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Programme
SysMO356
Independent Projects19
ERASysAPP15
e:Bio11
FAIRDOM11
de.NBI Systems Biology Service Center (de.NBI-SysBio)8
Era CoBioTech8
Disease Maps7
SARCHI: Mechanistic modelling of health and epidemiology5
HUMET5
Model repository for M4 (Make Me My Model) clients of ISBE5
The Digital Salmon4
LiSyM - Systems Medicine of the Liver4
e:med3
Systems Biology Programme3
German Association for Medical Informatics, Biometry and Epidemiology (GMDS)3
DFG founded projects3
Journals2
NIBSys2
COMBINE (Computational Modeling in Biology Network)2
Innate immunity2
BlueBio ERA-NET COFUND2
Drug development for neglected parasitic diseases2
FAIR Biocatalysis2
EU Projects2
MS_DILI1
BioZEment1
SAFE-Aqua1
DLN - OXYMOD1
Auromega1
ERNEST - European Research Network on Signal Transduction1
nfdi4health - German National Research Data Infrastructure for Personal Health Data1
Hallmarks of cancer 1
ISBE.NL service programme1
Thermodynamics and kinetics for Biology1
M-era.Net 3D4D21
NL-Bioimaging: FAIR-DM 1
More...
Project
PSYSMO52
BaCell-SysMO40
SysMO-LAB40
TRANSLUCENT35
STREAM35
COSMIC31
SUMO29
KOSMOBAC27
SulfoSys26
SCaRAB21
MOSES20
SilicoTryp15
SysMO DB13
FAIRDOM10
SulfoSys - Biotec9
SYSTERACT9
Noisy-Strep8
COVID-19 Disease Map7
Kinetics on the move - Workshop 20166
SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation6
ICYSB 2015 - International Practical Course in Systems Biology5
FAIRDOM user meeting5
HUMET Startup5
INBioPharm5
EraCoBiotech 2 nd call proposal preparation5
BESTER5
IMOMESIC4
GenoSysFat4
de.NBI-SysBio4
DigiSal4
Example use cases4
FAIRDOM & LiSyM & de.NBI Data Structuring Training4
Whole body modelling of glucose metabolism in malaria patients3
MESI-STRAT3
INCOME3
HOTSOLUTE3
SynBio4Flav3
PoLiMeR - Polymers in the Liver: Metabolism and Regulation3
GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"3
SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers3
FAIRDOM Community Workers3
Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population3
Modelling COVID-19 epidemics3
SDBV/HITS3
SysMO Funders2
SysMilk2
ExtremoPharm2
ZucAt2
Molecular Systems Biology2
Early Metabolic Injury (LiSyM-EMI - Pillar I)2
Chronic Liver Disease Progression (LiSyM-DP - Pillar II)2
Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)2
LiSyM Core Infrastructure and Management (LiSyM-PD)2
Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)2
Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)2
Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)2
The Hedgehog Signalling Pathway (LiSyM-JGMMS)2
Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)2
SBEpo - Systems Biology of Erythropoietin2
EmPowerPutida2
Make Me My Model2
Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)2
COMBINE Multicellular Modelling2
Sustainable co-production2
Multiscale modelling of state transitions in the host-microbiome-brain network2
Yeast glycolytic oscillations2
INDIE - Biotechnological production of sustainable indole2
EnzymeML2
Computational pathway design for biotechnological applications2
AquaHealth (ERA-BlueBio)2
NMTrypI - New Medicines for Trypanosomatidic Infections2
SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke2
CC-TOP2
BioCreative VII2
Glucose metabolism in cancer cell lines2
MESI-STRAT Review2
MESI-Review 20242
Manchester Institute for Biotechnology1
MetApp1
WineSys1
iRhythmics1
ROBUSTYEAST1
ErasysApp Funders1
Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW)1
Service to University of Lisbon (Portugal) with respect to their CFTR maturation model (Active NOW)1
Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW)1
Service to Universidade Católica Portugues with respect to their Molecular Insight into Autism Spectrum Disorder (ASD) model (Active NOW)1
Service to Slovenia with respect to their Protease signaling network in neurodegeneration model (Active NOW)1
Service to University of Duisburg- Essen (Germany): with respect to their The Yin-Yang of Metabolism; Endometatoxicity (YYME) model (Active NOW)1
Service to Sheffield University (UK): with respect to Mitochondrial perfect adaptation model (Active NOW)1
Service to Sanquin (Amsterdam): with respect to Modelling of acute and chronic inflammation (Prospective)1
Service to Munich (Germany): with respect toCharged peptide to charged membrane binding model (Prospective)1
MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine1
Training Hunfeld1
MS_DILI1
BioZEment 2.01
SAFE-Aqua1
OXYMOD1
ROS detailed model for MSB manucript1
Steroid biosynthesis1
TRALAMINOL1
Extremophiles metabolsim1
Auromega1
OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation1
NAD COMPARTMENTATION1
Stress granules1
MIX-UP1
COVID-19 related studies and tools in Germany1
ERNEST Mapping Group Pilot Study1
nfdi4health - German National Research Data Infrastructure for Personal Health Data1
ModeleXchange initiative1
Consensus Hallmark Annotation1
Xenophiles Systems Biology1
Thermodynamics1
Non equilibrium thermodynamics1
Book on Thermodynamics, and kinetics1
Teaching Alien Biology1
Outdated material1
WP 3: Drug release kinetics study1
Project Coordination1
SDBV ephemeral data exchanges1
The BeeProject1
Fusion-fission-mitophagy1
EbN1 Systems Biology1
NL-Bioimaging FAIR Metadata Templates1
SABIO-VIS1
FAIR Functional Enrichment1
Stochastics and bursting1
More...
Institution
University of Groningen21
Manchester Centre for Integrative Systems Biology, University of Manchester18
University of Aberdeen16
University of Rostock14
University of Greifswald13
University of Amsterdam12
University of Heidelberg11
University of Sheffield11
Wageningen University & Research11
University of Warwick11
CSIC Madrid10
Heidelberg Institute for Theoretical Studies (HITS gGmbH)10
University of Braunschweig10
University of Stuttgart10
Helmholtz Centre for Infection Research Braunschweig9
Norwegian University of Science and Technology9
SINTEF9
VU University Amsterdam8
Norwegian University of Life Sciences8
Autonomous University of Barcelona7
Max Planck Institute for Dynamics of Complex Technical Systems7
University of Newcastle7
University of Nottingham7
University of Vienna7
University of Bonn6
University of Goettingen6
University of Manchester - Department of Computer Science6
Imperial College London5
Humboldt-Universität zu Berlin5
University of Erlangen-Nuernberg5
University of Ulm5
University of Glasgow5
University of Edinburgh5
Medical University Vienna4
University of Cordoba4
University of Dortmund4
University Duisburg-Essen4
Ludwig-Maximilians University of Munich4
Institute of Physiology Academy of Sciences3
Max-Planck-Institute of Biochemistry Martinsried3
University of Hannover3
University of Leiden3
University of Tuebingen3
University of Applied Sciences Koblenz, Rhein Ahr Campus3
University of Marburg3
Stellenbosch University3
CSIC Vigo2
INBIOTEC Leon2
University of Bergen2
University of Duesseldorf2
University of Essex2
University of Stellenbosch2
Queen's University Belfast2
eGene Biotechnologie GmbH2
Chalmers University of Technology2
Beuth University of Applied Sciences Berlin2
University of Cologne2
University of Tübingen2
CSIC2
CSIC Granada1
DSM Nutritional Products Ltd.1
University Medical Centre Groningen1
University of London UCL1
University of Stavanger1
Max-Planck-Institute for terrestrial Microbiology1
BBSRC1
Forschungszentrum Jülich1
Technical University of Denmark - Systems Biology1
Technical University of Munich1
University of Luxembourg1
Universitity Duisburg-Essen1
University of Hohenheim1
FAIRDOM User meeting1
Humboldt University Berlin1
Infrastructure Systems Biology Europe1
University of Innsbruck1
Luxembourg Centre for Systems Biomedicine (LCSB)1
Warsaw University of Technology1
Systems Biology Amsterdam1
LIACS1
More...
Location
Germany147
United Kingdom93
Netherlands50
Spain26
Norway26
Austria12
Czechia3
South Africa3
Sweden2
Switzerland1
Denmark1
Luxembourg1
Poland1
More...
Expertise
Microbiology52
Molecular Biology49
Biochemistry33
Mathematical modelling26
Systems Biology23
Bioinformatics21
Bacillus subtilis16
Genetics15
Transcriptomics14
Dynamics and Control of Biological Networks13
Molecular microbiology12
Data Management11
Parameter estimation11
carbon metabolism10
Metabolomics9
Proteomics8
stress responses7
functional protein expression7
regulation of gene expression7
Metabolic Engineering7
Bacterial Cell Biology7
Software Engineering6
dynamics of biological networks6
gene regulation6
Programming5
Mathematical modelling of biosystems and bioprocesses5
Cell physiology5
Regulatory Networks5
Biotechnology5
Microarray analysis4
Escherichia coli4
Mathematical and statistical modeling4
Physics4
Mathematics4
protein secretion4
Data analysis4
Nonlinear Dynamics4
Statistical Physics4
Mathematical modelling of biological systems4
Anaerobic Microbiology4
protein-protein interactions4
Clostridium4
carbon catabolite regulation in Gram positive bacteria4
Protein-DNA-interaction4
Glycolysis4
Databases3
Streptococcus pyogenes3
Reactor models3
rapid sampling experiments3
bioreactor models3
translational control of gene expression3
phenotypic heterogeneity3
bistability3
metal ion homeostasis3
membrane biology3
Escherichia coli Membrane protein Biochemistry3
Optimal experimental design3
Mathematical modeling3
Comparative Genomics3
Synthetic Biology3
Escherichia coli physiology3
bacterial metabolism3
bacterial gene regulation3
Bacterial metabolism | Metabolic engineering3
Metabolic Pathway Analysis and Engineering
Microbial Physiology
Modeling of Biological Networks
Industrial Systems Biotechnology
White Biotechnology
Strain and Process Optimization with bacteria3
Microarray experiments with prokaryotes3
Stoichiometric modelling3
computational structural biology3
quantative biology3
Data Integration3
Metabolic Networks3
Agent-based modelling2
Fermentation2
coupling metabolome and environome2
dynamics of biological networks.2
Statistically and biologically inspired optimization algorithms2
Deterministic modelling of gene regulation networks2
Gram positive bacteria (Bacillus2
Lactococcus2
sporulation2
Signal transduction in Gram-negative bacteria; Synthetic Microbiology; Single cell gene expression; Regulatory networks; biochemistry; histidine kinase/response regulator systems2
sensitivity analysis2
Dynamic optimization.2
Phylogenetics2
pH dependent dynamic shift experiments of continuous cultures2
Microbiology Biochemistry Molecular biology Genetics Enzymology Synthetic biology Regulatory metabolic networks2
Mathematical modelling; Nonlinear Dynamics; Time Series Analysis; network theory2
Clostridial Genetics2
protein-RNA interactions2
Signalling networks2
microscopy2
localisation studies2
E. coli2
Cellular biology of metals2
HPLC2
Microbiology/ Protein chemistry/ Molecular biology2
bacterial physiology2
X-ray crystallography
Structural biology2
Streptomyces2
Carbohydrate Metabolism of Archaea2
genetic engineering2
genome-scale modeling2
Streptococcus pneumoniae2
yeast2
Kinetic modelling2
standards2
semantics2
fungi2
Distributed Systems2
Cheminformatics1
Single Cell analysis1
Chip-chip1
Enterococcus faecalis1
Saccharomyces cerevisiae1
Sulfolobus solfataricus1
Information Retrieval1
Data analysis
Mathematical modelling
Bioinformatics
Systems biology1
translatome1
folding pathways1
Streptococcus)1
competence1
germination1
antimicrobial peptides1
C- and N- metabolism1
pathogens1
virulence factors1
protein-lipid interactions1
physicochemical properties of membranes1
Recombineering1
Dynamic modelling1
Phylogentics1
Database and data warehouse design1
High-throughput sequence analysis1
Time Series Analysis1
Pathogenesis1
Bacterial metabolism | Metabolic engineering | Quorum sensing (bacterial cell-cell communication) | Developmental processes in prokaryotes |1
Biophysics1
Mycoplasma pneumoniae1
Mathemical Modeling (in particular: Thermodynamic-Kinetic Modeling)1
model reduction1
reduced-order modeling1
fluorescence protein fusions (transcriptional and translational)1
Microarray Data Analysis1
Microbiology Biochemistry Molecular biology Genetics Regulatory networks Bacterial Cell Biology1
fluorescence protein fusions1
Genetics)1
computational economics.
Biology: molecular biology1
tissue biology1
social insects.1
staphylococcus aureus1
stress responses
Structural biology1
Salmonella1
Chemostats1
Flux analysis
Bioenergetics of growth1
Modelling of genetic and signalling networks1
biomechanics1
homogenisation.1
Microarray printing1
Database design1
Microbiology/Anaerobic Bacteria/Clostridia
Molecular Physiology
Stress responses1
stress adaptation of Gram-positiv bacteria1
application of functional genomics technologies in microbiology1
interaction analyses of transcriptional regulators1
analysis and preparation of diagnostic markers for Helicobacter pylori infections Yersiniosis and collagenoses1
Microbiology/ Protein chemistry/ Molecular Biology1
expression systems for pro- and eukayotes1
screening systems for nuclear transport and alternative splicing1
inducible mammalian cell death.1
Software Architecture1
biochemical1
Pseudomonas1
Prokaryotic genetics1
Reconstruction of metabolic pathways1
Regulation of carbohydrate metabolism1
Genome based Taxonomy1
Culture Collection1
Extremophiles1
chemical engineering1
enzyme kinetics1
Biology1
protein interactions1
molecular modeling1
molecular simulation1
Molecular Interactions1
biophysical chemistry1
genetics of archaea1
metagenomics1
cultivation of extremophiles1
REST1
Thermodynamics1
Machine Learning1
Ma1
Limit cycle oscillations1
mRNA1
overflow metabolism in Bacillus1
Genetic regulation1
Medical microbiology1
Food Microbiology1
Listeria monocytogenes1
network inference1
motif detection1
Trypanosoma brucei1
Streptococcus pneumoniae Molecular microbiology, Bacterial Cell Biology, Genetics1
Computational modelling1
metabolism1
sequencing1
VREs1
Cloud computing1
Phytopathology1
Human-Computer Interaction1
Analytical chemistry1
Data curation1
Agile development1
Docker1
Archaeal physiology1
Hyperthermophiles1
Thermoacidohiles1
Curation1
Ontology1
Computational Biology1
Data Modelling1
Kinetics1
More...
Tool
Matlab31
Transcriptomics27
Molecular Biology22
Biochemistry and protein analysis22
Microbiology21
Computational and theoretical biology21
Fermentation21
ODE20
Molecular biology techniques (RNA/DNA/Protein)19
Microarray analysis17
Genetic modification15
Computational Systems Biology14
Mathematica13
Dynamic modelling13
Proteomics (2D-PAGE)11
Biochemistry10
Metabolomics10
Chromatography10
Proteomics9
SBML9
Stochastic models9
Genetics8
Bioinformatics8
Copasi8
R8
Fluorecence based reporter gene analyses/single cell analyses8
qRT-PCR8
Data Management7
Python7
linux7
Genomics6
Databases6
Java6
differential algebraic equations6
continuous cultivation6
Fluorescence and confocal microscopy6
molecular biological techniques (RNA/DNA techniques6
Mass spectrometry (LC-MS/MS)6
Genetic analysis5
Model organisms5
Partial differential equations5
Perl5
stimulus response experiments5
fluorescence spectroscopy5
quantitative western blot analysis5
Deterministic models5
HPLC5
Cell culture5
Spectroscopy and structural analysis4
Web services4
PCR4
Ruby on Rails4
Material balance based modeling4
Enzyme assay4
data modeling4
C programming4
MySQL4
Molecular biology techniques (RNA/DNA)4
time lapse microscopy4
2-D Gel Electrphoresis4
HTML4
Bioconductor Packages in R4
microbiology techniques4
Parameter estimation4
Cell biology3
Single Cell analysis3
Workflows3
Chip-chip3
Taverna3
SQL3
evaluation of process dynamics3
Protein chemical methods (protein overproduction3
enzymatic analyses3
mutant strain generation3
quantitative western blot analyses3
XPPAUT3
Membrane protein biochemistry3
DNA technology RNA technology Protein analysis Fermentation Mutagenesis3
Metabolic Engineering3
GC and LC analysis of metabolites3
Chemostat culture3
Mutant and Strain Construction3
Enzyme assays3
reporter gene analyses3
Western blot analyses3
stochastic methods3
DNA3
analysis of functional genomics data3
interaction analysis techniques especially SPR measurements3
enzyme kinetics3
semantic web3
Javascript3
SEEK3
Algebraic equations2
Linear equations2
JWS Online2
rtPCR2
qtPCR2
Mass spectrometry2
Ruby2
Ontologies2
PHP2
DIVA2
quantitative Western analyses)2
qPCR2
Northern analyses)2
northern blot analysis2
including:- Dynamic modelling- Parameter estimation- Optimal experimental design- Dynamic optimization2
Biochemistry of substrate transport. molecular biological techniques (RNA/DNA techniques analyses of transport across cell membranes heterologous expression of transporters2
Chemical cross-linking2
Site-directed mutagenesis2
transcriptional analysis (Northern blots2
Optimal experimental design2
Proteomics (Glycoproteins)2
Flux balance analysis2
BioMart2
Comparative Genomics2
GC and LC analysis of metabolites | Analysis of signal molecules | Handling of anaerobic bacteria |2
SubtiWiki2
protein-DNA interactions; gel shifts; footprints; in vitro transcription protein ligan interactions2
absolute quantification2
Flow cytometry2
Immunofluorescence2
molecular biological techniques (RNA/DNA techniques)2
protein interaction studies2
In silico Metabolic Network Analysis2
fed-batch cultivation2
RNA / DNA Techniques2
bacterial chemostat culture2
spectroscopy2
site-directed and random mutagenesis2
Mutant and Strain Construction;
RNA / DNA Techniques;
RT-RealTime-PCR;
2D-Gels;
Metabolite Analysis;
Bioreactor Experiments;
Flow Cyometry;
Microscopy;
Single Cell analysis2
Chemostats2
Proteins2
Gaschromatographic analysis2
gel-based and gel-free proteomics2
Statistical tools2
shotgun proteomics2
in vivo crosslinking2
PIPSA2
SYCAMORE2
fortran2
transcription analysis2
NMR2
Perl programming2
RNA interference2
protein purification2
phage techniques2
GC and LC/MS analysis of metabolites2
COBRA toolbox2
Cell and tissue culture1
Isolation purification and separation1
Pharmacology and toxicology1
Spring1
semanticSBML1
MIRIAM1
ProMOT1
J2EE1
pulsed - FRAP1
purification1
molecular biological techniques (RNA/DNA techniques
analyses of transport across cell membranes
heterologous expression of transporters1
cultivation1
Biochemistry of substrate transport. molecular biological techniques (RNA/DNA techniquesanalyses of transport across cell membranesheterologous expression of transporters1
FRAP1
including:
- Dynamic modelling
- Parameter estimation
- Optimal experimental design
- Dynamic optimization1
Fluorescence and confocal microscopy
FRAP/FLIP1
FACS1
genomic array footprinting1
gene regulation1
The Membrane Enzymology group focuses on the molecular mechanisms of transport and signalling across biological membranes. In other words: How do molecules permeate biological membranes and how at the level of protein molecules are environmental signals s1
engineering principles and approaches from molecular biology and synthetic chemistry are applied. Confocal microscopy and various spectroscopic methods are used to analyze processes at the single cell or even single molecule level.1
PDE1
C programing1
quantitative RT-PCR); quantitative Western blot analysis; protein purification; reconstitution of membrane-integrated proteins; Biochemistry of substrate transport; Fluorecence based reporter gene analyses/single cell analyses1
surface plasmon resonance spectroscopy; site-directed spin labeling and EPR analysis;1
Dynamic optimization1
Systems Biology1
Time-lapse fluorescence microscopy
Flow cytometry1
EnsEMBL1
XML1
Phylogenetics1
methods of nonlinear time series analysis1
programming in C1
site-directed spin labeling and EPR spectroscopy1
isothermal titration calorimetry1
Biophysics1
SPINE1
bacterial two-hybrid system1
bacterial chamostat culture1
time-resolved microarray analysis1
GeLC-MS/MS1
metabolic labeling1
AQUA1
Logical modelling1
trac (wiki for data management)1
Fluxomics1
Fluorescence microscopy1
transposon mutagenesis1
Time-lapse fluorescence microscopy1
FLAME - Flexible Large-scale Agent-based Modelling Framework.1
GFP expression1
live cell array1
X-ray crystallography
electron microscopy
Biochemistry and protein analysis1
Bioreactor experiments/Fermentation (batch1
Chemostat)1
2D-PAGE1
plasmon resonance spectroscopy1
phage transduction1
Molecular biology techniques (DNA/Protein)1
Chemostat culture
GC and LC analysis of metabolites1
Multiscale and multiphysics modelling1
asymptotic methods1
network theory1
model reduction.1
RNA1
Gaschromatography1
Creation of Mutants1
stress experiments1
Groovy1
Protein1
Mutant construction1
2-D Gel Electrophoresis1
Chemostat cultures
Molecular biology techniques (RNA/DNA)
2-D Gel electrophoresis
Gaschromatography
Protein overexpression/purification1
molecular biology techniques1
molecular biological1
microbiological and immunological techniques1
surface plasmon resonance spectroscopy1
reporter gene analysis1
X-ray crystallographyelectron microscopyBiochemistry and protein analysis1
Maple1
Clustering softwares1
Pathway Tools1
affinity copurification/precipitation1
model prediction testing1
reverse engineering1
computational platform development1
metabolic netwlrk visualization1
gPROMS1
SABIO-RK http://sabio.villa-bosch.de/1
Molecular Dynamics1
molecular modeling and simulation1
Protein and RNA structure prediction1
Homology Modelling1
Programming in perl and tcl1
Grails web development framework1
iTRAQ for quantitative proteomics1
madonna1
genetics of hyperthermophilic archaea1
phylogeny1
CUDA1
GPU1
Thermodynamics1
Machine Learning1
SABIO-RK database1
in vitro transcription1
DNA affinity chromatography1
EMSA1
RightField1
PySCeS1
RNAseq1
Bayesian inference1
Physiology1
Protege1
Bioreactor experiments1
web development1
AWS1
Research Objects1
SABIO-RK1
MS imaging1
FT-ICR-MS1
Field Flow Fractionation1
Docker1
Kinetic Modeling1
Data Modelling1
More...
356
People found
Projects: Noisy-Strep
Institutions: University of Newcastle