EnzymeML

This is a workspace for the EnzymeML consortium

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Frank Bergmann

Projects: de.NBI-SysBio, EnzymeML, COMBINE Multicellular Modelling

Institutions: University of Heidelberg

https://orcid.org/0000-0001-5553-4702

Patrick Buchholz

Projects: EnzymeML

Institutions: University of Stuttgart

https://orcid.org/0000-0001-5967-3777

Martin Golebiewski

Projects: FAIRDOM, Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, MS_DILI, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training, EnzymeML, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", FAIRDOM Community Workers, COVID-19 Disease Map, COVID-19 related studies and tools in Germany

Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

https://orcid.org/0000-0002-8683-7084

Expertise: Data Management, Databases, Biochemistry, Bioinformatics, Systems Biology, standards, Data Integration

Tools: Computational Systems Biology, Data Management, Databases, Ontologies, Workflows, Kinetic Modeling

Data management and standardization expert for systems biology and systems medicine, responsible for the data management user requirements and user contacts within the German LiSyM network (Liver Systems Medicine: http://lisym.org/) and associated to the FAIRDOM team.
Involved in different standardization initiatives and committees, i.e. COMBINE (http://co.mbine.org), ISO/TC 276 Biotechnology (https://www.iso.org/committee/4514241.html), European COST action CHARME (http://www.cost-charme.eu) and
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Mike Hucka

Projects: EnzymeML

Institutions: Caltech

https://orcid.org/0000-0001-9105-5960

Carsten Kettner

Projects: EnzymeML

Institutions: Beilstein Institut

https://orcid.org/0000-0002-8697-6842

Expertise: Biochemistry

Tools: Data Management, standards, Databases

Project manager of STRENDA and MIRAGE

Jens Lohmann

Projects: EnzymeML

Institutions: University of Stuttgart

Wolfgang Müller

Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, de.NBI-SysBio, Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Kinetics on the move - Workshop 2016, Example use cases, SBEpo - Systems Biology of Erythropoietin, FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, EnzymeML, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, MS_DILI, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", COMBINE Multicellular Modelling, COVID-19 Disease Map, COVID-19 related studies and tools in Germany

Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

https://orcid.org/0000-0002-4980-3512

Expertise: Software Engineering, Information Retrieval, Human-Computer Interaction, Distributed Systems

Tools: Data Management, Databases, Java, Spring, Grails web development framework, Ruby on Rails, Javascript, SABIO-RK database, Python, SEEK

I am group leader of the SDBV (Scientific Databases and Visualisation) group at the HITS gGmbH, the Heidelberg Institute for Theoretical Studies.

I am interested in finding data. Starting with my master's thesis I have always worked on how to store data in a way that you can find it, and how to make sense out of data that has been stored.

Within FAIRDOM I find interesting to help people to store their data in a way that they make sense even after years.

Juergen Pleiss

Projects: EnzymeML, Simulation Foundries, CML for thermophysical properties of mixtures

Institutions: University of Stuttgart

https://orcid.org/0000-0003-1045-8202

Maja Rey

Within the de.NBI project my functions in the de.NBI-SysBio node comprise content curation, requirements elicitation, and community engagement for the users of biochemical reaction kinetics database SABIO-RK as well as of the data management platform SEEK.

Santiago Schnell