<?xml version="1.0" encoding="UTF-8"?> <!-- Created by COPASI version 4.8 (Build 35) on 2014-10-03 23:40 with libSBML version 4.2.0. --> <sbml xmlns="http://www.sbml.org/sbml/level2/version4" metaid="metaid_0000001" level="2" version="4"> <model metaid="metaid_0000002" id="Gould2011_TempSensitiveCircClock" name="Gould2011_TempSensitiveCircClock"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <body xmlns="http://www.w3.org/1999/xhtml"> <strong>Abstract:</strong> <p> This model is a temperature sensitive version of Pokhilko et al. 2010 PMID 20865009 </p> </body> </body> </notes> <annotation> <plasmo:dbinfo xmlns:plasmo="http://www.uk.ac.ed.csbe.sbsi.plasmo/ns" plasmo:id="PLM_50" plasmo:version="1"/> <COPASI xmlns="http://www.copasi.org/static/sbml"> <rdf:RDF xmlns:CopasiMT="http://www.copasi.org/RDF/MiriamTerms#" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"> <rdf:Description rdf:about="#metaid_0000002"> <bqmodel:isDerivedFrom> <rdf:Bag> <rdf:li rdf:resource="urn:miriam:biomodels.db:BIOMD0000000089"/> </rdf:Bag> </bqmodel:isDerivedFrom> <dcterms:bibliographicCitation> <rdf:Bag> <rdf:li> <rdf:Description> <CopasiMT:isDescribedBy rdf:resource="urn:miriam:pubmed:20865009"/> </rdf:Description> </rdf:li> </rdf:Bag> </dcterms:bibliographicCitation> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2010-10-21T17:09:01Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> <dcterms:creator> <rdf:Bag> <rdf:li> <rdf:Description> <vCard:EMAIL>mirela.domijan@warwick.ac.uk</vCard:EMAIL> <vCard:N> <rdf:Description> <vCard:Family>Domijan</vCard:Family> <vCard:Given>Mirela</vCard:Given> </rdf:Description> </vCard:N> <vCard:ORG> <rdf:Description> <vCard:Orgname>University of Warwick</vCard:Orgname> </rdf:Description> </vCard:ORG> </rdf:Description> </rdf:li> </rdf:Bag> </dcterms:creator> 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<dc:creator> <rdf:Bag> <rdf:li rdf:parseType="Resource"> <vCard:N rdf:parseType="Resource"> <vCard:Family>Domijan</vCard:Family> <vCard:Given>Mirela</vCard:Given> </vCard:N> <vCard:EMAIL>mirela.domijan@warwick.ac.uk</vCard:EMAIL> <vCard:ORG rdf:parseType="Resource"> <vCard:Orgname>University of Warwick</vCard:Orgname> </vCard:ORG> </rdf:li> </rdf:Bag> </dc:creator> <dcterms:created rdf:parseType="Resource"> <dcterms:W3CDTF>2010-10-21T17:09:01Z</dcterms:W3CDTF> </dcterms:created> <dcterms:modified rdf:parseType="Resource"> <dcterms:W3CDTF>2011-12-05T20:29:02Z</dcterms:W3CDTF> </dcterms:modified> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="urn:miriam:biomodels.db:BIOMD0000000273"/> </rdf:Bag> </bqbiol:is> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="urn:miriam:biomodels.db:MODEL1007240000"/> </rdf:Bag> </bqbiol:is> <bqbiol:isVersionOf> <rdf:Bag> <rdf:li rdf:resource="urn:miriam:obo.go:GO:0007623"/> </rdf:Bag> </bqbiol:isVersionOf> <bqbiol:occursIn> <rdf:Bag> <rdf:li 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</lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP7_m_trscr_1" name="function_4_cP7_m_trscr_1"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cL </ci> </bvar> <bvar> <ci> cLm </ci> </bvar> <bvar> <ci> cP9 </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> g10 </ci> </bvar> <bvar> <ci> g11 </ci> </bvar> <bvar> <ci> j </ci> </bvar> <bvar> <ci> k </ci> </bvar> <bvar> <ci> n8 </ci> </bvar> <bvar> <ci> n9 </ci> </bvar> <apply> <divide/> <apply> <plus/> <apply> <divide/> <apply> <times/> <ci> n8 </ci> <apply> <power/> <apply> <plus/> <ci> cLm </ci> <ci> cL </ci> </apply> <ci> j </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <apply> <plus/> <ci> cLm </ci> <ci> cL </ci> </apply> <ci> j </ci> </apply> <apply> <power/> <ci> g10 </ci> <ci> j </ci> </apply> </apply> </apply> <apply> <divide/> <apply> <times/> <ci> n9 </ci> <apply> <power/> <ci> cP9 </ci> <ci> k </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cP9 </ci> 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xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cLm </ci> </bvar> <bvar> <ci> cP7 </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> g12 </ci> </bvar> <bvar> <ci> g13 </ci> </bvar> <bvar> <ci> l </ci> </bvar> <bvar> <ci> m </ci> </bvar> <bvar> <ci> n10 </ci> </bvar> <bvar> <ci> n11 </ci> </bvar> <apply> <divide/> <apply> <plus/> <apply> <divide/> <apply> <times/> <ci> n10 </ci> <apply> <power/> <ci> cLm </ci> <ci> l </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cLm </ci> <ci> l </ci> </apply> <apply> <power/> <ci> g12 </ci> <ci> l </ci> </apply> </apply> </apply> <apply> <divide/> <apply> <times/> <ci> n11 </ci> <apply> <power/> <ci> cP7 </ci> <ci> m </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cP7 </ci> <ci> m </ci> </apply> <apply> <power/> <ci> g13 </ci> <ci> m </ci> </apply> </apply> </apply> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP7_degr_1" 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</apply> <apply> <plus/> <apply> <power/> <ci> cL </ci> <ci> o </ci> </apply> <apply> <power/> <ci> g15 </ci> <ci> o </ci> </apply> </apply> </apply> <apply> <power/> <ci> g14 </ci> <ci> n </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cT </ci> <ci> n </ci> </apply> <apply> <power/> <ci> g14 </ci> <ci> n </ci> </apply> </apply> </apply> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cNI_degr_1" name="function_4_cNI_degr_1"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> D </ci> </bvar> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cNI </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m17 </ci> </bvar> <bvar> <ci> m24 </ci> </bvar> <apply> <divide/> <apply> <times/> <apply> <plus/> <apply> <times/> <ci> m17 </ci> <ci> L </ci> </apply> <apply> <times/> <ci> m24 </ci> <ci> D </ci> </apply> </apply> <ci> cNI </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> 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xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> <rdf:Description rdf:about="#metaid_0000167"> <bqbiol:isVersionOf> <rdf:Bag> <rdf:li rdf:resource="urn:miriam:obo.go:GO:0006412"/> </rdf:Bag> </bqbiol:isVersionOf> </rdf:Description> </rdf:RDF> </annotation> <listOfProducts> <speciesReference species="cL"/> </listOfProducts> <listOfModifiers> <modifierSpeciesReference species="cL_m"/> </listOfModifiers> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> def </ci> <apply> <ci> function_4_cL_trsl_1 </ci> <ci> D </ci> <ci> L </ci> <ci> cL_m </ci> <ci> def </ci> <ci> p1 </ci> <ci> p2 </ci> </apply> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_0000168" id="cL_degr" name="cL_degr" reversible="false" sboTerm="SBO:0000179"> <annotation> <COPASI xmlns="http://www.copasi.org/static/sbml"> <rdf:RDF xmlns:CopasiMT="http://www.copasi.org/RDF/MiriamTerms#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description 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