<?xml version="1.0" encoding="UTF-8"?><!-- Created by COPASI version 4.7 (Build 34) on 2011-10-31 14:06 with libSBML version 4.2.0. --><sbml xmlns="http://www.sbml.org/sbml/level2/version3" metaid="metaid_0000001" level="2" version="3"> <model metaid="metaid_0000002" id="mymodel__1j1__2_3e_4_i_1291232187833" name="Alex"> <listOfFunctionDefinitions> <functionDefinition id="function_4_cL_m_trscr" name="function_4_cL_m_trscr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> L </ci> </bvar> <bvar> <ci> a </ci> </bvar> <bvar> <ci> b </ci> </bvar> <bvar> <ci> cNI </ci> </bvar> <bvar> <ci> cP </ci> </bvar> <bvar> <ci> cP7 </ci> </bvar> <bvar> <ci> cP9 </ci> </bvar> <bvar> <ci> cTm </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> g1 </ci> </bvar> <bvar> <ci> g2 </ci> </bvar> <bvar> <ci> n0 </ci> </bvar> <bvar> <ci> n1 </ci> </bvar> <bvar> <ci> q1 </ci> </bvar> <apply> <divide/> <apply> <divide/> <apply> <times/> <apply> <plus/> <apply> <times/> <ci> n0 </ci> <ci> 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</ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p4 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> p4 </ci> <ci> cT_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cT_degr" name="function_4_cT_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> D </ci> </bvar> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cT </ci> </bvar> <bvar> <ci> cZG </ci> </bvar> <bvar> <ci> cZTL </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m6 </ci> </bvar> <bvar> <ci> m7 </ci> </bvar> <bvar> <ci> m8 </ci> </bvar> <bvar> <ci> p5 </ci> </bvar> <apply> <divide/> <apply> <plus/> <apply> <times/> <apply> <plus/> <apply> <times/> <ci> m6 </ci> <ci> L </ci> </apply> <apply> <times/> <ci> m7 </ci> <ci> D </ci> </apply> </apply> <ci> cT </ci> <apply> <plus/> <apply> <times/> <ci> p5 </ci> <ci> cZTL </ci> </apply> <ci> cZG </ci> </apply> </apply> <apply> <times/> <ci> m8 </ci> <ci> cT </ci> </apply> </apply> 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<divide/> <apply> <times/> <apply> <plus/> <apply> <times/> <ci> m25 </ci> <ci> L </ci> </apply> <apply> <times/> <ci> m26 </ci> <ci> D </ci> </apply> </apply> <ci> cTm </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cY_m_trscr" name="function_4_cY_m_trscr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> D </ci> </bvar> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cL </ci> </bvar> <bvar> <ci> cP </ci> </bvar> <bvar> <ci> cT </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> g </ci> </bvar> <bvar> <ci> g16 </ci> </bvar> <bvar> <ci> g7 </ci> </bvar> <bvar> <ci> n5 </ci> </bvar> <bvar> <ci> n6 </ci> </bvar> <bvar> <ci> q2 </ci> </bvar> <bvar> <ci> s </ci> </bvar> <apply> <divide/> <apply> <plus/> <apply> <times/> <ci> L </ci> <ci> q2 </ci> <ci> cP </ci> </apply> <apply> <divide/> <apply> <times/> <apply> <divide/> <apply> <times/> <apply> <plus/> <apply> <times/> <ci> n5 </ci> <ci> L </ci> </apply> <apply> <times/> <ci> n6 </ci> <ci> D </ci> </apply> </apply> <apply> <power/> <ci> g7 </ci> <ci> s </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cT </ci> <ci> s </ci> </apply> <apply> <power/> <ci> g7 </ci> <ci> s </ci> </apply> </apply> </apply> <apply> <power/> <ci> g16 </ci> <ci> g </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cL </ci> <ci> g </ci> </apply> <apply> <power/> <ci> g16 </ci> <ci> g </ci> </apply> </apply> </apply> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cY_m_degr" name="function_4_cY_m_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cY_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m9 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m9 </ci> <ci> cY_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cY_trsl" name="function_4_cY_trsl"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cY_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p6 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> p6 </ci> <ci> cY_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cY_degr" name="function_4_cY_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cY </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m10 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m10 </ci> <ci> cY </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP_trsl" name="function_4_cP_trsl"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> D </ci> </bvar> <bvar> <ci> cP </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p7 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> p7 </ci> <ci> D </ci> <apply> <minus/> <cn type="integer"> 1 </cn> <ci> cP </ci> </apply> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP_degr" name="function_4_cP_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cP </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m11 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m11 </ci> <ci> cP </ci> <ci> L </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP9_m_trscr" name="function_4_cP9_m_trscr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cL </ci> </bvar> <bvar> <ci> cP </ci> </bvar> <bvar> <ci> cT </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> g8 </ci> </bvar> <bvar> <ci> g9 </ci> </bvar> <bvar> <ci> h </ci> </bvar> <bvar> <ci> i </ci> </bvar> <bvar> <ci> n4 </ci> </bvar> <bvar> <ci> n7 </ci> </bvar> <bvar> <ci> q3 </ci> </bvar> <apply> <divide/> <apply> 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cP9_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP9_trsl" name="function_4_cP9_trsl"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cP9_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p8 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> p8 </ci> <ci> cP9_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP9_degr" name="function_4_cP9_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> D </ci> </bvar> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cP9 </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m13 </ci> </bvar> <bvar> <ci> m22 </ci> </bvar> <apply> <divide/> <apply> <times/> <apply> <plus/> <apply> <times/> <ci> m13 </ci> <ci> L </ci> </apply> <apply> <times/> <ci> m22 </ci> <ci> D </ci> </apply> </apply> <ci> cP9 </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP7_m_trscr" name="function_4_cP7_m_trscr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cL </ci> </bvar> <bvar> <ci> cLm </ci> </bvar> <bvar> <ci> cP9 </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> g10 </ci> </bvar> <bvar> <ci> g11 </ci> </bvar> <bvar> <ci> j </ci> </bvar> <bvar> <ci> k </ci> </bvar> <bvar> <ci> n8 </ci> </bvar> <bvar> <ci> n9 </ci> </bvar> <apply> <divide/> <apply> <plus/> <apply> <divide/> <apply> <times/> <ci> n8 </ci> <apply> <power/> <apply> <plus/> <ci> cLm </ci> <ci> cL </ci> </apply> <ci> j </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <apply> <plus/> <ci> cLm </ci> <ci> cL </ci> </apply> <ci> j </ci> </apply> <apply> <power/> <ci> g10 </ci> <ci> j </ci> </apply> </apply> </apply> <apply> <divide/> <apply> <times/> <ci> n9 </ci> <apply> <power/> <ci> cP9 </ci> <ci> k </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cP9 </ci> <ci> k </ci> </apply> <apply> <power/> <ci> g11 </ci> <ci> k </ci> </apply> </apply> </apply> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP7_m_degr" name="function_4_cP7_m_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cP7_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m14 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m14 </ci> <ci> cP7_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP7_trsl" name="function_4_cP7_trsl"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cP7_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p9 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> p9 </ci> <ci> cP7_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cP7_degr" name="function_4_cP7_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> D </ci> </bvar> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cP7 </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m15 </ci> </bvar> <bvar> <ci> m23 </ci> </bvar> <apply> <divide/> <apply> <times/> <apply> <plus/> <apply> <times/> <ci> m15 </ci> <ci> L </ci> </apply> <apply> <times/> <ci> m23 </ci> <ci> D </ci> </apply> </apply> <ci> cP7 </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cNI_m_trscr" name="function_4_cNI_m_trscr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cLm </ci> </bvar> <bvar> <ci> cP7 </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> g12 </ci> </bvar> <bvar> <ci> g13 </ci> </bvar> <bvar> <ci> l </ci> </bvar> <bvar> <ci> m </ci> </bvar> <bvar> <ci> n10 </ci> </bvar> <bvar> <ci> n11 </ci> </bvar> <apply> <divide/> <apply> <plus/> <apply> <divide/> <apply> <times/> <ci> n10 </ci> <apply> <power/> <ci> cLm </ci> <ci> l </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cLm </ci> <ci> l </ci> </apply> <apply> <power/> <ci> g12 </ci> <ci> l </ci> </apply> </apply> </apply> <apply> <divide/> <apply> <times/> <ci> n11 </ci> <apply> <power/> <ci> cP7 </ci> <ci> m </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cP7 </ci> <ci> m </ci> </apply> <apply> <power/> <ci> g13 </ci> <ci> m </ci> </apply> </apply> </apply> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cNI_m_degr" name="function_4_cNI_m_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cNI_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m16 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m16 </ci> <ci> cNI_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cNI_trsl" name="function_4_cNI_trsl"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cNI_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p10 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> p10 </ci> <ci> cNI_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cNI_degr" name="function_4_cNI_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> D </ci> </bvar> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cNI </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m17 </ci> </bvar> <bvar> <ci> m24 </ci> </bvar> <apply> <divide/> <apply> <times/> <apply> <plus/> <apply> <times/> <ci> m17 </ci> <ci> L </ci> </apply> <apply> <times/> <ci> m24 </ci> <ci> D </ci> </apply> </apply> <ci> cNI </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cG_m_trscr" name="function_4_cG_m_trscr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cL </ci> </bvar> <bvar> <ci> cP </ci> </bvar> <bvar> <ci> cT </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> g14 </ci> </bvar> <bvar> <ci> g15 </ci> </bvar> <bvar> <ci> n </ci> </bvar> <bvar> <ci> n12 </ci> </bvar> <bvar> <ci> o </ci> </bvar> <bvar> <ci> q4 </ci> </bvar> <apply> <divide/> <apply> <plus/> <apply> <times/> <ci> L </ci> <ci> q4 </ci> <ci> cP </ci> </apply> <apply> <divide/> <apply> <times/> <apply> <divide/> <apply> <times/> <ci> n12 </ci> <ci> L </ci> <apply> <power/> <ci> g15 </ci> <ci> o </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cL </ci> <ci> o </ci> </apply> <apply> <power/> <ci> g15 </ci> <ci> o </ci> </apply> </apply> </apply> <apply> <power/> <ci> g14 </ci> <ci> n </ci> </apply> </apply> <apply> <plus/> <apply> <power/> <ci> cT </ci> <ci> n </ci> </apply> <apply> <power/> <ci> g14 </ci> <ci> n </ci> </apply> </apply> </apply> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cG_m_degr" name="function_4_cG_m_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cG_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m18 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m18 </ci> <ci> cG_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cG_trsl" name="function_4_cG_trsl"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cG_m </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p11 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> p11 </ci> <ci> cG_m </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cG_degr" name="function_4_cG_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cG </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m19 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m19 </ci> <ci> cG </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cG_cZTL_assoc" name="function_4_cG_cZTL_assoc"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> D </ci> </bvar> <bvar> <ci> L </ci> </bvar> <bvar> <ci> cG </ci> </bvar> <bvar> <ci> cZG </ci> </bvar> <bvar> <ci> cZTL </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p12 </ci> </bvar> <bvar> <ci> p13 </ci> </bvar> <apply> <divide/> <apply> <minus/> <apply> <times/> <ci> p12 </ci> <ci> L </ci> <ci> cZTL </ci> <ci> cG </ci> </apply> <apply> <times/> <ci> p13 </ci> <ci> D </ci> <ci> cZG </ci> </apply> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cZTL_trsl" name="function_4_cZTL_trsl"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> def </ci> </bvar> <bvar> <ci> p14 </ci> </bvar> <apply> <divide/> <ci> p14 </ci> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cZTL_degr" name="function_4_cZTL_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cZTL </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m20 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m20 </ci> <ci> cZTL </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> <functionDefinition id="function_4_cZG_degr" name="function_4_cZG_degr"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> cZG </ci> </bvar> <bvar> <ci> def </ci> </bvar> <bvar> <ci> m21 </ci> </bvar> <apply> <divide/> <apply> <times/> <ci> m21 </ci> <ci> cZG </ci> </apply> <ci> def </ci> </apply> </lambda> </math> </functionDefinition> </listOfFunctionDefinitions> <listOfUnitDefinitions> <unitDefinition metaid="metaid_0000042" id="substance"> <listOfUnits> <unit kind="item"/> </listOfUnits> </unitDefinition> <unitDefinition id="volume"> <listOfUnits> <unit kind="litre" scale="-12"/> </listOfUnits> </unitDefinition> <unitDefinition id="time" name="time"> <listOfUnits> <unit kind="second" multiplier="3600"/> </listOfUnits> </unitDefinition> </listOfUnitDefinitions> <listOfCompartments> <compartment metaid="metaid_0000142" id="def" name="def" size="1"/> </listOfCompartments> <listOfSpecies> <species metaid="metaid_0000143" id="cG" name="cG" compartment="def" initialConcentration="0.0238"/> <species metaid="metaid_0000144" id="cG_m" name="cG_m" compartment="def" initialConcentration="0.119"/> <species metaid="metaid_0000145" id="cL" name="cL" compartment="def" initialConcentration="0.416"/> <species metaid="metaid_0000146" id="cL_m" name="cL_m" compartment="def" initialConcentration="1"/> <species metaid="metaid_0000147" id="cLm" name="cLm" compartment="def" initialConcentration="0.054"/> <species metaid="metaid_0000148" id="cNI" name="cNI" compartment="def" initialConcentration="0.044"/> <species metaid="metaid_0000149" id="cNI_m" name="cNI_m" compartment="def" initialConcentration="0.0065"/> <species metaid="metaid_0000150" id="cP" name="cP" compartment="def" initialConcentration="0.825"/> <species metaid="metaid_0000151" id="cP7" name="cP7" compartment="def" initialConcentration="0.019"/> <species metaid="metaid_0000152" id="cP7_m" name="cP7_m" compartment="def" initialConcentration="0.075"/> <species metaid="metaid_0000153" id="cP9" name="cP9" compartment="def" initialConcentration="0.056"/> <species metaid="metaid_0000154" id="cP9_m" name="cP9_m" compartment="def" initialConcentration="0.35"/> <species metaid="metaid_0000155" id="cT" name="cT" compartment="def" initialConcentration="0.393"/> <species metaid="metaid_0000156" id="cT_m" name="cT_m" compartment="def" initialConcentration="0.25"/> <species metaid="metaid_0000157" id="cTm" name="cTm" compartment="def" initialConcentration="0.24"/> <species metaid="metaid_0000158" id="cY" name="cY" compartment="def" initialConcentration="0.1"/> <species metaid="metaid_0000159" id="cY_m" name="cY_m" compartment="def" initialConcentration="0.093"/> <species metaid="metaid_0000160" id="cZG" name="cZG" compartment="def" initialConcentration="0.0774"/> <species metaid="metaid_0000161" id="cZTL" name="cZTL" compartment="def" initialConcentration="0.323"/> </listOfSpecies> <listOfParameters> <parameter metaid="metaid_0000043" id="n0" name="n0" value="0.4"/> <parameter metaid="metaid_0000044" id="n1" name="n1" value="1.8"/> <parameter metaid="metaid_0000045" id="n2" name="n2" value="0.7"/> <parameter metaid="metaid_0000046" id="n3" name="n3" value="0.06"/> <parameter metaid="metaid_0000047" id="n4" name="n4" value="0"/> <parameter metaid="metaid_0000048" id="n5" name="n5" value="3.4"/> <parameter metaid="metaid_0000049" id="n6" name="n6" value="1.25"/> <parameter metaid="metaid_0000050" id="n7" name="n7" value="0.2"/> <parameter metaid="metaid_0000051" id="n8" name="n8" value="0.42"/> <parameter metaid="metaid_0000052" id="n9" name="n9" value="0.26"/> <parameter metaid="metaid_0000053" id="n10" name="n10" value="0.18"/> <parameter metaid="metaid_0000054" id="n11" name="n11" value="0.71"/> <parameter metaid="metaid_0000055" id="n12" name="n12" value="2.3"/> <parameter metaid="metaid_0000056" id="g1" name="g1" value="0.1"/> <parameter metaid="metaid_0000057" id="g2" name="g2" value="0.28"/> <parameter metaid="metaid_0000058" id="g3" name="g3" value="0.4"/> <parameter metaid="metaid_0000059" id="g4" name="g4" value="0.91"/> <parameter metaid="metaid_0000060" id="g5" name="g5" value="0.3"/> <parameter metaid="metaid_0000061" id="g6" name="g6" value="0.3"/> <parameter metaid="metaid_0000062" id="g7" name="g7" value="0.18"/> <parameter metaid="metaid_0000063" id="g8" name="g8" value="0.14"/> <parameter metaid="metaid_0000064" id="g9" name="g9" value="0.3"/> <parameter metaid="metaid_0000065" id="g10" name="g10" value="0.7"/> <parameter metaid="metaid_0000066" id="g11" name="g11" value="0.7"/> <parameter metaid="metaid_0000067" id="g12" name="g12" value="0.5"/> <parameter metaid="metaid_0000068" id="g13" name="g13" value="0.6"/> <parameter metaid="metaid_0000069" id="g14" name="g14" value="0.17"/> <parameter metaid="metaid_0000070" id="g15" name="g15" value="0.4"/> <parameter metaid="metaid_0000071" id="g16" name="g16" value="0.2"/> <parameter metaid="metaid_0000072" id="m1" name="m1" value="0.54"/> <parameter metaid="metaid_0000073" id="m2" name="m2" value="0.24"/> <parameter metaid="metaid_0000074" id="m3" name="m3" value="0.2"/> <parameter metaid="metaid_0000075" id="m4" name="m4" value="0.2"/> <parameter metaid="metaid_0000076" id="m5" name="m5" value="0.3"/> <parameter metaid="metaid_0000077" id="m6" name="m6" value="0.25"/> <parameter metaid="metaid_0000078" id="m7" name="m7" value="0.5"/> <parameter metaid="metaid_0000079" id="m8" name="m8" value="0.1"/> <parameter metaid="metaid_0000080" id="m9" name="m9" value="1"/> <parameter metaid="metaid_0000081" id="m10" name="m10" value="0.3"/> <parameter metaid="metaid_0000082" id="m11" name="m11" value="1"/> <parameter metaid="metaid_0000083" id="m12" name="m12" value="1"/> <parameter metaid="metaid_0000084" id="m13" name="m13" value="0.32"/> <parameter metaid="metaid_0000085" id="m14" name="m14" value="0.28"/> <parameter metaid="metaid_0000086" id="m15" name="m15" value="0.31"/> <parameter metaid="metaid_0000087" id="m16" name="m16" value="0.5"/> <parameter metaid="metaid_0000088" id="m17" name="m17" value="0.3"/> <parameter metaid="metaid_0000089" id="m18" name="m18" value="1"/> <parameter metaid="metaid_0000090" id="m19" name="m19" value="0.2"/> <parameter metaid="metaid_0000091" id="m20" name="m20" value="1.2"/> <parameter metaid="metaid_0000092" id="m21" name="m21" value="0.2"/> <parameter metaid="metaid_0000093" id="m22" name="m22" value="2"/> <parameter metaid="metaid_0000094" id="m23" name="m23" value="1"/> <parameter metaid="metaid_0000095" id="m24" name="m24" value="0.405"/> <parameter metaid="metaid_0000096" id="m25" name="m25" value="0.28"/> <parameter metaid="metaid_0000097" id="m26" name="m26" value="0.14"/> <parameter metaid="metaid_0000098" id="a" name="a" value="2"/> <parameter metaid="metaid_0000099" id="b" name="b" value="3"/> <parameter metaid="metaid_0000100" id="c" name="c" value="3"/> <parameter metaid="metaid_0000101" id="d" name="d" value="2.5"/> <parameter metaid="metaid_0000102" id="e" name="e" value="2"/> <parameter metaid="metaid_0000103" id="f" name="f" value="3"/> <parameter metaid="metaid_0000104" id="h" name="h" value="2"/> <parameter metaid="metaid_0000105" id="g" name="g" value="2"/> <parameter metaid="metaid_0000106" id="i" name="i" value="3"/> <parameter metaid="metaid_0000107" id="j" name="j" value="3"/> <parameter metaid="metaid_0000108" id="k" name="k" value="3"> <annotation> <COPASI xmlns="http://www.copasi.org/static/sbml"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/"> <rdf:Description rdf:about="#metaid_0000108"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2011-10-31T14:03:52Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </COPASI> </annotation> </parameter> <parameter metaid="metaid_0000109" id="l" name="l" value="2"/> <parameter metaid="metaid_0000110" id="m" name="m" value="2"/> <parameter metaid="metaid_0000111" id="n" name="n" value="1"/> <parameter metaid="metaid_0000112" id="o" name="o" value="2"/> <parameter metaid="metaid_0000113" id="s" name="s" value="3"/> <parameter metaid="metaid_0000114" id="p1" name="p1" value="0.4"/> <parameter metaid="metaid_0000115" id="p2" name="p2" value="0.27"/> <parameter metaid="metaid_0000116" id="p3" name="p3" value="0.1"/> <parameter metaid="metaid_0000117" id="p4" name="p4" value="0.268"/> <parameter metaid="metaid_0000118" id="p5" name="p5" value="1"/> <parameter metaid="metaid_0000119" id="p6" name="p6" value="0.44"/> <parameter metaid="metaid_0000120" id="p7" name="p7" value="0.3"/> <parameter metaid="metaid_0000121" id="p8" name="p8" value="0.7"/> <parameter metaid="metaid_0000122" id="p9" name="p9" value="0.4"/> <parameter metaid="metaid_0000123" id="p10" name="p10" value="0.36"/> <parameter metaid="metaid_0000124" id="p11" name="p11" value="0.23"/> <parameter metaid="metaid_0000125" id="p12" name="p12" value="30"/> <parameter metaid="metaid_0000126" id="p13" name="p13" value="0.4"/> <parameter metaid="metaid_0000127" id="p14" name="p14" value="0.45"/> <parameter metaid="metaid_0000128" id="p15" name="p15" value="0.05"/> <parameter metaid="metaid_0000129" id="q1" name="q1" value="0.8"/> <parameter metaid="metaid_0000130" id="q2" name="q2" value="0.5"/> <parameter metaid="metaid_0000131" id="q3" name="q3" value="2.9"/> <parameter metaid="metaid_0000132" id="q4" name="q4" value="0.6"/> <parameter metaid="metaid_0000133" id="dawn" name="dawn" value="0"/> <parameter metaid="metaid_0000134" id="dusk" name="dusk" value="12"/> <parameter metaid="metaid_0000135" id="dawn1" name="dawn1" value="0"/> <parameter metaid="metaid_0000136" id="dusk1" name="dusk1" value="3"/> <parameter metaid="metaid_0000137" id="dawn2" name="dawn2" value="9"/> <parameter metaid="metaid_0000138" id="dusk2" name="dusk2" value="12"/> <parameter metaid="metaid_0000139" id="L" name="L" value="0.5" constant="false"> <annotation> <COPASI xmlns="http://www.copasi.org/static/sbml"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/"> <rdf:Description rdf:about="#metaid_0000139"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2011-10-31T14:00:34Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </COPASI> </annotation> </parameter> <parameter metaid="metaid_0000140" id="D" name="D" value="0.5" constant="false"/> <parameter metaid="metaid_0000141" id="parameter_1" name="quantity" value="0.5"/> </listOfParameters> <listOfRules> <assignmentRule metaid="metaid_0000163" variable="L"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <cn> 0.5 </cn> <apply> <plus/> <apply> <minus/> <apply> <plus/> <cn> 1 </cn> <apply> <tanh/> <apply> <divide/> <apply> <minus/> <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol> <apply> <times/> <cn> 24 </cn> <apply> <floor/> <apply> <minus/> <apply> <divide/> <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol> <cn> 24 </cn> </apply> <ci> dawn </ci> </apply> </apply> </apply> </apply> <cn> 0.5 </cn> </apply> </apply> </apply> <apply> <plus/> <cn> 1 </cn> <apply> <tanh/> <apply> <divide/> <apply> <minus/> <apply> <minus/> <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol> <apply> <times/> <cn> 24 </cn> <apply> <floor/> <apply> <divide/> <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol> <cn> 24 </cn> </apply> </apply> </apply> </apply> <ci> dusk </ci> </apply> <cn> 0.5 </cn> </apply> </apply> </apply> </apply> <cn> 1 </cn> <apply> <tanh/> <apply> <divide/> <apply> <minus/> <apply> <minus/> <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol> <apply> <times/> <cn> 24 </cn> <apply> <floor/> <apply> <divide/> <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol> <cn> 24 </cn> </apply> </apply> </apply> </apply> <cn> 24 </cn> </apply> <cn> 0.5 </cn> </apply> </apply> </apply> </apply> </math> </assignmentRule> <assignmentRule metaid="metaid_0000164" variable="D"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <cn type="integer"> 1 </cn> <ci> L </ci> </apply> </math> </assignmentRule> </listOfRules> <listOfConstraints> <constraint> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <and/> <apply> <lt/> <ci> a </ci> <cn> 5 </cn> </apply> <apply> <gt/> <ci> a </ci> <cn> 0 </cn> </apply> </apply> </math> </constraint> <constraint> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <and/> <apply> <lt/> <ci> b </ci> <cn> 5 </cn> </apply> <apply> <gt/> <ci> b </ci> <cn> 0 </cn> </apply> </apply> </math> </constraint> <constraint> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <and/> <apply> <lt/> <ci> c </ci> <cn> 5 </cn> </apply> <apply> <gt/> <ci> c </ci> <cn> 0 </cn> </apply> </apply> </math> </constraint> </listOfConstraints> <listOfReactions> <reaction metaid="metaid_0000165" id="cL_m_trscr" name="cL_m_trscr" reversible="false"> <listOfProducts> <speciesReference species="cL_m"/> </listOfProducts> <listOfModifiers> <modifierSpeciesReference species="cNI"/> <modifierSpeciesReference species="cP"/> <modifierSpeciesReference species="cP7"/> <modifierSpeciesReference species="cP9"/> <modifierSpeciesReference species="cTm"/> </listOfModifiers> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> def </ci> <apply> <ci> function_4_cL_m_trscr </ci> <ci> L </ci> <ci> a </ci> 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