Arabidopsis clock model P2012 from Alexandra Pokhilko; ; Initial values updated to the limit cycle by AJM, and original light function replaced with StepFunction, March 2014. t offset amplitude phase pulseDuration cyclePeriod rampDuration offset 0.5 amplitude 1 cyclePeriod t phase cyclePeriod t phase cyclePeriod rampDuration 0.5 amplitude 1 cyclePeriod t phase cyclePeriod t phase cyclePeriod pulseDuration rampDuration 0.5 amplitude 1 cyclePeriod t phase cyclePeriod t phase cyclePeriod cyclePeriod rampDuration L a cNI cP cP7 cP9 cT g1 n1 q1 L q1 cP n1 g1 a cP9 cP7 cNI cT a g1 a L cL_m m1 m2 m2 m1 m2 L cL_m L cL_m p1 p2 cL_m p1 L p2 c cL def g3 p3 p3 cL c cL c g3 c def cE3_m def p16 p16 cE3_m def cCOP1c cE3 def m9 m9 cE3 cCOP1c def cE3 cE3n def p19 p20 p19 cE3 p20 cE3n def cCOP1d cCOP1n cE3n cE4 cG cLUX def m10 m19 m9 p17 p21 p25 p26 p28 p29 m10 cE3n cCOP1n m9 cE3n cCOP1d p25 cE4 cE3n p21 p25 cE4 cE3n p26 cLUX p21 m9 cCOP1d m10 cCOP1n p17 cE3n p28 cG p29 m19 p17 cE3n def cEC cL cT def e g2 g6 n13 parameter_3 parameter_7 parameter_3 parameter_7 parameter_3 parameter_7 cT parameter_7 n13 g2 cEC g2 g6 e cL e g6 e def cLUX_m def m34 m34 cLUX_m def cLUX_m def p27 p27 cLUX_m def cCOP1d cCOP1n cE3n cE4 cLUX def m10 m36 m9 p21 p25 p26 m36 cLUX p26 cLUX p25 cE4 cE3n p26 cLUX p21 m9 cCOP1d m10 cCOP1n def def n5 n5 def L cCOP1c m27 p15 m27 cCOP1c 1 p15 L cCOP1c def p6 p6 cCOP1c def L cCOP1n m27 p15 m27 cCOP1n 1 p15 L L cCOP1n cP n14 n6 n6 L cP cCOP1n n14 cCOP1n c cL def g3 m3 p3 m3 cL p3 cL c cL c g3 c def cLm def m4 m4 cLm def L cP p7 p7 1 L 1 cP L cP m11 m11 cP L L cEC cL cP cT e g8 g9 n4 n7 parameter_2 parameter_7 q3 parameter_2 parameter_7 parameter_2 parameter_7 cT parameter_7 L q3 cP n4 n7 cL e cL e g9 e g8 cEC g8 cP9_m def m12 m12 cP9_m def cP9_m def p8 p8 cP9_m def L cP9 m13 m22 m13 m22 1 L cP9 cL cLm cP9 cT def e f g10 g11 n8 n9 parameter_6 parameter_7 parameter_6 parameter_7 parameter_6 parameter_7 cT parameter_7 n8 cLm cL e cLm cL e g10 e n9 cP9 f cP9 f g11 f def cP7_m def m14 m14 cP7_m def cP7_m def p9 p9 cP7_m def L cP7 m15 m23 m15 m23 1 L cP7 b cLm cP7 cT def e g12 g13 n10 n11 parameter_12 parameter_7 parameter_12 parameter_7 parameter_12 parameter_7 cT parameter_7 n10 cLm e cLm e g12 e n11 cP7 b cP7 b g13 b def cNI_m def m16 m16 cNI_m def cNI_m def p10 p10 cNI_m def L cNI m17 m24 m17 m24 1 L cNI cEC cL def e g4 g5 n2 parameter_11 parameter_14 species_3 n2 1 cL g5 1 species_3 parameter_14 parameter_11 e g4 cEC g4 def cT_m def m5 m5 cT_m def cT_m def p4 p4 cT_m def L cT cZG cZTL m6 m7 m8 p5 m6 m7 1 L cT p5 cZTL cZG m8 cT cEC cL cT def e g6 parameter_4 parameter_5 parameter_7 parameter_8 parameter_5 parameter_7 parameter_5 parameter_7 cT parameter_7 parameter_8 parameter_4 cEC parameter_4 g6 e cL e g6 e def cE4_m def m34 m34 cE4_m def cE4_m def p23 p23 cE4_m def cCOP1d cCOP1n cE3n cE4 cLUX def m10 m35 m9 p21 p25 p26 m35 cE4 p25 cE4 cE3n p21 p25 cE4 cE3n p26 cLUX p21 m9 cCOP1d m10 cCOP1n def cL def e g16 n3 n3 g16 e cL e g16 e def cE3_m def m26 m26 cE3_m def L cCOP1d m31 m33 m31 1 m33 1 L cCOP1d L cEC cL cP cT e g14 g15 n12 parameter_1 parameter_7 q2 parameter_1 parameter_7 parameter_1 parameter_7 cT parameter_7 L q2 cP n12 g14 cEC g14 g15 e cL e g15 e cG_m def m18 m18 cG_m def cG_m def p11 p11 cG_m def cE3n cG def m19 p17 p28 p29 m19 cG p28 cG p29 p28 cG p29 m19 p17 cE3n def L cG cZG cZTL p12 p13 p12 L cZTL cG p13 1 L cZG def p14 p14 def cZTL def m20 m20 cZTL def cZG def m21 m21 cZG def cE3 cG def p17 p17 cE3 cG def cCOP1c cCOP1d cCOP1n cE3n cEG cG def m10 m19 m9 p17 p18 p28 p29 parameter_26 m10 cEG cCOP1c p18 cEG parameter_26 p18 cEG p17 cE3n p28 cG p29 m19 p17 cE3n m10 cCOP1n m9 cCOP1d parameter_26 def cCOP1d cCOP1n cE3n cE4 cLUX def m10 m9 p21 p25 p26 p26 cLUX p25 cE4 cE3n p26 cLUX p21 m9 cCOP1d m10 cCOP1n def L cCOP1d cCOP1n cE3n cEC cEG cG d g7 m10 m19 m32 m9 p17 p18 p24 p28 p29 parameter_26 m10 cCOP1n cEC m9 cCOP1d cEC m32 cEC 1 p24 L p28 cG p29 m19 p17 cE3n p18 cEG p17 cE3n p28 cG p29 m19 p17 cE3n m10 cCOP1n m9 cCOP1d parameter_26 d p28 cG p29 m19 p17 cE3n p18 cEG p17 cE3n p28 cG p29 m19 p17 cE3n m10 cCOP1n m9 cCOP1d parameter_26 d g7 d cL cT def e parameter_13 parameter_17 parameter_24 parameter_7 parameter_13 parameter_7 parameter_13 parameter_7 cT parameter_7 parameter_24 cL e cL e parameter_17 e def def m37 species_1 m37 species_1 def def parameter_16 parameter_18 parameter_28 parameter_29 parameter_9 species_1 parameter_28 parameter_16 parameter_9 0.5 parameter_29 species_1 parameter_18 parameter_29 species_1 parameter_18 2 4 parameter_29 species_1 1 2 parameter_9 parameter_16 parameter_9 def def parameter_20 species_2 parameter_20 species_2 def def m30 species_2 species_3 m30 species_3 species_2 def def parameter_27 parameter_27 def L def parameter_10 parameter_15 parameter_21 parameter_25 species_3 species_4 parameter_25 parameter_21 L 1 species_4 parameter_15 parameter_10 parameter_15 parameter_10 species_3 parameter_10 def def m29 species_4 m29 species_4 def 2012-04-03T15:44:41Z 2012-04-03T15:47:04Z 2012-04-03T16:06:29Z 2012-04-03T15:43:45Z 2012-04-03T15:43:32Z 2012-04-03T17:52:09Z 2011-12-28T21:18:50Z 2011-12-28T21:15:28Z 2012-04-03T17:53:29Z 2012-04-03T17:53:36Z 2012-04-03T17:53:45Z 2012-04-03T17:53:49Z 2012-04-03T17:54:01Z 2012-04-03T17:54:04Z 2012-04-03T17:52:13Z 2012-04-03T17:52:28Z 2011-12-28T21:20:24Z 2011-12-28T21:15:47Z 2011-12-28T20:53:24Z 2012-04-03T17:45:14Z 2011-12-28T21:16:33Z 2012-04-03T17:47:51Z 2011-12-28T21:21:11Z 2011-12-28T21:22:58Z 2012-04-03T17:48:12Z 2011-12-28T21:21:21Z 2011-12-28T21:17:32Z 2012-04-03T17:48:34Z 2011-08-18T14:59:52Z 2012-04-03T17:45:49Z 2012-04-03T17:45:52Z 2012-04-03T17:46:01Z 2011-12-28T21:17:50Z 2011-12-28T21:17:52Z 2011-12-28T20:23:42Z 2012-04-03T17:49:00Z 2012-04-03T17:49:45Z 2012-04-03T17:50:45Z 2012-04-03T17:51:31Z 2012-04-03T17:51:34Z 2011-12-28T21:23:43Z 2011-12-28T21:23:47Z 2011-12-28T21:23:31Z 2012-04-03T17:51:53Z 2012-04-03T17:49:08Z 2012-04-03T17:49:17Z 2012-04-03T17:49:19Z 2012-04-03T17:49:21Z 2012-04-03T17:49:23Z 2012-04-03T17:49:26Z 2012-04-03T17:49:29Z 2012-04-03T17:49:31Z 2012-04-03T17:49:35Z 2011-12-28T21:19:05Z 2012-04-03T17:49:49Z 2012-04-03T17:49:53Z 2012-04-03T17:49:56Z 2011-08-18T15:12:55Z 2012-04-03T17:50:07Z 2011-12-28T21:20:55Z 2012-04-03T17:50:18Z 2011-12-28T21:30:08Z 2011-12-28T21:29:22Z 2011-12-28T21:17:06Z 2011-12-28T21:17:18Z 2012-04-03T17:50:56Z 2012-04-03T17:51:06Z 2012-04-03T17:51:07Z 2012-04-03T17:51:10Z 2012-04-03T17:51:15Z 2011-12-28T21:18:10Z 2011-12-28T21:18:36Z 2011-08-18T14:51:31Z 2011-12-28T20:26:36Z 2012-04-03T17:54:17Z 2012-04-03T17:55:09Z 2012-04-03T17:56:00Z 2011-12-28T21:20:39Z 2011-12-28T21:24:01Z 2012-04-03T17:56:29Z 2012-04-03T17:56:39Z 2012-04-03T17:56:41Z 2012-04-03T17:56:44Z 2012-04-03T17:54:20Z 2011-12-28T21:15:37Z 2012-04-03T17:54:31Z 2012-04-03T17:54:39Z 2012-04-03T17:54:43Z 2012-04-03T17:54:46Z 2011-12-28T21:15:42Z 2011-12-28T21:19:19Z 2012-04-03T17:55:03Z 2012-04-03T17:55:06Z 2012-04-03T17:55:13Z 2012-04-03T17:55:19Z 2011-12-28T21:11:52Z 2011-12-28T21:15:54Z 2011-12-28T21:21:36Z 2012-04-03T17:55:38Z 2012-04-03T17:55:46Z 2012-04-03T17:55:49Z 2012-04-03T17:55:54Z 2012-04-03T17:55:57Z 2012-04-03T15:56:29Z 2011-12-28T21:14:20Z 2011-12-28T21:14:59Z 2012-04-03T17:57:04Z 2011-08-18T14:55:15Z 2011-08-18T15:00:12Z 2011-12-28T21:18:23Z 2011-12-28T21:23:06Z 2011-12-28T21:22:35Z 2011-12-28T21:16:48Z 2011-12-28T21:22:46Z 2011-12-28T21:23:16Z 2011-12-28T21:17:46Z 2011-12-28T21:16:05Z 2012-04-03T15:48:35Z 2012-04-03T17:48:45Z 2012-04-03T17:48:46Z 2012-04-03T15:50:34Z 2012-04-03T15:50:53Z 2012-04-03T15:51:35Z 2012-04-03T15:51:54Z 2012-04-03T15:52:14Z 2012-04-03T15:52:35Z 2012-04-03T17:47:49Z 2012-04-03T15:53:33Z 2012-04-03T17:51:30Z 2012-04-03T15:54:25Z 2012-04-03T15:55:16Z 2012-04-03T17:53:06Z 2012-04-03T17:53:12Z 2012-04-03T15:56:53Z 2012-04-03T15:57:15Z 2012-04-03T17:56:12Z stepFunction time offsetStep1 amplitudeStep1 phaseStep1 pulseDurationStep1 cyclePeriodStep1 rampDurationStep1 step1 1 L 2011-12-20T18:35:06Z def function_4_cL_m_trscr_1 L a cNI cP cP7 cP9 cT g1 n1 q1 2011-12-20T19:25:21Z def function_4_cL_m_degr_1 L cL_m m1 m2 2011-12-20T19:30:54Z def function_4_cL_trsl_1 L cL_m p1 p2 2013-02-28T12:52:11Z def function_4_cL_degr_1 c cL def g3 m3 p3 2013-02-28T12:52:32Z def function_4_cL_modif_1 c cL def g3 p3 2011-12-20T19:30:34Z def function_4_cLm_degr_1 cLm def m4 2011-12-20T19:41:04Z def function_4_cP_trsl_1 L cP p7 2011-12-20T19:40:46Z def function_4_cP_degr_1 L cP m11 2011-12-20T19:37:21Z def function_4_cP9_m_trscr L cEC cL cP cT e g8 g9 n4 n7 parameter_2 parameter_7 q3 2011-12-20T19:37:19Z def function_4_cP9_m_degr_1 cP9_m def m12 2013-02-28T12:56:38Z def function_4_cP9_trsl_1 cP9_m def p8 2011-12-20T19:37:03Z def function_4_cP9_degr_1 L cP9 m13 m22 2011-12-28T20:44:49Z def function_4_cP7_m_trscr cL cLm cP9 cT def e f g10 g11 n8 n9 parameter_6 parameter_7 2013-02-28T12:55:41Z def function_4_cP7_m_degr_1 cP7_m def m14 2013-02-28T12:55:55Z def function_4_cP7_trsl_1 cP7_m def p9 2011-12-20T19:36:40Z def function_4_cP7_degr_1 L cP7 m15 m23 2012-04-03T16:51:42Z def function_4_cNI_m_trscr b cLm cP7 cT def e g12 g13 n10 n11 parameter_12 parameter_7 2013-02-28T12:54:05Z def function_4_cNI_m_degr_1 cNI_m def m16 2013-02-28T12:32:03Z def function_4_cNI_trsl_1 cNI_m def p10 2011-12-20T19:36:16Z def function_4_cNI_degr_1 L cNI m17 m24 2012-04-03T17:27:04Z def function_4_cT_m_trscr_1 cEC cL def e g4 g5 n2 parameter_11 parameter_14 species_3 2011-12-20T19:50:11Z def function_4_cT_m_degr_1 cT_m def m5 2013-02-28T12:58:16Z def function_4_cT_trsl_1 cT_m def p4 2011-12-20T19:50:15Z def function_4_cT_degr_1 L cT cZG cZTL m6 m7 m8 p5 2011-12-28T20:58:15Z def function_4_cE4_m_trscr cEC cL cT def e g6 parameter_4 parameter_5 parameter_7 parameter_8 2013-02-28T12:50:19Z def function_4_cE4_m_degr_1 cE4_m def m34 2013-02-28T12:31:18Z def function_4_cE4_trsl_1 cE4_m def p23 2012-04-03T16:25:58Z def function_4_cE4_degr_1 cCOP1d cCOP1n cE3n cE4 cLUX def m10 m35 m9 p21 p25 p26 2013-02-28T12:49:33Z def function_4_cE3_m_trscr_1 cL def e g16 n3 2012-04-03T18:06:44Z def function_4_cE3_m_degr_1 cE3_m def m26 2013-02-28T12:49:43Z def function_4_cE3_trsl_1 cE3_m def p16 2011-12-28T19:54:06Z def function_4_cE3_degr_1 cCOP1c cE3 def m9 2013-02-28T12:49:58Z def function_4_cE3n_import_1 cE3 cE3n def p19 p20 2011-12-28T19:55:06Z def function_4_cE3n_degr_1 cCOP1d cCOP1n cE3n cE4 cG cLUX def m10 m19 m9 p17 p21 p25 p26 p28 p29 2011-12-28T21:03:37Z def function_4_cLUX_m_trscr_1 cEC cL cT def e g2 g6 n13 parameter_3 parameter_7 2013-02-28T12:53:10Z def function_4_cLUX_m_degr_1 cLUX_m def m34 2013-02-28T12:53:37Z def function_4_cLUX_trsl_1 cLUX_m def p27 2011-12-28T20:12:07Z def function_4_cLUX_degr cCOP1d cCOP1n cE3n cE4 cLUX def m10 m36 m9 p21 p25 p26 2011-12-20T18:58:46Z def function_4_cCOP1c_trsl_1 def n5 2011-12-20T18:57:00Z def function_4_cCOP1c_degr_1 L cCOP1c m27 p15 2011-12-20T19:00:37Z def function_4_cCOP1n_import_1 cCOP1c def p6 2011-12-20T19:00:19Z def function_4_cCOP1n_degr_1 L cCOP1n m27 p15 2011-12-20T18:58:49Z def function_4_cCOP1d_activ_1 L cCOP1n cP n14 n6 2011-12-20T18:59:40Z def function_4_cCOP1d_degr_1 L cCOP1d m31 m33 2011-12-20T19:22:11Z def function_4_cG_m_trscr L cEC cL cP cT e g14 g15 n12 parameter_1 parameter_7 q2 2013-02-28T12:51:43Z def function_4_cG_m_degr_1 cG_m def m18 2013-02-28T12:52:04Z def function_4_cG_trsl_1 cG_m def p11 2011-12-20T19:17:55Z def function_4_cG_degr cE3n cG def m19 p17 p28 p29 2011-12-20T19:18:14Z def function_4_cG_cZTL_assoc_1 L cG cZG cZTL p12 p13 2013-02-28T12:32:01Z def function_4_cZTL_trsl_1 def p14 2013-02-28T12:58:04Z def function_4_cZTL_degr_1 cZTL def m20 2013-02-28T12:58:11Z def function_4_cZG_degr_1 cZG def m21 2013-02-28T12:51:25Z def function_4_cG_cE3_assoc_1 cE3 cG def p17 2011-12-20T19:08:25Z def function_4_cEG_degr cCOP1c cCOP1d cCOP1n cE3n cEG cG def m10 m19 m9 p17 p18 p28 p29 parameter_26 2011-12-20T19:08:16Z def function_4_cEC_form_1 cCOP1d cCOP1n cE3n cE4 cLUX def m10 m9 p21 p25 p26 2011-12-20T19:10:50Z def function_4_cEC_degr_1 L cCOP1d cCOP1n cE3n cEC cEG cG d g7 m10 m19 m32 m9 p17 p18 p24 p28 p29 parameter_26 2012-04-03T16:42:06Z default function_4_cABAR_m_trscr cL cT def e parameter_13 parameter_17 parameter_24 parameter_7 2012-04-03T16:43:50Z default function_4_cABAR_m_degr_1 def m37 species_1 2012-04-03T17:31:29Z default function_4_cPP2C_act def parameter_16 parameter_18 parameter_28 parameter_29 parameter_9 species_1 2012-04-03T17:31:37Z default function_4_cPP2C_degr def parameter_20 species_2 2012-04-03T17:40:06Z default function_4_cSnRK2_degr_1 def m30 species_2 species_3 2012-04-03T17:35:36Z default function_4_cSnRK2_act def parameter_27 2013-02-28T12:57:14Z default function_4_cs_act L def parameter_10 parameter_15 parameter_21 parameter_25 species_3 species_4 2013-03-06T07:21:20Z default function_4_cs_degr def m29 species_4 time 312 0 1 1