAMEA5137518 ERS2921886 LNU-ASS-Si00-F-P-B-R RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing


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