// Created by libAntimony v2.9.4 model *U2019_3() // Compartments and Species: compartment cell; species cL_m in cell, cL in cell, cLmod in cell, cP in cell, cP9_m in cell; species cP9 in cell, cP7_m in cell, cP7 in cell, cP5_m in cell, cP5 in cell; species cT_m in cell, cT in cell, cE4_m in cell, cE4 in cell, cE3_m in cell; species cE3c in cell, cE3n in cell, cLUX_m in cell, cLUX in cell, cCOP1c in cell; species cCOP1n in cell, cCOP1d in cell, cEGc in cell, cEC in cell, cZTL in cell; species cZG in cell, cG_m in cell, cGc in cell, cGn in cell, cEGn in cell; species cE34 in cell; // Assignment Rules: cGn_tot := cGn + cEGn; // Reactions: cL_m_trscr: => cL_m; cell*(q1*L*cP*gml + (n1*gp7^2*g1^2/(gp7^2*g1^2 + (cP9 + cP7 + cP5 + cT)^2))*gml - (m1*L + m2*(1 - L))*cL_m); cL_m_trans: => cL; cell*(((p2 + p1*L)*cL_m/gml)*gl - m3*cL - p3*gl*cL^2/(cL^2 + gl^2*g3^2)); cL_mod_pro: => cLmod; cell*(p3*cL^2/(cL^2 + gl^2*g3^2) - m3*cLmod); cP_prod: => cP; cell*(p7*(1 - L)*(1 - cP) - m11*cP*L); cP9_m_trscr: => cP9_m; cell*(L*q3*cP*gm9 + (ge3*g8/(ge3*g8 + cEC))*(n4 + n7*cL^2/(cL^2 + gl^2*g9^2))*gm9 - m12*cP9_m); cP9_trans: => cP9; cell*(gp7*p8*cP9_m/gm9 - (m13 + m22*(1 - L))*cP9); cP7_m_trscr: => cP7_m; cell*((n8*(cL + gl*cLmod)^2/(gl^2*g10^2 + (cL + gl*cLmod)^2))*gm7 + (n9*cP9^2/(gp7^2*g11^2 + cP9^2))*gm7 - m14*cP7_m); cP7_trans: => cP7; cell*(gp7*p9*cP7_m/gm7 - (m15 + m23*(1 - L))*cP7); cP5_trscr: => cP5_m; cell*((n10*cLmod^2/(g12^2 + cLmod^2))*gm5 + (n11*cP7^2/(gp7^2*g13^2 + cP7^2))*gm5 - m16*cP5_m); cP5_trans: => cP5; cell*(gp7*p10*cP5_m/gm5 - (m17 + m24*(1 - L))*cP5); cT_m_trscr: => cT_m; cell*(((n2*ge3*g4/(ge3*g4 + cEC))*gl^2*g5^2/(gl^2*g5^2 + cL^2))*gmt - m5*cT_m); cT_trans: => cT; cell*(gp7*p4*cT_m/gmt - (m6 + m7*(1 - L))*cT*(cZTL*p5/ge3 + cZG/ge3) - m8*cT); cE4_trscr: => cE4_m; cell*(((n13*ge3*g2/(ge3*g2 + cEC))*gl^2*g6^2/(gl^2*g6^2 + cL^2))*gm4 - m34*cE4_m); cE4_trans: => cE4; cell*((p23*ge3*cE4_m/gm4 - m35*cE4 - (p25/ge3)*cE4*cE3n) + p21*cE34); cE3_trscr: => cE3_m; cell*((n3*gl^2*g16^2/(gl^2*g16^2 + cL^2))*gm3 - m26*cE3_m); cE3c_trans: => cE3c; cell*((p16*ge3*cE3_m/gm3 - m9*cE3c*cCOP1c - (p17/ge3)*cE3c*cGc - p19*cE3c) + p20*cE3n); cE3n_trans: => cE3n; cell*((p19*cE3c - p20*cE3n - (p17/ge3)*cE3n*cGn - m30*cE3n*cCOP1d - m29*cE3n*cCOP1n) + p21*cE34 - (p25/ge3)*cE4*cE3n); cLUX_trscr: => cLUX_m; cell*(((n13*ge3*g2/(ge3*g2 + cEC))*gl^2*g6^2/(gl^2*g6^2 + cL^2))*gm4 - m34*cLUX_m); cLUX_trans: => cLUX; cell*(p27*ge3*cLUX_m/gm4 - m39*cLUX - (p26/ge3)*cLUX*cE34); cCOP1c_prod: => cCOP1c; cell*(n5 - p6*cCOP1c - m27*cCOP1c*(1 + p15*L)); cCOP1n_trans: => cCOP1n; cell*(p6*cCOP1c - n6*L*cP*cCOP1n - n14*cCOP1n - m27*cCOP1n*(1 + p15*L)); cCOP1d_trans: => cCOP1d; cell*(n14*cCOP1n + n6*L*cP*cCOP1n - m31*(1 + m33*(1 - L))*cCOP1d); cEGc_prod: => cEGc; cell*(((p17/ge3)*cE3c*cGc - m9*cEGc*cCOP1c - p18*cEGc) + p31*cEGn); cEC_form: => cEC; cell*((p26/ge3)*cLUX*cE34 - m36*cEC*cCOP1n - m37*cEC*cCOP1d - m32*cEC*(1 + p24*L*cGn_tot^2/(ge3^2*g7^2 + cGn_tot^2))); cZTL_prod: => cZTL; cell*((ge3*p14 - (p12/ge3)*L*cZTL*cGc) + p13*cZG*(1 - L) - m20*cZTL); cZG_prod: => cZG; cell*((p12/ge3)*L*cZTL*cGc - p13*cZG*(1 - L) - m21*cZG); cG_m_trscr: => cG_m; cell*(L*q2*cP*gmg + ((n12*ge3*g14/(ge3*g14 + cEC))*gl^2*g15^2/(gl^2*g15^2 + cL^2))*gmg - m18*cG_m); cG_trans: => cGc; cell*(((p11*ge3*cG_m/gmg - (p12/ge3)*L*cZTL*cGc) + p13*cZG*(1 - L) - m19*cGc - (p17/ge3)*cE3c*cGc - p28*cGc) + p29*cGn); cGn_traspo: => cGn; cell*(p28*cGc - (p29 + m19 + (p17/ge3)*cE3n)*cGn); cE34_compl: => cE34; cell*((p25/ge3)*cE4*cE3n - ((p26/ge3)*cLUX + p21 + m37*cCOP1d + m36*cCOP1n)*cE34); cEGn_tranp: => cEGn; cell*(p18*cEGc + (p17/ge3)*cE3n*cGn - (m9*cCOP1n + m10*cCOP1d + p31)*cEGn); // Events: _E0: at ((time%24) >= 12) && (time < (24*11)): L = 0; _E1: at ((time%24) < 12) && (time < (24*11)): L = 1; _E2: at time >= (24*11): L = 1; // Species initializations: cL_m = 1.05129004396331*240.398303596736; cL = 19533.815351907; cLmod = 0.0741180321748198; cP = 1.9727214276094e-42; cP9_m = 0.0656063461084473*69.5228161344057; cP9 = 352.670068753059; cP7_m = 0.429686087062748*36.7151462664629; cP7 = 5874.98461353031; cP5_m = 0.778001394975754*10.8150058554228; cP5 = 12683.915100585; cT_m = 0.0928798167556545*98.7139376747197; cT = 14503.8464777465; cE4_m = 0.0949886368399*59.100196230293; cE4 = 9587.16883954953; cE3_m = 0.282857048667234*37.4270777712061; cE3c = 9212.3258871006; cE3n = 2488.53106770334; cLUX_m = 0.0949886368399*59.100196230293; cLUX = 49965.6879592234; cCOP1c = 0.23; cCOP1n = 0.276; cCOP1d = 0.0920000000003796; cEGc = 530.0490946533; cEC = 7883.15417251107; cZTL = 6323.48030604471; cZG = 18083.4053447161; cG_m = 0.096830093091897*71.2315112597985; cGc = 34.1473200515349; cGn = 107.773034646426; cEGn = 364.114536635838; cE34 = 4922.42671799023; // Compartment initializations: cell = 1; // Variable initializations: L = 1; q1 = 224.070236452074; gml = 1; n1 = 1012.37718630491; gp7 = 72532.2121212713; g1 = 0.0924989429194312; m1 = 0.472478224440627; m2 = 0.270383383879274; p2 = 0.00122878848822599; p1 = 0.000890384681341936; gl = 109962.840890357; m3 = 0.209726654834423; p3 = 0.138507260209719; g3 = 0.401907624866968; p7 = 0.3; m11 = 1; q3 = 175.758127101537; gm9 = 1; ge3 = 29717.820753307; g8 = 0.013727897692468; n4 = 3.79395856628938; n7 = 14.2167613360537; g9 = 0.303207630540409; m12 = 1.51872508902782; p8 = 0.00690982654847693; m13 = 0.500914464916436; m22 = 0.0624119331983405; n8 = 18.403678260775; g10 = 0.613888529345322; gm7 = 1; n9 = 5.88499980572144; g11 = 0.827141647779455; m14 = 0.440879974257324; p9 = 0.0180063039896456; m15 = 0.982634835562064; m23 = 1.48057704025775; n10 = 5.01512745875978; g12 = 0.153738014145348; gm5 = 1; n11 = 6.69496958196885; g13 = 1.11866877018643; m16 = 0.632510327340643; p10 = 0.0521883128509265; m17 = 0.606609704046493; m24 = 0.0766744701909765; n2 = 74.5202814722954; g4 = 0.015186421346016; g5 = 0.190782710296209; gmt = 1; m5 = 0.365603548533465; p4 = 0.00580761646795074; m6 = 0.106923346685408; m7 = 0.202204789877226; p5 = 10.5410689922583; m8 = 0.386558514560172; n13 = 123.397741207481; g2 = 0.0200396142598497; g6 = 0.222876410841046; gm4 = 1; m34 = 0.639825570593053; p23 = 0.00489292414588834; m35 = 0.247772032610646; p25 = 17.7324473475865; p21 = 2.65390547631073; n3 = 17.9030199538489; g16 = 0.255910593485932; gm3 = 1; m26 = 0.412244305031997; p16 = 0.0262187306980944; m9 = 5.23628610457024; p17 = 63.6643806479195; p19 = 1.69252446195173; p20 = 0.0857149842402559; m30 = 13.0722781787554; m29 = 15.4767161839369; p27 = 0.0262030071921937; m39 = 0.394230519151613; p26 = 0.179491414011742; n5 = 0.23; p6 = 0.6; m27 = 0.1; p15 = 3; n6 = 20; n14 = 0.1; m31 = 0.3; m33 = 13; p18 = 0.236910457951958; p31 = 0.140795715737152; m36 = 0.0988627559324387; m37 = 0.638671244532235; m32 = 0.17786749055661; p24 = 11.2645147978309; g7 = 0.199260140711394; p14 = 0.27147097156507; p12 = 30.4292560794357; p13 = 0.0765570658950953; m20 = 1.23924716050164; m21 = 0.0800304547984497; q2 = 149.393841965426; gmg = 1; n12 = 1047.3417892582; g14 = 0.00694586247895883; g15 = 0.384196561838963; m18 = 4.17528060369758; p11 = 0.0104348821303489; m19 = 1.18499836603551; p28 = 21.5197740727555; p29 = 0.305804164480483; m10 = 4.16475304417486; cEG = 0.00381490790681182; m4 = 0.2; // Other declarations: var L, cGn_tot; const cell, q1, gml, n1, gp7, g1, m1, m2, p2, p1, gl, m3, p3, g3, p7, m11; const q3, gm9, ge3, g8, n4, n7, g9, m12, p8, m13, m22, n8, g10, gm7, n9; const g11, m14, p9, m15, m23, n10, g12, gm5, n11, g13, m16, p10, m17, m24; const n2, g4, g5, gmt, m5, p4, m6, m7, p5, m8, n13, g2, g6, gm4, m34, p23; const m35, p25, p21, n3, g16, gm3, m26, p16, m9, p17, p19, p20, m30, m29; const p27, m39, p26, n5, p6, m27, p15, n6, n14, m31, m33, p18, p31, m36; const m37, m32, p24, g7, p14, p12, p13, m20, m21, q2, gmg, n12, g14, g15; const m18, p11, m19, p28, p29, m10, cEG, m4; // Unit definitions: unit substance = 1e-9 mole; unit extent = 1e-9 mole; unit time_unit = 3.6e3 second; unit area = metre^2; unit length = metre; unit volume = litre; // Display Names: substance is "nM (default)"; time_unit is "hour (default)"; end