<?xml version="1.0" encoding="UTF-8"?> <!-- Created by JWS2SBML on 2008/05/27 18:15:58--> <sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1"> <model name="bakker"> <listOfCompartments> <compartment id="compartment" name="compartment" size="1"/> </listOfCompartments> <listOfSpecies> <species id="GlcI" name="GlcI" compartment="compartment" initialConcentration="0"/> <species id="Pg" name="Pg" compartment="compartment" initialConcentration="1"/> <species id="Glc6P" name="Glc6P" compartment="compartment" initialConcentration="1"/> <species id="Fru6P" name="Fru6P" compartment="compartment" initialConcentration="1"/> <species id="Fru16BP" name="Fru16BP" compartment="compartment" initialConcentration="10"/> <species id="DHAP" name="DHAP" compartment="compartment" initialConcentration="1"/> <species id="GAP" name="GAP" compartment="compartment" initialConcentration="0"/> <species id="NADH" name="NADH" compartment="compartment" initialConcentration="0"/> <species id="Gly3P" name="Gly3P" compartment="compartment" initialConcentration="0" boundaryCondition="true" constant="true"/> <species id="NAD" name="NAD" compartment="compartment" initialConcentration="4"/> <species id="Pyr" name="Pyr" compartment="compartment" initialConcentration="1"/> <species id="PyrE" name="PyrE" compartment="compartment" initialConcentration="0" boundaryCondition="true" constant="true"/> <species id="BPGA13" name="BPGA13" compartment="compartment" initialConcentration="0"/> <species id="Nb" name="Nb" compartment="compartment" initialConcentration="1"/> <species id="Pc" name="Pc" compartment="compartment" initialConcentration="1"/> <species id="X" name="X" compartment="compartment" initialConcentration="0" boundaryCondition="true" constant="true"/> <species id="Gly" name="Gly" compartment="compartment" initialConcentration="0" boundaryCondition="true" constant="true"/> <species id="GlcE" name="GlcE" compartment="compartment" initialConcentration="5" boundaryCondition="true" constant="true"/> </listOfSpecies> <listOfParameters> <parameter id="ag" constant="false"/> <parameter id="ATPg" constant="false"/> <parameter id="ADPg" constant="false"/> <parameter id="rsum" constant="false"/> <parameter id="DHAPc" constant="false"/> <parameter id="DHAPg" constant="false"/> <parameter id="AMPg" constant="false"/> <parameter id="K5Fru16BP" constant="false"/> <parameter id="Gly3Pg" constant="false"/> <parameter id="Gly3Pc" constant="false"/> <parameter id="PGA3" constant="false"/> <parameter id="PEP" constant="false"/> <parameter id="ac" constant="false"/> <parameter id="ATPc" constant="false"/> <parameter id="ADPc" constant="false"/> <parameter id="K12PEP" constant="false"/> <parameter id="Vm1" name="Vm1" value="106.2"/> <parameter id="K1Glc" name="K1Glc" value="2"/> <parameter id="afac" name="afac" value="0.75"/> <parameter id="Vm2" name="Vm2" value="625"/> <parameter id="K2GlcI" name="K2GlcI" value="0.1"/> <parameter id="K2Glc6P" name="K2Glc6P" value="12"/> <parameter id="K2ATPg" name="K2ATPg" value="0.116"/> <parameter id="K2ADPg" name="K2ADPg" value="0.126"/> <parameter id="Vm3" name="Vm3" value="848"/> <parameter id="K3Glc6P" name="K3Glc6P" value="0.4"/> <parameter id="K3Fru6P" name="K3Fru6P" value="0.12"/> <parameter id="Vm4" name="Vm4" value="780"/> <parameter id="K4ATPg" name="K4ATPg" value="0.026"/> <parameter id="K4Fru6P" name="K4Fru6P" value="0.82"/> <parameter id="K4i1Fru16BP" name="K4i1Fru16BP" value="15.8"/> <parameter id="K4i2Fru16BP" name="K4i2Fru16BP" value="10.7"/> <parameter id="Vm5f" name="Vm5f" value="184.5"/> <parameter id="Vm5r" name="Vm5r" value="219.555"/> <parameter id="Vm5" name="Vm5" value="1"/> <parameter id="K5GAP" name="K5GAP" value="0.067"/> <parameter id="K5DHAP" name="K5DHAP" value="0.015"/> <parameter id="K5i" name="K5i" value="0.098"/> <parameter id="Vm6" name="Vm6" value="842"/> <parameter id="K6DHAPg" name="K6DHAPg" value="1.2"/> <parameter id="K6GAP" name="K6GAP" value="0.25"/> <parameter id="Vm7f" name="Vm7f" value="1470"/> <parameter id="Vm7r" name="Vm7r" value="984.9"/> <parameter id="Vm7" name="Vm7" value="1"/> <parameter id="K7GAP" name="K7GAP" value="0.15"/> <parameter id="K7NAD" name="K7NAD" value="0.45"/> <parameter id="K7NADH" name="K7NADH" value="0.02"/> <parameter id="K7BPGA13" name="K7BPGA13" value="0.1"/> <parameter id="Vm8f" name="Vm8f" value="533"/> <parameter id="Vm8r" name="Vm8r" value="149.24"/> <parameter id="Vm8" name="Vm8" value="1"/> <parameter id="K8DHAPg" name="K8DHAPg" value="0.1"/> <parameter id="K8NADH" name="K8NADH" value="0.01"/> <parameter id="K8NAD" name="K8NAD" value="0.4"/> <parameter id="K8Gly3Pg" name="K8Gly3Pg" value="2"/> <parameter id="Vm9" name="Vm9" value="368"/> <parameter id="K9Gly3Pc" name="K9Gly3Pc" value="1.7"/> <parameter id="Vm10" name="Vm10" value="200"/> <parameter id="K10Pyr" name="K10Pyr" value="1.96"/> <parameter id="Vm11f" name="Vm11f" value="640"/> <parameter id="Vm11r" name="Vm11r" value="18.56"/> <parameter id="Vm11" name="Vm11" value="1"/> <parameter id="K11BPGA13" name="K11BPGA13" value="0.05"/> <parameter id="K11ADPg" name="K11ADPg" value="0.1"/> <parameter id="K11PGA3" name="K11PGA3" value="1.62"/> <parameter id="K11ATPg" name="K11ATPg" value="0.29"/> <parameter id="Vm12" name="Vm12" value="2600"/> <parameter id="K12ADP" name="K12ADP" value="0.114"/> <parameter id="n12" name="n12" value="2.5"/> <parameter id="K13" name="K13" value="50"/> <parameter id="Vm14f" name="Vm14f" value="200"/> <parameter id="Vm14r" name="Vm14r" value="33400"/> <parameter id="Vm14" name="Vm14" value="1"/> <parameter id="K14Gly3Pg" name="K14Gly3Pg" value="5.1"/> <parameter id="K14Gly" name="K14Gly" value="0.12"/> <parameter id="K14ATPg" name="K14ATPg" value="0.19"/> <parameter id="K14ADPg" name="K14ADPg" value="0.12"/> <parameter id="sumAc" name="sumAc" value="3.9"/> <parameter id="sumAg" name="sumAg" value="6"/> <parameter id="sumc4" name="sumc4" value="45"/> <parameter id="sumc5" name="sumc5" value="5"/> <parameter id="Vc" name="Vc" value="5.4549"/> <parameter id="Vg" name="Vg" value="0.2451"/> <parameter id="Vt" name="Vt" value="5.7"/> <parameter id="KeqAK" name="KeqAK" value="0.442"/> <parameter id="KeqPGM" name="KeqPGM" value="0.187"/> <parameter id="KeqENO" name="KeqENO" value="6.7"/> <parameter id="DHAPct0" name="DHAPct0" value="4.01536"/> </listOfParameters> <listOfRules> <assignmentRule variable="ag"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <cn type="integer"> 1 </cn> <apply> <times/> <cn type="integer"> 4 </cn> <ci> KeqAK </ci> </apply> </apply> </math> </assignmentRule> <assignmentRule variable="ATPg"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <divide/> <apply> <plus/> <apply> <minus/> <apply> <minus/> <ci> sumAg </ci> <apply> <times/> <ci> Pg </ci> <ci> ag </ci> </apply> </apply> </apply> <apply> <power/> <apply> <minus/> <apply> <times/> <apply> <minus/> <ci> sumAg </ci> <apply> <times/> <ci> Pg </ci> <ci> ag </ci> </apply> </apply> <apply> <minus/> <ci> sumAg </ci> <apply> <times/> <ci> Pg </ci> <ci> ag </ci> </apply> </apply> </apply> <apply> <times/> <cn type="integer"> 4 </cn> <ci> ag </ci> <apply> <minus/> <ci> KeqAK </ci> </apply> <ci> Pg </ci> <ci> Pg </ci> </apply> </apply> <cn> 0.5 </cn> </apply> </apply> <cn type="integer"> 2 </cn> </apply> <ci> ag </ci> </apply> </math> </assignmentRule> <assignmentRule variable="ADPg"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <ci> Pg </ci> <apply> <times/> <cn type="integer"> 2 </cn> <ci> ATPg </ci> </apply> </apply> </math> </assignmentRule> <assignmentRule variable="rsum"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <apply> <minus/> <apply> <minus/> <apply> <minus/> <apply> <minus/> <apply> <minus/> <ci> sumc4 </ci> <ci> Glc6P </ci> </apply> <ci> Fru6P </ci> </apply> <apply> <times/> <cn type="integer"> 2 </cn> <ci> Fru16BP </ci> </apply> </apply> <ci> GAP </ci> </apply> <ci> BPGA13 </ci> </apply> <ci> Pg </ci> </apply> </math> </assignmentRule> <assignmentRule variable="DHAPc"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> sumc5 </ci> <ci> DHAP </ci> <apply> <plus/> <apply> <divide/> <ci> Vc </ci> <ci> Vg </ci> </apply> <cn type="integer"> 1 </cn> </apply> </apply> <apply> <plus/> <apply> <divide/> <apply> <times/> <ci> sumc5 </ci> <ci> Vc </ci> </apply> <ci> Vg </ci> </apply> <ci> rsum </ci> </apply> </apply> </math> </assignmentRule> <assignmentRule variable="DHAPg"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <minus/> <apply> <times/> <ci> DHAP </ci> <ci> Vt </ci> </apply> <apply> <times/> <ci> DHAPc </ci> <ci> Vc </ci> </apply> </apply> <ci> Vg </ci> </apply> </math> </assignmentRule> <assignmentRule variable="AMPg"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <apply> <minus/> <ci> sumAg </ci> <ci> ATPg </ci> </apply> <ci> ADPg </ci> </apply> </math> </assignmentRule> <assignmentRule variable="K5Fru16BP"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <cn> 0.009 </cn> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> ATPg </ci> <cn> 0.68 </cn> </apply> <apply> <divide/> <ci> ADPg </ci> <cn> 1.51 </cn> </apply> <apply> <divide/> <ci> AMPg </ci> <cn> 3.65 </cn> </apply> </apply> </apply> </math> </assignmentRule> <assignmentRule variable="Gly3Pg"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <apply> <minus/> <apply> <minus/> <apply> <minus/> <apply> <minus/> <apply> <minus/> <apply> <minus/> <ci> sumc4 </ci> <ci> DHAPg </ci> </apply> <ci> Glc6P </ci> </apply> <ci> Fru6P </ci> </apply> <apply> <times/> <cn type="integer"> 2 </cn> <ci> Fru16BP </ci> </apply> </apply> <ci> GAP </ci> </apply> <ci> BPGA13 </ci> </apply> <ci> Pg </ci> </apply> </math> </assignmentRule> <assignmentRule variable="Gly3Pc"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <ci> sumc5 </ci> <ci> DHAPc </ci> </apply> </math> </assignmentRule> <assignmentRule variable="PGA3"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Nb </ci> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> Vc </ci> <ci> Vg </ci> </apply> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <times/> <apply> <divide/> <ci> Vc </ci> <ci> Vg </ci> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <ci> KeqPGM </ci> <apply> <times/> <ci> KeqPGM </ci> <ci> KeqENO </ci> </apply> </apply> </apply> </apply> </apply> </math> </assignmentRule> <assignmentRule variable="PEP"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> PGA3 </ci> <ci> KeqPGM </ci> <ci> KeqENO </ci> </apply> </math> </assignmentRule> <assignmentRule variable="ac"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <cn type="integer"> 1 </cn> <apply> <times/> <cn type="integer"> 4 </cn> <ci> KeqAK </ci> </apply> </apply> </math> </assignmentRule> <assignmentRule variable="ATPc"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <divide/> <apply> <plus/> <apply> <minus/> <apply> <minus/> <ci> sumAc </ci> <apply> <times/> <ci> Pc </ci> <ci> ac </ci> </apply> </apply> </apply> <apply> <power/> <apply> <minus/> <apply> <times/> <apply> <minus/> <ci> sumAc </ci> <apply> <times/> <ci> Pc </ci> <ci> ac </ci> </apply> </apply> <apply> <minus/> <ci> sumAc </ci> <apply> <times/> <ci> Pc </ci> <ci> ac </ci> </apply> </apply> </apply> <apply> <times/> <cn type="integer"> 4 </cn> <ci> ac </ci> <apply> <minus/> <ci> KeqAK </ci> </apply> <ci> Pc </ci> <ci> Pc </ci> </apply> </apply> <cn> 0.5 </cn> </apply> </apply> <cn type="integer"> 2 </cn> </apply> <ci> ac </ci> </apply> </math> </assignmentRule> <assignmentRule variable="ADPc"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <ci> Pc </ci> <apply> <times/> <cn type="integer"> 2 </cn> <ci> ATPc </ci> </apply> </apply> </math> </assignmentRule> <assignmentRule variable="K12PEP"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <cn> 0.34 </cn> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> ATPc </ci> <cn> 0.57 </cn> </apply> <apply> <divide/> <ci> ADPc </ci> <cn> 0.64 </cn> </apply> </apply> </apply> </math> </assignmentRule> </listOfRules> <listOfReactions> <reaction id="vHK" name="vHK"> <listOfReactants> <speciesReference species="GlcI" stoichiometry="0.175439"/> <speciesReference species="Pg" stoichiometry="4.087719"/> </listOfReactants> <listOfProducts> <speciesReference species="Glc6P" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <divide/> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> Vm2 </ci> <ci> ATPg </ci> <ci> GlcI </ci> </apply> <ci> K2GlcI </ci> </apply> <ci> K2ATPg </ci> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> ATPg </ci> <ci> K2ATPg </ci> </apply> <apply> <divide/> <ci> ADPg </ci> <ci> K2ADPg </ci> </apply> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> GlcI </ci> <ci> K2GlcI </ci> </apply> <apply> <divide/> <ci> Glc6P </ci> <ci> K2Glc6P </ci> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vPGI" name="vPGI"> <listOfReactants> <speciesReference species="Glc6P" stoichiometry="4.087719"/> </listOfReactants> <listOfProducts> <speciesReference species="Fru6P" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vm3 </ci> <apply> <minus/> <apply> <divide/> <ci> Glc6P </ci> <ci> K3Glc6P </ci> </apply> <apply> <divide/> <ci> Fru6P </ci> <ci> K3Fru6P </ci> </apply> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> Glc6P </ci> <ci> K3Glc6P </ci> </apply> <apply> <divide/> <ci> Fru6P </ci> <ci> K3Fru6P </ci> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vPFK" name="vPFK"> <listOfReactants> <speciesReference species="Fru6P" stoichiometry="4.087719"/> <speciesReference species="Pg" stoichiometry="4.087719"/> </listOfReactants> <listOfProducts> <speciesReference species="Fru16BP" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> Vm4 </ci> <apply> <divide/> <apply> <divide/> <apply> <divide/> <apply> <times/> <apply> <divide/> <apply> <times/> <apply> <divide/> <ci> K4i1Fru16BP </ci> <apply> <plus/> <ci> K4i1Fru16BP </ci> <ci> Fru16BP </ci> </apply> </apply> <ci> Fru6P </ci> </apply> <ci> K4Fru6P </ci> </apply> <ci> ATPg </ci> </apply> <ci> K4ATPg </ci> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> Fru6P </ci> <ci> K4Fru6P </ci> </apply> <apply> <divide/> <ci> Fru16BP </ci> <ci> K4i2Fru16BP </ci> </apply> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> ATPg </ci> <ci> K4ATPg </ci> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vALD" name="vALD"> <listOfReactants> <speciesReference species="Fru16BP" stoichiometry="4.087719"/> </listOfReactants> <listOfProducts> <speciesReference species="DHAP" stoichiometry="0.175439"/> <speciesReference species="GAP" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vm5 </ci> <apply> <minus/> <apply> <divide/> <apply> <times/> <ci> Vm5f </ci> <ci> Fru16BP </ci> </apply> <ci> K5Fru16BP </ci> </apply> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> Vm5r </ci> <ci> GAP </ci> <ci> DHAPg </ci> </apply> <ci> K5GAP </ci> </apply> <ci> K5DHAP </ci> </apply> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> Fru16BP </ci> <ci> K5Fru16BP </ci> </apply> <apply> <divide/> <ci> GAP </ci> <ci> K5GAP </ci> </apply> <apply> <divide/> <ci> DHAPg </ci> <ci> K5DHAP </ci> </apply> <apply> <divide/> <apply> <times/> <apply> <divide/> <ci> Fru16BP </ci> <ci> K5Fru16BP </ci> </apply> <ci> GAP </ci> </apply> <ci> K5i </ci> </apply> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> GAP </ci> <ci> DHAPg </ci> </apply> <ci> K5GAP </ci> </apply> <ci> K5DHAP </ci> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vTPI" name="vTPI"> <listOfReactants> <speciesReference species="DHAP" stoichiometry="0.175439"/> </listOfReactants> <listOfProducts> <speciesReference species="GAP" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vm6 </ci> <apply> <minus/> <apply> <divide/> <ci> DHAPg </ci> <ci> K6DHAPg </ci> </apply> <apply> <divide/> <apply> <times/> <cn> 5.7 </cn> <ci> GAP </ci> </apply> <ci> K6GAP </ci> </apply> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> DHAPg </ci> <ci> K6DHAPg </ci> </apply> <apply> <divide/> <ci> GAP </ci> <ci> K6GAP </ci> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vGDH" name="vGDH"> <listOfReactants> <speciesReference species="DHAP" stoichiometry="0.175439"/> <speciesReference species="NADH" stoichiometry="4.087719"/> </listOfReactants> <listOfProducts> <speciesReference species="Gly3P"/> <speciesReference species="NAD" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> Vm8 </ci> <apply> <divide/> <apply> <times/> <ci> Vm8f </ci> <apply> <minus/> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> DHAPg </ci> <ci> NADH </ci> </apply> <ci> K8DHAPg </ci> </apply> <ci> K8NADH </ci> </apply> <apply> <times/> <apply> <divide/> <ci> Vm8r </ci> <ci> Vm8f </ci> </apply> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> NAD </ci> <ci> Gly3Pg </ci> </apply> <ci> K8NAD </ci> </apply> <ci> K8Gly3Pg </ci> </apply> </apply> </apply> </apply> <apply> <times/> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> DHAPg </ci> <ci> K8DHAPg </ci> </apply> <apply> <divide/> <ci> Gly3Pg </ci> <ci> K8Gly3Pg </ci> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> NADH </ci> <ci> K8NADH </ci> </apply> <apply> <divide/> <ci> NAD </ci> <ci> K8NAD </ci> </apply> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vGPO" name="vGPO"> <listOfReactants> <speciesReference species="Gly3P"/> </listOfReactants> <listOfProducts> <speciesReference species="DHAP" stoichiometry="0.175439"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vm9 </ci> <apply> <divide/> <ci> Gly3Pc </ci> <ci> K9Gly3Pc </ci> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> Gly3Pc </ci> <ci> K9Gly3Pc </ci> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vPyrTr" name="vPyrTr"> <listOfReactants> <speciesReference species="Pyr" stoichiometry="0.183306"/> </listOfReactants> <listOfProducts> <speciesReference species="PyrE"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> Vm10 </ci> <ci> Pyr </ci> </apply> <ci> K10Pyr </ci> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> Pyr </ci> <ci> K10Pyr </ci> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vPGK" name="vPGK"> <listOfReactants> <speciesReference species="BPGA13" stoichiometry="4.087719"/> </listOfReactants> <listOfProducts> <speciesReference species="Nb" stoichiometry="0.175439"/> <speciesReference species="Pg" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> Vm11 </ci> <apply> <divide/> <apply> <times/> <ci> Vm11f </ci> <apply> <minus/> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> BPGA13 </ci> <ci> ADPg </ci> </apply> <ci> K11BPGA13 </ci> </apply> <ci> K11ADPg </ci> </apply> <apply> <divide/> <apply> <divide/> <apply> <times/> <apply> <divide/> <ci> Vm11r </ci> <ci> Vm11f </ci> </apply> <ci> PGA3 </ci> <ci> ATPg </ci> </apply> <ci> K11PGA3 </ci> </apply> <ci> K11ATPg </ci> </apply> </apply> </apply> <apply> <times/> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> BPGA13 </ci> <ci> K11BPGA13 </ci> </apply> <apply> <divide/> <ci> PGA3 </ci> <ci> K11PGA3 </ci> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> ADPg </ci> <ci> K11ADPg </ci> </apply> <apply> <divide/> <ci> ATPg </ci> <ci> K11ATPg </ci> </apply> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vPK" name="vPK"> <listOfReactants> <speciesReference species="Nb" stoichiometry="0.175439"/> </listOfReactants> <listOfProducts> <speciesReference species="Pc" stoichiometry="0.183306"/> <speciesReference species="Pyr" stoichiometry="0.183306"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> Vm12 </ci> <apply> <divide/> <apply> <divide/> <apply> <divide/> <apply> <times/> <apply> <power/> <apply> <divide/> <ci> PEP </ci> <ci> K12PEP </ci> </apply> <ci> n12 </ci> </apply> <ci> ADPc </ci> </apply> <ci> K12ADP </ci> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <power/> <apply> <divide/> <ci> PEP </ci> <ci> K12PEP </ci> </apply> <ci> n12 </ci> </apply> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> ADPc </ci> <ci> K12ADP </ci> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vATPase" name="vATPase"> <listOfReactants> <speciesReference species="Pc" stoichiometry="0.183306"/> </listOfReactants> <listOfProducts> <speciesReference species="X"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> K13 </ci> <ci> ATPc </ci> </apply> <ci> ADPc </ci> </apply> </math> </kineticLaw> </reaction> <reaction id="vGlyK" name="vGlyK"> <listOfReactants> <speciesReference species="X"/> </listOfReactants> <listOfProducts> <speciesReference species="Gly"/> <speciesReference species="Pg" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vm14 </ci> <apply> <minus/> <apply> <times/> <ci> Vm14f </ci> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> Gly3Pg </ci> <ci> ADPg </ci> </apply> <ci> K14Gly3Pg </ci> </apply> <ci> K14ADPg </ci> </apply> </apply> <apply> <times/> <ci> Vm14r </ci> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> Gly </ci> <ci> ATPg </ci> </apply> <ci> K14Gly </ci> </apply> <ci> K14ATPg </ci> </apply> </apply> </apply> </apply> <apply> <times/> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> Gly3Pg </ci> <ci> K14Gly3Pg </ci> </apply> <apply> <divide/> <ci> Gly </ci> <ci> K14Gly </ci> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> ADPg </ci> <ci> K14ADPg </ci> </apply> <apply> <divide/> <ci> ATPg </ci> <ci> K14ATPg </ci> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vGlcTr" name="vGlcTr"> <listOfReactants> <speciesReference species="GlcE"/> </listOfReactants> <listOfProducts> <speciesReference species="GlcI" stoichiometry="0.175439"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vm1 </ci> <apply> <minus/> <ci> GlcE </ci> <ci> GlcI </ci> </apply> </apply> <apply> <plus/> <ci> K1Glc </ci> <ci> GlcE </ci> <ci> GlcI </ci> <apply> <divide/> <apply> <times/> <ci> afac </ci> <ci> GlcE </ci> <ci> GlcI </ci> </apply> <ci> K1Glc </ci> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction id="vGAPdh" name="vGAPdh"> <listOfReactants> <speciesReference species="GAP" stoichiometry="4.087719"/> <speciesReference species="NAD" stoichiometry="4.087719"/> </listOfReactants> <listOfProducts> <speciesReference species="BPGA13" stoichiometry="4.087719"/> <speciesReference species="NADH" stoichiometry="4.087719"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> Vm7 </ci> <apply> <divide/> <apply> <times/> <ci> Vm7f </ci> <apply> <minus/> <apply> <times/> <ci> GAP </ci> <apply> <divide/> <apply> <divide/> <ci> NAD </ci> <ci> K7GAP </ci> </apply> <ci> K7NAD </ci> </apply> </apply> <apply> <times/> <apply> <divide/> <ci> Vm7r </ci> <ci> Vm7f </ci> </apply> <apply> <divide/> <apply> <divide/> <apply> <times/> <ci> BPGA13 </ci> <ci> NADH </ci> </apply> <ci> K7BPGA13 </ci> </apply> <ci> K7NADH </ci> </apply> </apply> </apply> </apply> <apply> <times/> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> GAP </ci> <ci> K7GAP </ci> </apply> <apply> <divide/> <ci> BPGA13 </ci> <ci> K7BPGA13 </ci> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <divide/> <ci> NAD </ci> <ci> K7NAD </ci> </apply> <apply> <divide/> <ci> NADH </ci> <ci> K7NADH </ci> </apply> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> </listOfReactions> </model></sbml>