<?xml version="1.0" encoding="UTF-8"?><sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
<model name="Locke2005ks_tanh_floweringM3">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
<p>SBML model of the Model 3 of Arabidopsis flowering model (Domingo et al., Cell 2009) - the photoperiodic pathway (CO attached to the interlocked feedback loop network (redeveloped SBML file of Kevin S)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 </p>
<p/>
<p>           As per BIOMD0000000055.xml but with revised light function.</p>
</body>
</html>
</notes>
<listOfFunctionDefinitions>
<functionDefinition id="lightFunction" name="lightFunction">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<lambda>
<bvar>
<ci> t </ci>
</bvar>
<bvar>
<ci> lightOffset </ci>
</bvar>
<bvar>
<ci> lightAmplitude </ci>
</bvar>
<bvar>
<ci> phase </ci>
</bvar>
<bvar>
<ci> photoPeriod </ci>
</bvar>
<bvar>
<ci> cyclePeriod </ci>
</bvar>
<bvar>
<ci> twilightPeriod </ci>
</bvar>
<apply>
<plus/>
<apply>
<minus/>
<apply>
<plus/>
<ci> lightOffset </ci>
<apply>
<times/>
<cn> 0.5 </cn>
<ci> lightAmplitude </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<tanh/>
<apply>
<divide/>
<apply>
<times/>
<ci> cyclePeriod </ci>
<apply>
<minus/>
<apply>
<divide/>
<apply>
<plus/>
<ci> time </ci>
<ci> phase </ci>
</apply>
<ci> cyclePeriod </ci>
</apply>
<apply>
<floor/>
<apply>
<divide/>
<apply>
<floor/>
<apply>
<plus/>
<ci> time </ci>
<ci> phase </ci>
</apply>
</apply>
<ci> cyclePeriod </ci>
</apply>
</apply>
</apply>
</apply>
<ci> twilightPeriod </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<times/>
<cn> 0.5 </cn>
<ci> lightAmplitude </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<tanh/>
<apply>
<divide/>
<apply>
<minus/>
<apply>
<times/>
<ci> cyclePeriod </ci>
<apply>
<minus/>
<apply>
<divide/>
<apply>
<plus/>
<ci> time </ci>
<ci> phase </ci>
</apply>
<ci> cyclePeriod </ci>
</apply>
<apply>
<floor/>
<apply>
<divide/>
<apply>
<floor/>
<apply>
<plus/>
<ci> time </ci>
<ci> phase </ci>
</apply>
</apply>
<ci> cyclePeriod </ci>
</apply>
</apply>
</apply>
</apply>
<ci> photoPeriod </ci>
</apply>
<ci> twilightPeriod </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<times/>
<cn> 0.5 </cn>
<ci> lightAmplitude </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<tanh/>
<apply>
<divide/>
<apply>
<minus/>
<apply>
<times/>
<ci> cyclePeriod </ci>
<apply>
<minus/>
<apply>
<divide/>
<apply>
<plus/>
<ci> time </ci>
<ci> phase </ci>
</apply>
<ci> cyclePeriod </ci>
</apply>
<apply>
<floor/>
<apply>
<divide/>
<apply>
<floor/>
<apply>
<plus/>
<ci> time </ci>
<ci> phase </ci>
</apply>
</apply>
<ci> cyclePeriod </ci>
</apply>
</apply>
</apply>
</apply>
<ci> cyclePeriod </ci>
</apply>
<ci> twilightPeriod </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</lambda>
</math>
</functionDefinition>
</listOfFunctionDefinitions>
<listOfCompartments>
<compartment id="compartment" name="compartment" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="cCOp" name="cCOp" compartment="compartment" initialConcentration="0"/>
<species id="cFTm" name="cFTm" compartment="compartment" initialConcentration="0"/>
<species id="cLc" name="cLc" compartment="compartment" initialConcentration="0.015"/>
<species id="cLm" name="cLm" compartment="compartment" initialConcentration="0.539"/>
<species id="cLn" name="cLn" compartment="compartment" initialConcentration="0.0855"/>
<species id="cPn" name="cPn" compartment="compartment" initialConcentration="0.835"/>
<species id="cTc" name="cTc" compartment="compartment" initialConcentration="8.7"/>
<species id="cTm" name="cTm" compartment="compartment" initialConcentration="0.456"/>
<species id="cTn" name="cTn" compartment="compartment" initialConcentration="0.4"/>
<species id="cXc" name="cXc" compartment="compartment" initialConcentration="1.34"/>
<species id="cXm" name="cXm" compartment="compartment" initialConcentration="0.08"/>
<species id="cXn" name="cXn" compartment="compartment" initialConcentration="0.4"/>
<species id="cYc" name="cYc" compartment="compartment" initialConcentration="0.004"/>
<species id="cYm" name="cYm" compartment="compartment" initialConcentration="0.037"/>
<species id="cYn" name="cYn" compartment="compartment" initialConcentration="0.013"/>
</listOfSpecies>
<listOfParameters>
<parameter id="q1" name="q1" value="2.4514"/>
<parameter id="n1" name="n1" value="5.1694"/>
<parameter id="a" name="a" value="3.3064"/>
<parameter id="g1" name="g1" value="0.876738488"/>
<parameter id="m1" name="m1" value="1.5283"/>
<parameter id="k1" name="k1" value="1.817"/>
<parameter id="p1" name="p1" value="0.8295"/>
<parameter id="r1" name="r1" value="16.8363"/>
<parameter id="r2" name="r2" value="0.1687"/>
<parameter id="m2" name="m2" value="20.44"/>
<parameter id="k2" name="k2" value="1.5644"/>
<parameter id="m3" name="m3" value="3.6888"/>
<parameter id="k3" name="k3" value="1.2765"/>
<parameter id="n2" name="n2" value="3.0087"/>
<parameter id="b" name="b" value="1.0258"/>
<parameter id="g2" name="g2" value="0.036805783"/>
<parameter id="g3" name="g3" value="0.26593318"/>
<parameter id="c" name="c" value="1.0258"/>
<parameter id="m4" name="m4" value="3.8231"/>
<parameter id="k4" name="k4" value="2.5734"/>
<parameter id="p2" name="p2" value="4.324"/>
<parameter id="r3" name="r3" value="0.3166"/>
<parameter id="r4" name="r4" value="2.1509"/>
<parameter id="m5" name="m5" value="0.0013"/>
<parameter id="m6" name="m6" value="3.1741"/>
<parameter id="k5" name="k5" value="2.7454"/>
<parameter id="m7" name="m7" value="0.0492"/>
<parameter id="m8" name="m8" value="4.0424"/>
<parameter id="k6" name="k6" value="0.4033"/>
<parameter id="n3" name="n3" value="0.2431"/>
<parameter id="d" name="d" value="1.4422"/>
<parameter id="g4" name="g4" value="0.538811228"/>
<parameter id="m9" name="m9" value="10.1132"/>
<parameter id="k7" name="k7" value="6.5585"/>
<parameter id="p3" name="p3" value="2.147"/>
<parameter id="r5" name="r5" value="1.0352"/>
<parameter id="r6" name="r6" value="3.3017"/>
<parameter id="m10" name="m10" value="0.2179"/>
<parameter id="k8" name="k8" value="0.6632"/>
<parameter id="m11" name="m11" value="3.3442"/>
<parameter id="k9" name="k9" value="17.1111"/>
<parameter id="q2" name="q2" value="2.40178"/>
<parameter id="n4" name="n4" value="0.0857"/>
<parameter id="n5" name="n5" value="0.1649"/>
<parameter id="g5" name="g5" value="1.17803247"/>
<parameter id="g6" name="g6" value="0.064455137"/>
<parameter id="f" name="f" value="1.0237"/>
<parameter id="e" name="e" value="3.6064"/>
<parameter id="m12" name="m12" value="4.297"/>
<parameter id="k10" name="k10" value="1.7303"/>
<parameter id="p4" name="p4" value="0.2485"/>
<parameter id="r7" name="r7" value="2.2123"/>
<parameter id="r8" name="r8" value="0.2002"/>
<parameter id="m13" name="m13" value="0.1347"/>
<parameter id="k11" name="k11" value="1.8258"/>
<parameter id="m14" name="m14" value="0.6114"/>
<parameter id="k12" name="k12" value="1.8066"/>
<parameter id="p5" name="p5" value="0.5"/>
<parameter id="k13" name="k13" value="1.2"/>
<parameter id="q3" name="q3" value="1"/>
<parameter id="m15" name="m15" value="1.2"/>
<parameter id="lightAmplitude" name="lightAmplitude" value="1"/>
<parameter id="lightOffset" name="lightOffset" value="0"/>
<parameter id="cyclePeriod" name="cyclePeriod" value="24"/>
<parameter id="photoPeriod" name="photoPeriod" value="8"/>
<parameter id="phase" name="phase" value="0"/>
<parameter id="twilightPeriod" name="twilightPeriod" value="0.0416666667"/>
<parameter id="two11_Fch_0" name="two11_Fch_0" value="8"/>
<parameter id="four12_Fch_0" name="four12_Fch_0" value="8"/>
<parameter id="vCOm" name="vCOm" value="1.1452"/>
<parameter id="vCOp" name="vCOp" value="9.2242"/>
<parameter id="kCOp" name="kCOp" value="2.0976"/>
<parameter id="vCOFT" name="vCOFT" value="0.6683"/>
<parameter id="kCOFT" name="kCOFT" value="7.3533"/>
<parameter id="vFT" name="vFT" value="1.8674"/>
<parameter id="kFT" name="kFT" value="5.3925"/>
</listOfParameters>
<listOfReactions>
<reaction id="one11" name="one11" reversible="false">
<listOfProducts>
<speciesReference species="cLm"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cPn"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<ci> lightFunction </ci>
<ci> time </ci>
<ci> lightOffset </ci>
<ci> lightAmplitude </ci>
<ci> phase </ci>
<ci> photoPeriod </ci>
<ci> cyclePeriod </ci>
<ci> twilightPeriod </ci>
</apply>
<ci> q1 </ci>
<ci> cPn </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="two11" name="two11" reversible="false">
<listOfProducts>
<speciesReference species="cLm"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cXn"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> n1 </ci>
<apply>
<power/>
<ci> cXn </ci>
<ci> a </ci>
</apply>
</apply>
<apply>
<plus/>
<apply>
<power/>
<ci> g1 </ci>
<ci> a </ci>
</apply>
<apply>
<power/>
<ci> cXn </ci>
<ci> a </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three11" name="three11" reversible="false">
<listOfReactants>
<speciesReference species="cLm"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m1 </ci>
<ci> cLm </ci>
</apply>
<apply>
<plus/>
<ci> k1 </ci>
<ci> cLm </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one12" name="one12" reversible="false">
<listOfProducts>
<speciesReference species="cLc"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cLm"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> p1 </ci>
<ci> cLm </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three12" name="three12" reversible="false">
<listOfReactants>
<speciesReference species="cLn"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="cLc"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> r2 </ci>
<ci> cLn </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="four12" name="four12" reversible="false">
<listOfReactants>
<speciesReference species="cLc"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m2 </ci>
<ci> cLc </ci>
</apply>
<apply>
<plus/>
<ci> k2 </ci>
<ci> cLc </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one13" name="one13" reversible="false">
<listOfReactants>
<speciesReference species="cLc"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="cLn"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> r1 </ci>
<ci> cLc </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three13" name="three13" reversible="false">
<listOfReactants>
<speciesReference species="cLn"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m3 </ci>
<ci> cLn </ci>
</apply>
<apply>
<plus/>
<ci> k3 </ci>
<ci> cLn </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one14" name="one14" reversible="false">
<listOfProducts>
<speciesReference species="cTm"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cLn"/>
<modifierSpeciesReference species="cYn"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> n2 </ci>
<apply>
<power/>
<ci> cYn </ci>
<ci> b </ci>
</apply>
</apply>
<apply>
<plus/>
<apply>
<power/>
<ci> g2 </ci>
<ci> b </ci>
</apply>
<apply>
<power/>
<ci> cYn </ci>
<ci> b </ci>
</apply>
</apply>
</apply>
<apply>
<divide/>
<apply>
<power/>
<ci> g3 </ci>
<ci> c </ci>
</apply>
<apply>
<plus/>
<apply>
<power/>
<ci> g3 </ci>
<ci> c </ci>
</apply>
<apply>
<power/>
<ci> cLn </ci>
<ci> c </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="two14" name="two14" reversible="false">
<listOfReactants>
<speciesReference species="cTm"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m4 </ci>
<ci> cTm </ci>
</apply>
<apply>
<plus/>
<ci> k4 </ci>
<ci> cTm </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one15" name="one15" reversible="false">
<listOfProducts>
<speciesReference species="cTc"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cTm"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> p2 </ci>
<ci> cTm </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three15" name="three15" reversible="false">
<listOfReactants>
<speciesReference species="cTn"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="cTc"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> r4 </ci>
<ci> cTn </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="four15" name="four15" reversible="false">
<listOfReactants>
<speciesReference species="cTc"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<plus/>
<apply>
<times/>
<apply>
<minus/>
<cn type="integer"> 1 </cn>
<apply>
<ci> lightFunction </ci>
<ci> time </ci>
<ci> lightOffset </ci>
<ci> lightAmplitude </ci>
<ci> phase </ci>
<ci> photoPeriod </ci>
<ci> cyclePeriod </ci>
<ci> twilightPeriod </ci>
</apply>
</apply>
<ci> m5 </ci>
</apply>
<ci> m6 </ci>
</apply>
<apply>
<divide/>
<ci> cTc </ci>
<apply>
<plus/>
<ci> k5 </ci>
<ci> cTc </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one16" name="one16" reversible="false">
<listOfReactants>
<speciesReference species="cTc"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="cTn"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> r3 </ci>
<ci> cTc </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three16" name="three16" reversible="false">
<listOfReactants>
<speciesReference species="cTn"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<plus/>
<apply>
<times/>
<apply>
<minus/>
<cn type="integer"> 1 </cn>
<apply>
<ci> lightFunction </ci>
<ci> time </ci>
<ci> lightOffset </ci>
<ci> lightAmplitude </ci>
<ci> phase </ci>
<ci> photoPeriod </ci>
<ci> cyclePeriod </ci>
<ci> twilightPeriod </ci>
</apply>
</apply>
<ci> m7 </ci>
</apply>
<ci> m8 </ci>
</apply>
<apply>
<divide/>
<ci> cTn </ci>
<apply>
<plus/>
<ci> k6 </ci>
<ci> cTn </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one17" name="one17" reversible="false">
<listOfProducts>
<speciesReference species="cXm"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cTn"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> n3 </ci>
<apply>
<power/>
<ci> cTn </ci>
<ci> d </ci>
</apply>
</apply>
<apply>
<plus/>
<apply>
<power/>
<ci> g4 </ci>
<ci> d </ci>
</apply>
<apply>
<power/>
<ci> cTn </ci>
<ci> d </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="two17" name="two17" reversible="false">
<listOfReactants>
<speciesReference species="cXm"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m9 </ci>
<ci> cXm </ci>
</apply>
<apply>
<plus/>
<ci> k7 </ci>
<ci> cXm </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one18" name="one18" reversible="false">
<listOfProducts>
<speciesReference species="cXc"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cXm"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> p3 </ci>
<ci> cXm </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three18" name="three18" reversible="false">
<listOfReactants>
<speciesReference species="cXn"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="cXc"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> r6 </ci>
<ci> cXn </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="four18" name="four18" reversible="false">
<listOfReactants>
<speciesReference species="cXc"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m10 </ci>
<ci> cXc </ci>
</apply>
<apply>
<plus/>
<ci> k8 </ci>
<ci> cXc </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one19" name="one19" reversible="false">
<listOfReactants>
<speciesReference species="cXc"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="cXn"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> r5 </ci>
<ci> cXc </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three19" name="three19" reversible="false">
<listOfReactants>
<speciesReference species="cXn"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m11 </ci>
<ci> cXn </ci>
</apply>
<apply>
<plus/>
<ci> k9 </ci>
<ci> cXn </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one20" name="one20" reversible="false">
<listOfProducts>
<speciesReference species="cYm"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cLn"/>
<modifierSpeciesReference species="cPn"/>
<modifierSpeciesReference species="cTn"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<plus/>
<apply>
<times/>
<apply>
<ci> lightFunction </ci>
<ci> time </ci>
<ci> lightOffset </ci>
<ci> lightAmplitude </ci>
<ci> phase </ci>
<ci> photoPeriod </ci>
<ci> cyclePeriod </ci>
<ci> twilightPeriod </ci>
</apply>
<ci> q2 </ci>
<ci> cPn </ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<apply>
<plus/>
<apply>
<times/>
<apply>
<ci> lightFunction </ci>
<ci> time </ci>
<ci> lightOffset </ci>
<ci> lightAmplitude </ci>
<ci> phase </ci>
<ci> photoPeriod </ci>
<ci> cyclePeriod </ci>
<ci> twilightPeriod </ci>
</apply>
<ci> n4 </ci>
</apply>
<ci> n5 </ci>
</apply>
<apply>
<power/>
<ci> g5 </ci>
<ci> e </ci>
</apply>
</apply>
<apply>
<plus/>
<apply>
<power/>
<ci> g5 </ci>
<ci> e </ci>
</apply>
<apply>
<power/>
<ci> cTn </ci>
<ci> e </ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<divide/>
<apply>
<power/>
<ci> g6 </ci>
<ci> f </ci>
</apply>
<apply>
<plus/>
<apply>
<power/>
<ci> g6 </ci>
<ci> f </ci>
</apply>
<apply>
<power/>
<ci> cLn </ci>
<ci> f </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="two20" name="two20" reversible="false">
<listOfReactants>
<speciesReference species="cYm"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m12 </ci>
<ci> cYm </ci>
</apply>
<apply>
<plus/>
<ci> k10 </ci>
<ci> cYm </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one21" name="one21" reversible="false">
<listOfProducts>
<speciesReference species="cYc"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cYm"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> p4 </ci>
<ci> cYm </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three21" name="three21" reversible="false">
<listOfReactants>
<speciesReference species="cYn"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="cYc"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> r8 </ci>
<ci> cYn </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="four21" name="four21" reversible="false">
<listOfReactants>
<speciesReference species="cYc"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m13 </ci>
<ci> cYc </ci>
</apply>
<apply>
<plus/>
<ci> k11 </ci>
<ci> cYc </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one22" name="one22" reversible="false">
<listOfReactants>
<speciesReference species="cYc"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="cYn"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> r7 </ci>
<ci> cYc </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three22" name="three22" reversible="false">
<listOfReactants>
<speciesReference species="cYn"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m14 </ci>
<ci> cYn </ci>
</apply>
<apply>
<plus/>
<ci> k12 </ci>
<ci> cYn </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="one23" name="one23" reversible="false">
<listOfProducts>
<speciesReference species="cPn"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<minus/>
<cn type="integer"> 1 </cn>
<apply>
<ci> lightFunction </ci>
<ci> time </ci>
<ci> lightOffset </ci>
<ci> lightAmplitude </ci>
<ci> phase </ci>
<ci> photoPeriod </ci>
<ci> cyclePeriod </ci>
<ci> twilightPeriod </ci>
</apply>
</apply>
<ci> p5 </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="two23" name="two23" reversible="false">
<listOfReactants>
<speciesReference species="cPn"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> m15 </ci>
<ci> cPn </ci>
</apply>
<apply>
<plus/>
<ci> k13 </ci>
<ci> cPn </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="three23" name="three23" reversible="false">
<listOfReactants>
<speciesReference species="cPn"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> q3 </ci>
<apply>
<ci> lightFunction </ci>
<ci> time </ci>
<ci> lightOffset </ci>
<ci> lightAmplitude </ci>
<ci> phase </ci>
<ci> photoPeriod </ci>
<ci> cyclePeriod </ci>
<ci> twilightPeriod </ci>
</apply>
<ci> cPn </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="COpistranslatedfromCOmthatisassumedtobeequaltocTn" name="COpistranslatedfromCOmthatisassumedtobeequaltocTn" reversible="false">
<listOfProducts>
<speciesReference species="cCOp"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cTn"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<ci> vCOm </ci>
<ci> cTn </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="COpdegradation" name="COpdegradation" reversible="false">
<listOfReactants>
<speciesReference species="cCOp"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> compartment </ci>
<apply>
<minus/>
<cn type="integer"> 1 </cn>
<apply>
<ci> lightFunction </ci>
<ci> time </ci>
<ci> lightOffset </ci>
<ci> lightAmplitude </ci>
<ci> phase </ci>
<ci> photoPeriod </ci>
<ci> cyclePeriod </ci>
<ci> twilightPeriod </ci>
</apply>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci> vCOp </ci>
<ci> cCOp </ci>
</apply>
<apply>
<plus/>
<ci> kCOp </ci>
<ci> cCOp </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="FTinductionbyCOp" name="FTinductionbyCOp" reversible="false">
<listOfProducts>
<speciesReference species="cFTm"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="cCOp"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> compartment </ci>
<ci> vCOFT </ci>
<ci> cCOp </ci>
</apply>
<apply>
<plus/>
<ci> kCOFT </ci>
<ci> cCOp </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="FTmdegradation" name="FTmdegradation" reversible="false">
<listOfReactants>
<speciesReference species="cFTm"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> compartment </ci>
<ci> vFT </ci>
<ci> cFTm </ci>
</apply>
<apply>
<plus/>
<ci> kFT </ci>
<ci> cFTm </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>