model *P2011() // Compartments and Species: compartment compartment_; species cL_m in compartment_, cL in compartment_, cLmod in compartment_; species cP in compartment_, cP9_m in compartment_, cP9 in compartment_; species cP7_m in compartment_, cP7 in compartment_, cP5_m in compartment_; species cP5 in compartment_, cT_m in compartment_, cT in compartment_, cE4_m in compartment_; species cE4 in compartment_, cE3_m in compartment_, cE3 in compartment_; species cE3n in compartment_, cLUX_m in compartment_, cLUX in compartment_; species cCOP1c in compartment_, cCOP1n in compartment_, cCOP1d in compartment_; species cEG in compartment_, cEC in compartment_, cZTL in compartment_; species cZG in compartment_, cG_m in compartment_, cG in compartment_; cE34 := (p25*cE4*cE3n)/(p26*cLUX + p21 + m37*cCOP1d + m36*cCOP1n); cEGn := (p18*cEG + p17*cE3n*cG)/(m9*cCOP1n + m10*cCOP1d + p31); cGn := p28*cG/(p29+m19+p17*cE3n); cGn_t : = (cGn+cEGn); // Reactions: cL_m_trscr: => cL_m; compartment_*((q1*light*cP + n1*(g1^2/(g1^2 + (cP9 + cP7 + cP5 + cT)^2)))*gml - (m1*light + m2*(1 - light))*cL_m); cL_trsl: => cL; compartment_*(((p2 + p1*light)*cL_m)/gml - (m3*cL + (p3*cL^2)/(g3^2 + cL^2))); cL_modif: => cLmod; compartment_*((p3*cL^2)/(g3^2 + cL^2) - m4*cLmod); cP_trsl: => cP; compartment_*(p7*(1 - light)*(1 - cP) - m11*cP*light); cP9_m_trscr: => cP9_m; compartment_*((light*q3*cP + g8/(g8 + cEC)*(n4 + n7*(cL^2/(g9^2 + cL^2))))*gm9 - m12*cP9_m); cP9_trsl: => cP9; compartment_*((p8*cP9_m)/gm9 - (m13 + m22*(1 - light))*cP9); cP7_m_trscr: => cP7_m; compartment_*((n8*((cL + cLmod)^2/(g10^2 + (cL + cLmod)^2)) + n9*(cP9^2/(g11^2 + cP9^2)))*gm7 - m14*cP7_m); cP7_trsl: => cP7; compartment_*((p9*cP7_m)/gm7 - (m15 + m23*(1 - light))*cP7); cP5_m_trscr: => cP5_m; compartment_*((n10*(cLmod^2/(g12^2 + cLmod^2)) + n11*(cP7^2/(g13^2 + cP7^2)))*gm5 - m16*cP5_m); cP5_trsl: => cP5; compartment_*((p10*cP5_m)/gm5 - (m17 + m24*(1 - light))*cP5); cT_m_trscr: => cT_m; compartment_*(n2*(g4/(g4 + cEC))*(g5^2/(g5^2 + cL^2))*gmt - m5*cT_m); cT_trsl: => cT; compartment_*((p4*cT_m)/gmt - ((m6 + m7*(1 - light))*cT*(cZTL*p5 + cZG) + m8*cT)); cE4_m_trscr: => cE4_m; compartment_*(n13*(g2/(cEC + g2))*(g6^2/(cL^2 + g6^2))*gm4 - m34*cE4_m); cE4_trsl: => cE4; compartment_*((p23*cE4_m)/gm4 - ((m35*cE4 + p25*cE4*cE3n) - p21*cE34)); cE3_m_trscr: => cE3_m; compartment_*((n3*g16^2)/(cL^2 + g16^2)*gm3 - m26*cE3_m); cE3_trsl: => cE3; compartment_*(p16*cE3_m/gm3-m9*cE3*cCOP1c -p17*cE3*cG - p19*cE3 + p20*cE3n); cE3n_import: => cE3n; compartment_*(p19*cE3 - p20*cE3n -p17*cE3n*cGn -m30*cE3n*cCOP1d-m29*cE3n*cCOP1n+p21*cE34-p25*cE4*cE3n); cLUX_m_trscr: => cLUX_m; compartment_*(n13*(g2/(g2 + cEC))*(g6^2/(g6^2 + cL^2))*gm4- m34*cLUX_m); cLUX_trsl: => cLUX; compartment_*(p27*cLUX_m/gm4-m39*cLUX-p26*cLUX*cE34); cCOP1c_trsl: => cCOP1c; compartment_*(n5-p6*cCOP1c-m27*cCOP1c*(1 + p15*light)); cCOP1n_import: => cCOP1n; compartment_*(p6*cCOP1c-n6*light*cP*cCOP1n-n14*cCOP1n-m27*cCOP1n*(1+p15*light)); cCOP1d_import: => cCOP1d; compartment_*(n14*cCOP1n+n6*light*cP*cCOP1n-m31*(1+m33*(1-light))*cCOP1d); cEG_import: => cEG; compartment_*(p17*cE3*cG-m9*cEG*cCOP1c-p18*cEG+p31*cEGn); cEC_formation: => cEC; compartment_*(p26*cLUX*cE34-m36*cEC*cCOP1n-m37*cEC*cCOP1d-m32*cEC*(1+p24*light*cGn_t^2/(g7^2+cGn_t^2))); cZTL_prod: => cZTL; compartment_*(p14-p12*light*cZTL*cG+p13*cZG*(1-light)-m20*cZTL); cZG_prid: => cZG;compartment_*(p12*light*cZTL*cG-p13*cZG*(1-light)-m21*cZG); cG_m_trscr: => cG_m; compartment_*((light*q2*cP + n12*(g14/(g14 + cEC))*(g15^2/(cL^2 + g15^2)))*gmg-m18*cG_m); cG_trsl: => cG; compartment_*(p11*cG_m/gmg-p12*light*cZTL*cG+p13*cZG*(1-light)-m19*cG-p17*cE3*cG-p28*cG+p29*cGn); // Species initializations: cL_m = 1.05129004396331; cL = 0.539353584650681; cLmod = 0.0844581981958169; cP = 0.95639188403066; cP9_m = 0.0656063461084473; cP9 = 0.0241160376628207; cP7_m = 0.429686087062748; cP7 = 0.124970188459902; cP5_m = 0.0778001394975754; cP5 = 0.0682932086174468; cT_m = 0.0928798167556545; cT = 0.0413478697796226; cE4_m = 0.0949886368399; cE4 = 0.198218446414934; cE3_m = 0.282857048667234; cE3 = 0.143911609144162; cE3n = 0.0276005035594671; cLUX_m = 0.0949886368399; cLUX = 0.553663366668043; cCOP1c = 0.326927726336486; cCOP1n = 0.655890438841171; cCOP1d = 0.251171915182196; cEG = 0.00381490790681182; cEC = 0.0689905389413188; cZTL = 0.250995989453552; cZG = 0.0773224813669429; cG_m = 0.096830093091897; cG = 0.0191017500069211; // Compartment initializations: compartment_ = 1; // Variable initializations: q1 = 1.2; light = 1; n1 = 2.6; g1 = 0.1; gml = 1; m1 = 0.54; m2 = 0.24; p2 = 0.27; p1 = 0.13; m3 = 0.2; p3 = 0.1; g3 = 0.6; m4 = 0.2; p7 = 0.3; m11 = 1; q3 = 2.8; g8 = 0.01; n4 = 0.07; n7 = 0.2; g9 = 0.3; gm9 = 1; m12 = 1; p8 = 0.6; m13 = 0.32; m22 = 0.1; n8 = 0.5; g10 = 0.5; n9 = 0.2; g11 = 0.7; gm7 = 1; m14 = 0.4; p9 = 0.8; m15 = 0.7; m23 = 1.8; n10 = 0.4; g12 = 0.2; n11 = 0.6; g13 = 1; gm5 = 1; m16 = 0.5; p10 = 0.54; m17 = 0.5; m24 = 0.1; n2 = 0.64; g4 = 0.01; g5 = 0.15; gmt = 1; m5 = 0.3; p4 = 0.56; m6 = 0.3; m7 = 0.7; p5 = 4; m8 = 0.4; n13 = 1.3; g2 = 0.01; g6 = 0.3; gm4 = 1; m34 = 0.6; p23 = 0.37; m35 = 0.3; p25 = 8; p21 = 1; p26 = 0.3; m37 = 0.8; m36 = 0.1; n3 = 0.29; g16 = 0.3; gm3 = 1; m26 = 0.5; p16 = 0.62; m9 = 1.1; p19 = 1; p20 = 0.1; m29 = 5; m30 = 3; p17 = 4.8; p28 = 2; p29 = 0.1; m19 = 0.2; p27 = 0.8; m39 = 0.3; n5 = 0.23; m27 = 0.1; p15 = 3; p6 = 0.6; n6 = 20; n14 = 0.1; m31 = 0.3; m33 = 13; q2 = 1.56; n12 = 12.5; g14 = 0.004; g15 = 0.4; gmg = 1; m18 = 3.4; p11 = 0.51; p12 = 3.4; p13 = 0.1; p14 = 0.14; m20 = 0.6; m21 = 0.08; p18 = 4; p31 = 0.1; m10 = 1; m32 = 0.2; p24 = 10; g7 = 0.6; // Other declarations: var light; const compartment_, q1, n1, g1, gml, m1, m2, p2, p1, m3, p3, g3, m4, p7; const m11, q3, g8, n4, n7, g9, gm9, m12, p8, m13, m22, n8, g10, n9, g11; const gm7, m14, p9, m15, m23, n10, g12, n11, g13, gm5, m16, p10, m17, m24; const n2, g4, g5, gmt, m5, p4, m6, m7, p5, m8, n13, g2, g6, gm4, m34, p23; const m35, p25, p21, p26, m37, m36, n3, g16, gm3, m26, p16, m9, p19, p20; const m29, m30, p17, p28, p29, m19, p27, m39, n5, m27, p15, p6, n6, n14; const m31, m33, q2, n12, g14, g15, gmg, m18, p11, p12, p13, p14, m20, m21; const p18, p31, m10, m32, p24, g7; // Unit definitions: unit substance = 1e-9 mole; unit extent = 1e-9 mole; unit time_unit = 3.6e3 second; unit area = 1 meter^2; unit length = 1 meter; unit volume = 1 litre; // Display Names: substance is "nM (default)"; time_unit is "hour (default)"; end