Selected Cell
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RNAseq_samples
Proteomics_Samples
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| SampleID | RNA_SampleID | SeqID | oldID_comment | Inoculum | Condition | P_and_M_available | Proteome_available_samesample | Study accession | Sample accession | Secondary sample accession | Sample title | Study description |
| LNU-AXX9-Si00-CnA-P-B1 | LNU-AXX9-Si00-CnA-P-B1-R1 | P3251_101 | axBL_A1 | AXX | Cn | NA | no | PRJEB30001 | SAMEA5138289 | ERS2922656 | LNU-AXX9-Si00-CnA-P-B1-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX9-Si00-CnA-P-B2 | LNU-AXX9-Si00-CnA-P-B2-R1 | P3251_102 | axBL_A2 | AXX | Cn | NA | no | PRJEB30001 | SAMEA5138290 | ERS2922657 | LNU-AXX9-Si00-CnA-P-B2-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX9-Si00-CnA-P-B3 | LNU-AXX9-Si00-CnA-P-B3-R1 | P3251_106 | axBL_L3 | AXX | Cn | NA | no | PRJEB30001 | SAMEA5138291 | ERS2922658 | LNU-AXX9-Si00-CnA-P-B3-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-LXX9-Si00-CnA-P-B1 | LNU-LXX9-Si00-CnA-P-B1-R1 | P3251_104 | axBL_L1 | LXX | Cn | NA | yes | PRJEB21842 | SAMEA104168070 | ERS1827088 | LNU-LXX9-Si00-CnA-P-B1-R1 | RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries). |
| LNU-LXX9-Si00-CnA-P-B6 | LNU-LXX9-Si00-CnA-P-B6-R1 | P3251_105 | axBL_L2 | LXX | Cn | NA | yes | PRJEB21842 | SAMEA104168073 | ERS1827091 | LNU-LXX9-Si00-CnA-P-B6-R1 | RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries). |
| LNU-LXX9-Si00-CnA-P-B7 | LNU-LXX9-Si00-CnA-P-B7-R1 | P3251_103 | axBL_A3 | LXX | Cn | NA | yes | PRJEB21842 | SAMEA104168069 | ERS1827087 | LNU-LXX9-Si00-CnA-P-B7-R1 | RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries). |
| LNU-SXX9-Si00-CnA-P-B5 | LNU-SXX9-Si00-CnA-P-B5-R1 | P3251_107 | axBL_S1 | SXX | Cn | NA | no | PRJEB30001 | SAMEA5138292 | ERS2922659 | LNU-SXX9-Si00-CnA-P-B5-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-SXX9-Si00-CnA-P-B4 | LNU-SXX9-Si00-CnA-P-B4-R1 | P3251_108 | axBL_S2 | SXX | Cn | NA | yes | PRJEB30001 | SAMEA5138293 | ERS2922660 | LNU-SXX9-Si00-CnA-P-B4-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-SXX9-Si00-CnA-P-B7 | LNU-SXX9-Si00-CnA-P-B7-R2 | P3251_109 | axBL_S3 | SXX | Cn | NA | no | PRJEB30001 | SAMEA5138294 | ERS2922661 | LNU-SXX9-Si00-CnA-P-B7-R2 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX9-Si00-14A-M-B | LNU-AXX-Si00-14A-M-B-R1 | P6161_101 | NA | AXX | M | NA | no | PRJEB30001 | SAMEA5138268 | ERS2922635 | LNU-AXX-Si00-14A-M-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX9-Si00-14D-M-B | LNU-AXX-Si00-14D-M-B-R1 | P6161_102 | NA | AXX | M | NA | yes | PRJEB30001 | SAMEA5138269 | ERS2922636 | LNU-AXX-Si00-14D-M-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX9-Si00-14B-P-B | LNU-AXX-Si00-14B-P-B-R1 | P6161_103 | NA | AXX | P | NA | yes | PRJEB30001 | SAMEA5138270 | ERS2922637 | LNU-AXX-Si00-14B-P-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX9-Si00-14C-P-B | LNU-AXX-Si00-14C-P-B-R1 | P6161_104 | NA | AXX | P | NA | no | PRJEB30001 | SAMEA5138271 | ERS2922638 | LNU-AXX-Si00-14C-P-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-LXX9-Si00-14B-P-B | LNU-LXX-Si00-14B-P-B-R1 | P6161_105 | NA | LXX | P | NA | yes | PRJEB21842 | SAMEA104168071 | ERS1827089 | LNU-LXX-Si00-14B-P-R1 | RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries). |
| LNU-LXX9-Si00-14C-P-B | LNU-LXX-Si00-14C-P-B-R1 | P6161_106 | NA | LXX | P | NA | yes | PRJEB21842 | SAMEA104168072 | ERS1827090 | LNU-LXX-Si00-14C-P-R1 | RNA sequencing for L.ferriphilum cultures.Samples from continuous culture, no rRNA depleted libraries (Illumina Trueseq 3 stranded)Samples from batch cultures with chalcopyrite (rRNA depleted libraries). |
| LNU-SXX9-Si00-14B-P-B | LNU-SXX-Si00-14B-P-B-R1 | P6161_107 | NA | SXX | P | NA | yes | PRJEB30001 | SAMEA5138272 | ERS2922639 | LNU-SXX-Si00-14B-P-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-SXX9-Si00-14D-P-B | LNU-SXX-Si00-14D-P-B-R1 | P6161_108 | NA | SXX | P | NA | no | PRJEB30001 | SAMEA5138273 | ERS2922640 | LNU-SXX-Si00-14D-P-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SLX8-PC20-7B-M-B | UDE-SLX8-Pc20-7B-M-B-R1 | P6161_109 | NA | SLX | M | NA | no | PRJEB27815 | SAMEA4796602 | ERS2616525 | UDE-SLX8-Pc20-7B-M-R1 | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| UDE-SLX8-PC20-7C-M-B | UDE-SLX8-Pc20-7C-M-B-R1 | P6161_110 | NA | SLX | M | yes | no | PRJEB27815 | SAMEA4796603 | ERS2616526 | UDE-SLX8-Pc20-7C-M-R1 | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| UDE-SLX8-PC20-7C-M-B | UDE-SLX8-Pc20-7C-M-B-R2 | P6161_111 | elution replicate to R1 | SLX | M | NA | no | PRJEB27815 | SAMEA4796604 | ERS2616527 | UDE-SLX8-Pc20-7C-M-R2 | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| UDE-SLX8-PC20-7C-P-B | UDE-SLX8-Pc20-7C-P-B-R1 | P6161_112 | NA | SLX | P | yes | no | PRJEB27815 | SAMEA4796605 | ERS2616528 | UDE-SLX8-Pc20-7C-P-R1 | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| UDE-SLX8-Pc20-7G-P-B | UDE-SLX8-Pc20-7G-P-B-R1 | P6161_113 | NA | SLX | P | NA | no | PRJEB27815 | SAMEA4796606 | ERS2616529 | UDE-SLX8-Pc20-7G-P-R1 | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| UDE-SAL8-PC20-7A-M-B | UDE-SAL8-Pc20-7A-M-B-R2 | P6161_114 | NA | SAL | M | NA | no | PRJEB30001 | SAMEA5138274 | ERS2922641 | UDE-SAL8-Pc20-7A-M-R2 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SAL8-Pc20-7O-P-B | UDE-SAL8-Pc20-7O-P-B-R1 | P6161_116 | NA | SAL | P | NA | yes | PRJEB30001 | SAMEA5138275 | ERS2922642 | UDE-SAL8-Pc20-7O-P-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SAL8-Pc20-7Q-P-B | UDE-SAL8-Pc20-7Q-P-B-R1 | P6161_117 | NA | SAL | P | NA | yes | PRJEB30001 | SAMEA5138276 | ERS2922643 | UDE-SAL8-Pc20-7Q-P-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SAX8-Pc20-7J-P-B | UDE-SAX8-Pc20-7J-P-B-R1 | P6161_120 | NA | SAX | P | NA | yes | PRJEB30001 | SAMEA5138277 | ERS2922644 | UDE-SAX8-Pc20-7J-P-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SAX8-Pc20-7G-P-B | UDE-SAX8-Pc20-7G-P-B-R1 | P6161_121 | NA | SAX | P | NA | no | PRJEB30001 | SAMEA5138278 | ERS2922645 | UDE-SAX8-Pc20-7G-P-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX-Si00-CnB-P-B6 | LNU-AXX-Si00-CnB-P-B6-R1 | P6161_122 | re-seq with rRNA depletion | AXX | Cn | NA | yes | PRJEB30001 | SAMEA5138279 | ERS2922646 | LNU-AXX-Si00-CnB-P-B6-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX-Si00-CnB-P-B7 | LNU-AXX-Si00-CnB-P-B7-R1 | P6161_123 | re-seq with rRNA depletion | AXX | Cn | NA | yes | PRJEB30001 | SAMEA5138280 | ERS2922647 | LNU-AXX-Si00-CnB-P-B7-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AXX-Si00-CnB-P-B8 | LNU-AXX-Si00-CnB-P-B8-R1 | P6161_124 | re-seq with rRNA depletion | AXX | Cn | NA | yes | PRJEB30001 | SAMEA5138281 | ERS2922648 | LNU-AXX-Si00-CnB-P-B8-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-ALX9-Si00-14A-P-B | LNU-ALX9-Si00-14A-P-B-R1 | P9658_101 | SC leaching paper | ALX | P | NA | no | PRJEB27534 | SAMEA4771242 | ERS2591198 | LNU-ALX9-Si00-14A-P-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-ALX9-Si00-14C-P-B | LNU-ALX9-Si00-14C-P-B-R1 | P9658_102 | SC leaching paper | ALX | P | NA | no | PRJEB27534 | SAMEA4771243 | ERS2591199 | LNU-ALX9-Si00-14C-P-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-ALX9-Si00-14D-P-B | LNU-ALX9-Si00-14D-P-B-R1 | P9658_103 | SC leaching paper | ALX | P | NA | no | PRJEB27534 | SAMEA4771244 | ERS2591200 | LNU-ALX9-Si00-14D-P-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-ASL9-Si00-14B-P-B | LNU-ASL9-Si00-14B-P-B-R1 | P9658_104 | SC leaching paper | ASL | P | NA | no | PRJEB27534 | SAMEA4771245 | ERS2591201 | LNU-ASL9-Si00-14B-P-B-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-ASL9-Si00-14C-P-B | LNU-ASL9-Si00-14C-P-B-R1 | P9658_105 | SC leaching paper | ASL | P | NA | no | PRJEB27534 | SAMEA4771246 | ERS2591202 | LNU-ASL9-Si00-14C-P-B-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-ASL9-Si00-14D-P-B | LNU-ASL-Si00-14D-P-B-R1 | P9658_106 | SC leaching paper | ASL | P | NA | no | PRJEB27534 | SAMEA4771247 | ERS2591203 | LNU-ASL-Si00-14D-P-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-ASX9-Si00-14A-P-B | LNU-ASX9-Si00-14A-P-B-R1 | P9658_107 | SC leaching paper | ASX | P | NA | yes | PRJEB27534 | SAMEA4771248 | ERS2591204 | LNU-ASX9-Si00-14A-P-B-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-ASX9-Si00-14B-P-B | LNU-ASX9-Si00-14B-P-B-R1 | P9658_108 | SC leaching paper | ASX | P | NA | yes | PRJEB27534 | SAMEA4771249 | ERS2591205 | LNU-ASX9-Si00-14B-P-B-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-ASX9-Si00-14C-P-B | LNU-ASX9-Si00-14C-P-B-R1 | P9658_109 | SC leaching paper | ASX | P | NA | yes | PRJEB27534 | SAMEA4771250 | ERS2591206 | LNU-ASX9-Si00-14C-P-B-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-LSX9-Si00-14A-P-B | LNU-LSX9-Si00-14A-P-B-R1 | P9658_110 | SC leaching paper | LSX | P | NA | yes | PRJEB27534 | SAMEA4771251 | ERS2591207 | LNU-LSX9-Si00-14A-P-B-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-LSX9-Si00-14B-P-B | LNU-LSX9-Si00-14B-P-B-R1 | P9658_111 | SC leaching paper | LSX | P | NA | yes | PRJEB27534 | SAMEA4771252 | ERS2591208 | LNU-LSX9-Si00-14B-P-B-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| LNU-LSX9-Si00-14D-P-B | LNU-LSX9-Si00-14D-P-B-R1 | P9658_112 | SC leaching paper | LSX | P | NA | yes | PRJEB27534 | SAMEA4771253 | ERS2591209 | LNU-LSX9-Si00-14D-P-R1 | RNAseq of binary and tertiary mixtures of microorganisms (A.caldus=A, L.ferriphilum =L, S.thermosulfidooxidans=S) growing on chalcopyrite concentrate. Redox potential and leaching rates were assessed and RNA was extracted from the cultures at the end of the experiments. |
| UDE-SLX7-Pc20-7B-P-B | UDE-SLX7-Pc20-7B-P-B-R1 | P10302_101 | NA | SLX | P | NA | no | PRJEB27815 | SAMEA4796598 | ERS2616521 | UDE-SLX7-Pc20-7B-P-B-R1 | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| UDE-SLX7-Pc20-7C-P-B | UDE-SLX7-Pc20-7C-P-B-R1 | P10302_102 | different from above 7C | SLX | P | NA | no | PRJEB27815 | SAMEA4796599 | ERS2616522 | UDE-SLX7-Pc20-7C-P-B-R1 | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| LNU-LXX9-Si00-E-M-B | LNU-LXX9-Si00-E-M-B-R1 | P10302_103 | NA | LXX | M | NA | yes | PRJEB27815 | SAMEA4796600 | ERS2616523 | LNU-LXX9-Si00-E-M-B | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| LNU-LXX9-Si00-F-M-B | LNU-LXX9-Si00-F-M-B-R1 | P10302_104 | NA | LXX | M | NA | yes | PRJEB27815 | SAMEA4796601 | ERS2616524 | LNU-LXX9-Si00-F-M-B | RNAseq reads (rRNA depletion, cDNA library, stranded paired-end illumina sequencing) for chalcopyrite bioleaching cultures |
| UDE-SAL7-Pc20-7M-P-B | UDE-SAL7-Pc20-7M-P-B-R1 | P10302_105 | NA | SAL | P | NA | yes | PRJEB30001 | SAMEA5138282 | ERS2922649 | UDE-SAL7-Pc20-7M-P-B-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-AXX7-Si00-7D-P-B | UDE-AXX7-Si00-7D-P-B-R1 | P10302_106 | NA | AXX | P | NA | yes | PRJEB30001 | SAMEA5138283 | ERS2922650 | UDE-AXX7-Si00-7D-P-B-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-AXX7-Si00-7B-P-B | UDE-AXX7-Si00-7B-P-B-R1 | P10302_107 | NA | AXX | P | NA | yes | PRJEB30001 | SAMEA5138284 | ERS2922651 | UDE-AXX7-Si00-7B-P-B-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SXX7-Si00-7C-P-B | UDE-SXX7-Si00-7C-P-B-R1 | P10302_108 | NA | SXX | P | NA | yes | PRJEB30001 | SAMEA5138285 | ERS2922652 | UDE-SXX7-Si00-7C-P-B-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SXX7-Si00-7B-P-B | UDE-SXX7-Si00-7B-P-B-R1 | P10302_109 | NA | SXX | P | NA | yes | PRJEB30001 | SAMEA5138286 | ERS2922653 | UDE-SXX7-Si00-7B-P-B-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SAX-2-P-B | UDE-SAX-Pc20-X-P-B-R1 | P10302_110 | UDE-SAX-2-P-B-R1 modified ID | SAX | P | NA | yes | PRJEB30001 | SAMEA5138287 | ERS2922654 | UDE-SAX-Pc20-X-P-B-R1 | RNAseq SysMetEx, mixed and single species cultures |
| UDE-SAX-3-P-B | UDE-SAX-Pc20-Y-P-B-R1 | P10302_111 | UDE-SAX-3-P-B-R1 modified ID | SAX | P | NA | yes | PRJEB30001 | SAMEA5138288 | ERS2922655 | UDE-SAX-Pc20-Y-P-B-R1 | RNAseq SysMetEx, mixed and single species cultures |
| LNU-AAS-Si00-A-P-B | LNU-AAS-Si00-A-P-B-R1 | NA | NA | ASX | P | NA | yes | PRJEB29980 | SAMEA5137511 | ERS2921879 | LNU-AAS-Si00-A-P-B-R | RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing |
| LNU-AAS-Si00-B-P-B | LNU-AAS-Si00-B-P-B-R1 | NA | NA | ASX | P | NA | yes | PRJEB29980 | SAMEA5137512 | ERS2921880 | LNU-AAS-Si00-B-P-B-R | RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing |
| LNU-AAS-Si00-C-P-B | LNU-AAS-Si00-C-P-B-R1 | NA | NA | ASX | P | NA | yes | PRJEB29980 | SAMEA5137513 | ERS2921881 | LNU-AAS-Si00-C-P-B-R | RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing |
| LNU-AAS-Si00-F-P-B | LNU-AAS-Si00-F-P-B-R1 | NA | NA | ASX | P | NA | yes | PRJEB29980 | SAMEA5137514 | ERS2921882 | LNU-AAS-Si00-F-P-B-R | RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing |
| LNU-ASS-Si00-A-P-B | LNU-ASS-Si00-A-P-B-R1 | NA | NA | ASX | P | NA | yes | PRJEB29980 | SAMEA5137515 | ERS2921883 | LNU-ASS-Si00-A-P-B-R | RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing |
| LNU-ASS-Si00-B-P-B | LNU-ASS-Si00-B-P-B-R1 | NA | NA | ASX | P | NA | yes | PRJEB29980 | SAMEA5137516 | ERS2921884 | LNU-ASS-Si00-B-P-B-R | RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing |
| LNU-ASS-Si00-E-P-B | LNU-ASS-Si00-E-P-B-R1 | NA | NA | ASX | P | NA | yes | PRJEB29980 | SAMEA5137517 | ERS2921885 | LNU-ASS-Si00-E-P-B-R | RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing |
| LNU-ASS-Si00-F-P-B | LNU-ASS-Si00-F-P-B-R1 | NA | NA | ASX | P | NA | yes | PRJEB29980 | SAMEA5137518 | ERS2921886 | LNU-ASS-Si00-F-P-B-R | RNAseq of binary cultures of S. thermosulfidooxidans and A. caldus with varied inoculum sizing |
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| SampleID | Prot_SampleID | Condition | Inoculum | project_name | project_accession | comments | |||
| LNU-LXX9-Si00-14B-P-B | LNU-LXX9-Si00-14B-P-B-Pr | P | LXX | Sysmetex proteome data for Leptospirillum ferriphilum planktonic growth | PXD012783 | NA | |||
| LNU-LXX9-Si00-14C-P-B | LNU-LXX9-Si00-14C-P-B-Pr | P | LXX | Sysmetex proteome data for Leptospirillum ferriphilum planktonic growth | PXD012783 | NA | |||
| LNU-LXX9-Si00-14D-P-B | LNU-LXX9-Si00-14D-P-B-Pr | P | LXX | Sysmetex proteome data for Leptospirillum ferriphilum planktonic growth | PXD012783 | NA | |||
| LNU-LXX9-Si00-J-P-B | LNU-LXX9-Si00-J-P-B-Pr_2uL | P | LXX | Sysmetex proteome data for Leptospirillum ferriphilum planktonic growth | PXD012783 | NA | |||
| UDE-LXX7-Si00-7C-P-B | UDE-LXX7-Si00-7C-P-B-Pr_2uL | P | LXX | Sysmetex proteome data for Leptospirillum ferriphilum planktonic growth | PXD012783 | NA | |||
| LNU-SXX9-Si00-14A-P-B | LNU-SXX9-14A-P-B-Pr | P | SXX | Sysmetex proteome data for Sulfobacillus thermosulfidooxidans planktonic growth | PXD011921 | NA | |||
| LNU-SXX9-Si00-14B-P-B | LNU-SXX9-14B-P-B-Pr | P | SXX | Sysmetex proteome data for Sulfobacillus thermosulfidooxidans planktonic growth | PXD011921 | NA | |||
| UDE-SXX7-Si00-7B-P-B | UDE-SXX7-Si00-7B-P-B-Pr_2uL | P | SXX | Sysmetex proteome data for Sulfobacillus thermosulfidooxidans planktonic growth | PXD011921 | NA | |||
| UDE-SXX7-Si00-7C-P-B | UDE-SXX7-Si00-7C-P-B-Pr_2uL | P | SXX | Sysmetex proteome data for Sulfobacillus thermosulfidooxidans planktonic growth | PXD011921 | NA | |||
| UDE-AXX7-Si00-7D-P-B | UDE-AXX7-Si00-7D-P-B-Pr_2uL | P | AXX | Sysmetex proteome data for Acidithiobacillus caldus planktonic growth | PXD011863 | NA | |||
| UDE-AXX7-Si00-7B-P-B | UDE-AXX7-Si00-7B-P-B-Pr_2uL | P | AXX | Sysmetex proteome data for Acidithiobacillus caldus planktonic growth | PXD011863 | techn. Replicate? | |||
| UDE-AXX7-Si00-7B-P-B | UDE-AXX7-Si00-7B-P-B-Pr | P | AXX | Sysmetex proteome data for Acidithiobacillus caldus planktonic growth | PXD011863 | techn. Replicate? | |||
| UDE-SAL8-Pc20-7O-M-B | UDE-SAL8-7O-M-B-Pr-2 | M | SAL | Sysmetex proteome data for SAL mineral growth | PXD011503 | techn. Replicate? | |||
| UDE-SAL8-Pc20-7O-M-B | UDE-SAL8-7O-M-B-Pr | M | SAL | Sysmetex proteome data for SAL mineral growth | PXD011503 | techn. Replicate? | |||
| UDE-SAL7-Pc20-7M-P-B | UDE-SAL7-Pc20-7M-P-B-Pr_2uL | M | SAL | Sysmetex proteome data for SAL mineral growth | PXD011503 | NA | |||
| UDE-SAL7-Pc20-7A-M-B | UDE-SAL7-A7-M-B-Pr | M | SAL | Sysmetex proteome data for SAL mineral growth | PXD011503 | NA | |||
| UDE-SAL7-Pc20-7C-M-B | UDE-SAL7-7C-M-B-Pr | M | SAL | Sysmetex proteome data for SAL mineral growth | PXD011503 | NA | |||
| UDE-SAL7-Pc20-7A-M-B | UDE-SAL7-7A-M-B-Pr | M | SAL | Sysmetex proteome data for SAL mineral growth | PXD011503 | measured twice or wrong ID for either 7A or A7? | |||
| UDE-SLX8-Pc20-7L-M-B | UDE-SLX8-7L-M-B-Pr | M | SLX | Sysmetex proteome data for SLX mineral growth | PXD011504 | NA | |||
| UDE-SLX7-Pc20-7A-M-B | UDE-SLX7-7A-M-M-Pr | M | SLX | Sysmetex proteome data for SLX mineral growth | PXD011504 | NA | |||
| LNU-LXX9-Si00-F-M-B | LNU-LXX9-Si00-F-M-B_2uL | M | LXX | Sysmetex proteome data for Leptospirillum ferriphilum mineral growth | PXD012780 | NA | |||
| LNU-LXX9-Si00-E-M-B | LNU-LXX9-Si00-E-M-B_2uL | M | LXX | Sysmetex proteome data for Leptospirillum ferriphilum mineral growth | PXD012780 | NA | |||
| LNU-LXX9-Si00-14D-M-B | LNU-LXX9-Si00-14D-M-B-Pr | M | LXX | Sysmetex proteome data for Leptospirillum ferriphilum mineral growth | PXD012780 | NA | |||
| LNU-LXX9-Si00-14B-M-B | LNU-LXX9-Si00-14B-M-B-Pr | M | LXX | Sysmetex proteome data for Leptospirillum ferriphilum mineral growth | PXD012780 | NA | |||
| LNU-ASX9-Si00-14A-P-B | LNU-ASX9-Si00-14A-P-B-Pr | P | ASX | Sysmetex proteome data comparison for ASX and LSX planctonic growth | PXD011502 | NA | |||
| LNU-ASX9-Si00-14B-P-B | LNU-ASX9-Si00-14B-P-B-Pr | P | ASX | Sysmetex proteome data comparison for ASX and LSX planctonic growth | PXD011502 | NA | |||
| LNU-ASX9-Si00-14C-P-B | LNU-ASX9-Si00-14C-P-B-Pr | P | ASX | Sysmetex proteome data comparison for ASX and LSX planctonic growth | PXD011502 | NA | |||
| LNU-ASX9-Si00-14D-P-B | LNU-ASX9-Si00-14D-P-B-Pr | P | ASX | Sysmetex proteome data comparison for ASX and LSX planctonic growth | PXD011502 | NA | |||
| LNU-LSX9-Si00-14A-P-B | LNU-LSX9-Si00-14A-P-B-Pr | P | LSX | Sysmetex proteome data comparison for ASX and LSX planctonic growth | PXD011502 | NA | |||
| LNU-LSX9-Si00-14B-P-B | LNU-LSX9-Si00-14B-P-B-Pr | P | LSX | Sysmetex proteome data comparison for ASX and LSX planctonic growth | PXD011502 | NA | |||
| LNU-LSX9-Si00-14C-P-B | LNU-LSX9-Si00-14C-P-B-Pr | P | LSX | Sysmetex proteome data comparison for ASX and LSX planctonic growth | PXD011502 | NA | |||
| LNU-LSX9-Si00-14D-P-B | LNU-LSX9-Si00-14D-P-B-Pr | P | LSX | Sysmetex proteome data comparison for ASX and LSX planctonic growth | PXD011502 | NA | |||
| UDE-SAL8-Pc20-7E-P-B | UDE-SAL8-7E-P-B-Pr | P | SAL | Sysmetex proteome data for SAL planctonic growth | PXD011540 | NA | |||
| UDE-SAL8-Pc20-7K-P-B | UDE-SAL8-Pc20-7K-P-B-Pr | P | SAL | Sysmetex proteome data for SAL planctonic growth | PXD011540 | NA | |||
| UDE-SAL8-Pc20-7O-P-B | UDE-SAL8-Pc20-7O-P-B-Pr | P | SAL | Sysmetex proteome data for SAL planctonic growth | PXD011540 | NA | |||
| UDE-SAL8-Pc20-7Q-P-B | UDE-SAL8-Pc20-7Q-P-B-Pr | P | SAL | Sysmetex proteome data for SAL planctonic growth | PXD011540 | NA | |||
| UDE-SAX8-Pc20-7J-P-B | LNU-SAX8-Pc20-7J-P-B-Pr | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | UDE instead of LNU | |||
| UDE-SAX8-Pc20-7L-P-B | LNU-SAX8-Pc20-7L-P-B-Pr | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | UDE instead of LNU | |||
| LNU-SAX9-Pc10-A-P-B | LNU-SAX9-Pc10-A-P-B-Pr_2uL | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| UDE-SAX8-Pc20-7I-P-B | UDE SAX8-Pc20-7I-P-B-Pr | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| UDE-SAX7-Pc20-7D-P-B | UDE-SAX7-Pc20-7D-P-B-Pr_2uL | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| UDE-SAX7-Pc20-14S-P-B | UDE-SAX7-Pc20-14S-P-B-Pr_2uL | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| UDE-SAX7-Pc20-14V-P-B | UDE-SAX7-Pc20-14V-P-B-Pr_2uL | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| UDE-SAX-2-P-B | UDE-SAX-Pc20-2-P-B-Pr_2uL | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| UDE-SAX-3-P-B | UDE-SAX-Pc20-3-P-B-Pr_2uL | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| UDE-SAX-4-P-B | UDE-SAX-Pc20-4-P-B-Pr_2uL | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| UDE-SAX-5-P-B | UDE-SAX-Pc20-5-P-B-Pr_2uL | P | SAX | Sysmetex proteome data for SAX planctonic growth | PXD011506 | NA | |||
| LNU-AXX-Si00-CnB-P-B6 | LNU-AXX-Si00-CnB-P-B6ST-Pr_180min | Cn | AXX | Sysmetex proteome data for Acidithiobacillus caldus in continuous culture | PXD011507 | NA | |||
| LNU-AXX-Si00-CnB-P-B7 | LNU-AXX-Si00-CnB-P-B7ST-Pr_180min | Cn | AXX | Sysmetex proteome data for Acidithiobacillus caldus in continuous culture | PXD011507 | NA | |||
| LNU-AXX-Si00-CnB-P-B8 | LNU-AXX-Si00-CnB-P-B8ST-Pr_180min | Cn | AXX | Sysmetex proteome data for Acidithiobacillus caldus in continuous culture | PXD011507 | NA | |||
| LNU-AAS-Si00-A-P-B | LNU-AAS-Si00-A-P-B-Pr | P | ASX | Sysmetex proteome data for AAS | PXD011508 | NA | |||
| LNU-AAS-Si00-B-P-B | LNU-AAS-Si00-B-P-B-Pr | P | ASX | Sysmetex proteome data for AAS | PXD011508 | NA | |||
| LNU-AAS-Si00-C-P-B | LNU-AAS-Si00-C-P-B-Pr | P | ASX | Sysmetex proteome data for AAS | PXD011508 | NA | |||
| LNU-AAS-Si00-D-P-B | LNU-AAS-Si00-D-P-B-Pr | P | ASX | Sysmetex proteome data for AAS | PXD011508 | NA | |||
| LNU-AAS-Si00-E-P-B | LNU-AAS-Si00-E-P-B-Pr | P | ASX | Sysmetex proteome data for AAS | PXD011508 | NA | |||
| LNU-AAS-Si00-F-P-B | LNU-AAS-Si00-F-P-B-Pr | P | ASX | Sysmetex proteome data for AAS | PXD011508 | NA | |||
| LNU-AAS-Si-A-M-B | LNU-AAS-Si-A-M-B-Pr_2 | P | ASX | Sysmetex proteome data for AAS | PXD011508 | NA | |||
| LNU-AAS-Si-E-M-B | LNU-AAS-Si-E-M-B-Pr_3 | P | ASX | Sysmetex proteome data for AAS | PXD011508 | NA | |||
| LNU-ASS-Si00-A-P-B | LNU-ASS-Si00-A-P-B-Pr_180707235233 | P | ASX | Sysmetex proteome data for ASS | PXD011509 | NA | |||
| LNU-ASS-Si00-B-P-B | LNU-ASS-Si00-B-P-B-Pr_180708035852 | P | ASX | Sysmetex proteome data for ASS | PXD011509 | NA | |||
| LNU-ASS-Si00-C-P-B | LNU-ASS-Si00-C-P-B-Pr_180708080509 | P | ASX | Sysmetex proteome data for ASS | PXD011509 | NA | |||
| LNU-ASS-Si00-D-P-B | LNU-ASS-Si00-D-P-B-Pr_180708121126 | P | ASX | Sysmetex proteome data for ASS | PXD011509 | NA | |||
| LNU-ASS-Si00-E-P-B | LNU-ASS-Si00-E-P-B-Pr_180708161747 | P | ASX | Sysmetex proteome data for ASS | PXD011509 | NA | |||
| LNU-ASS-Si00-F-P-B | LNU-ASS-Si00-F-P-B-Pr_180708202402 | P | ASX | Sysmetex proteome data for ASS | PXD011509 | NA | |||
| LNU-ASS-Si-A-M-B | LNU-ASS-Si-A-M-B-Pr_2_180710031909 | P | ASX | Sysmetex proteome data for ASS | PXD011509 | NA | |||
| LNU-ASS-Si-C-M-B | LNU-ASS-Si-C-M-B-Pr_2_180710113146 | P | ASX | Sysmetex proteome data for ASS | PXD011509 | NA |
