<?xml version="1.0" encoding="UTF-8"?> <sbml level="2" version="4" xmlns="http://www.sbml.org/sbml/level2" xmlns:html="http://www.w3.org/1999/xhtml"> <model id="Unnamed model - L-fucose_Xanthomonas-like" name="Unnamed model - L-fucose_Xanthomonas-like"> <listOfUnitDefinitions> <unitDefinition id="mmol_per_gDW_per_hr"> <listOfUnits> <unit kind="mole" scale="-3"/> <unit exponent="-1" kind="gram"/> <unit exponent="-1" kind="second" multiplier="0.00027777"/> </listOfUnits> </unitDefinition> </listOfUnitDefinitions> <listOfCompartments> <compartment id="cytosol"/> <compartment id="extracellular"/> </listOfCompartments> <listOfSpecies> <species boundaryCondition="false" compartment="cytosol" id="dGMP" name="dGMP"/> <species boundaryCondition="false" compartment="cytosol" id="dAMP" name="dAMP"/> <species boundaryCondition="false" compartment="cytosol" id="dTMP" name="dTMP"/> <species boundaryCondition="false" compartment="cytosol" id="dCMP" name="dCMP"/> <species boundaryCondition="false" 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name="L-glutamine"/> <species boundaryCondition="false" compartment="cytosol" id="L-histidine" name="L-histidine"/> <species boundaryCondition="false" compartment="cytosol" id="L-tyrosine" name="L-tyrosine"/> <species boundaryCondition="false" compartment="cytosol" id="L-methionine" name="L-methionine"/> <species boundaryCondition="false" compartment="cytosol" id="L-phenylalanine" name="L-phenylalanine"/> <species boundaryCondition="false" compartment="cytosol" id="L-serine" name="L-serine"/> <species boundaryCondition="false" compartment="cytosol" id="L-asparagine" name="L-asparagine"/> <species boundaryCondition="false" compartment="cytosol" id="L-tryptophan" name="L-tryptophan"/> <species boundaryCondition="false" compartment="cytosol" id="L-cysteine" name="L-cysteine"/> <species boundaryCondition="false" compartment="cytosol" id="L-isoleucine" name="L-isoleucine"/> <species boundaryCondition="false" compartment="cytosol" id="L-threonine" name="L-threonine"/> <species 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id="carbon_monoxide" name="carbon_monoxide"/> <species boundaryCondition="false" compartment="extracellular" id="chloride_ex" name="chloride_ex"/> <species boundaryCondition="false" compartment="cytosol" id="chloride" name="chloride"/> <species boundaryCondition="false" compartment="extracellular" id="oxygen_ex" name="oxygen_ex"/> <species boundaryCondition="false" compartment="cytosol" id="oxygen" name="oxygen"/> <species boundaryCondition="false" compartment="extracellular" id="(1,4)-beta-xylobiose_ex" name="(1,4)-beta-xylobiose_ex"/> <species boundaryCondition="false" compartment="cytosol" id="(1,4)-beta-xylobiose" name="(1,4)-beta-xylobiose"/> <species boundaryCondition="false" compartment="extracellular" id="(R)-acetoin_ex" name="(R)-acetoin_ex"/> <species boundaryCondition="false" compartment="cytosol" id="(R)-acetoin" name="(R)-acetoin"/> <species boundaryCondition="false" compartment="extracellular" id="(S)-lactic_acid_ex" name="(S)-lactic_acid_ex"/> <species 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name="N-acetyl-L-glutamate"/> <species boundaryCondition="false" compartment="extracellular" id="acetone_ex" name="acetone_ex"/> <species boundaryCondition="false" compartment="cytosol" id="acetone" name="acetone"/> <species boundaryCondition="false" compartment="extracellular" id="alpha-D-xylopyranose_ex" name="alpha-D-xylopyranose_ex"/> <species boundaryCondition="false" compartment="cytosol" id="alpha-D-xylopyranose" name="alpha-D-xylopyranose"/> <species boundaryCondition="false" compartment="extracellular" id="beta-D-fructofuranose_ex" name="beta-D-fructofuranose_ex"/> <species boundaryCondition="false" compartment="cytosol" id="beta-D-fructofuranose" name="beta-D-fructofuranose"/> <species boundaryCondition="false" compartment="extracellular" id="beta-D-galactose_ex" name="beta-D-galactose_ex"/> <species boundaryCondition="false" compartment="cytosol" id="beta-D-galactose" name="beta-D-galactose"/> <species boundaryCondition="false" compartment="extracellular" 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compartment="cytosol" id="lactulose" name="lactulose"/> <species boundaryCondition="false" compartment="extracellular" id="maltotriose_ex" name="maltotriose_ex"/> <species boundaryCondition="false" compartment="cytosol" id="maltotriose" name="maltotriose"/> <species boundaryCondition="false" compartment="extracellular" id="melibiose_ex" name="melibiose_ex"/> <species boundaryCondition="false" compartment="cytosol" id="melibiose" name="melibiose"/> <species boundaryCondition="false" compartment="extracellular" id="n-propanol_ex" name="n-propanol_ex"/> <species boundaryCondition="false" compartment="cytosol" id="n-propanol" name="n-propanol"/> <species boundaryCondition="false" compartment="extracellular" id="phenol_ex" name="phenol_ex"/> <species boundaryCondition="false" compartment="cytosol" id="phenol" name="phenol"/> <species boundaryCondition="false" compartment="extracellular" id="raffinose_ex" name="raffinose_ex"/> <species boundaryCondition="false" compartment="cytosol" id="raffinose" name="raffinose"/> <species boundaryCondition="false" compartment="extracellular" id="succinic_acid_ex" name="succinic_acid_ex"/> <species boundaryCondition="false" compartment="cytosol" id="succinic_acid" name="succinic_acid"/> <species boundaryCondition="false" compartment="extracellular" id="sucrose_ex" name="sucrose_ex"/> <species boundaryCondition="false" compartment="cytosol" id="sucrose" name="sucrose"/> <species boundaryCondition="false" compartment="extracellular" id="trehalose_ex" name="trehalose_ex"/> <species boundaryCondition="false" compartment="extracellular" id="ammonium_ex" name="ammonium_ex"/> <species boundaryCondition="false" compartment="cytosol" id="ammonium" name="ammonium"/> <species boundaryCondition="false" compartment="extracellular" id="hydrogen_sulfide_ex" name="hydrogen_sulfide_ex"/> <species boundaryCondition="false" compartment="cytosol" id="hydrogen_sulfide" name="hydrogen_sulfide"/> <species boundaryCondition="false" compartment="extracellular" id="sulfate_ex" name="sulfate_ex"/> <species boundaryCondition="false" compartment="cytosol" id="sulfate" name="sulfate"/> <species boundaryCondition="false" compartment="extracellular" id="dihydrogen_phosphate_ex" name="dihydrogen_phosphate_ex"/> <species boundaryCondition="false" compartment="cytosol" id="dihydrogen_phosphate" name="dihydrogen_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="Na+" name="Na+"/> <species boundaryCondition="false" compartment="cytosol" id="(S)-lactic_acid" name="(S)-lactic_acid"/> <species boundaryCondition="false" compartment="cytosol" id="Ca2+" name="Ca2+"/> <species boundaryCondition="false" compartment="cytosol" id="2-dehydro-3-deoxy-L-fuconate" name="2-dehydro-3-deoxy-L-fuconate"/> <species boundaryCondition="false" compartment="cytosol" id="pyruvate" name="pyruvate"/> <species boundaryCondition="false" compartment="cytosol" id="L-lactaldehyde" name="L-lactaldehyde"/> <species boundaryCondition="false" compartment="cytosol" id="(S)-lactate" name="(S)-lactate"/> <species boundaryCondition="false" compartment="cytosol" id="L-1,2-propanediol" name="L-1,2-propanediol"/> <species boundaryCondition="false" compartment="cytosol" id="propanal" name="propanal"/> <species boundaryCondition="false" compartment="cytosol" id="2,4-diketo-3-deoxy-L-fuconate" name="2,4-diketo-3-deoxy-L-fuconate"/> <species boundaryCondition="false" compartment="cytosol" id="2,4-diketo-3,5-deoxy-L-fuconate" name="2,4-diketo-3,5-deoxy-L-fuconate"/> <species boundaryCondition="false" compartment="cytosol" id="hexulose_6-phosphate" name="hexulose_6-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="D-fructose-6-phosphate" name="D-fructose-6-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="L-fuculose" name="L-fuculose"/> <species boundaryCondition="false" compartment="cytosol" id="L-fuculose-1-phosphate" name="L-fuculose-1-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="dihydroxyacetone_phosphate" name="dihydroxyacetone_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="fructose-1,6-bisphosphate" name="fructose-1,6-bisphosphate"/> <species boundaryCondition="false" compartment="cytosol" id="D-sedoheptulose-1,7-bisphosphate" name="D-sedoheptulose-1,7-bisphosphate"/> <species boundaryCondition="false" compartment="cytosol" id="D-glyceraldehyde-3-phosphate" name="D-glyceraldehyde-3-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="D-erythrose-4-phosphate" name="D-erythrose-4-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="dihydroxyacetone" name="dihydroxyacetone"/> <species boundaryCondition="false" compartment="cytosol" id="D-ribulose-5-phosphate" name="D-ribulose-5-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="D-xylulose" name="D-xylulose"/> <species boundaryCondition="false" compartment="cytosol" 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boundaryCondition="false" compartment="cytosol" id="(S)-2-acetolactate" name="(S)-2-acetolactate"/> <species boundaryCondition="false" compartment="cytosol" id="(R)-2,3-dihydroxy-3-methylbutanoate" name="(R)-2,3-dihydroxy-3-methylbutanoate"/> <species boundaryCondition="false" compartment="cytosol" id="2-oxoisovalerate" name="2-oxoisovalerate"/> <species boundaryCondition="false" compartment="cytosol" id="(2S)-2-isopropylmalate" name="(2S)-2-isopropylmalate"/> <species boundaryCondition="false" compartment="cytosol" id="(2R,3S)-3-isopropylmalate" name="(2R,3S)-3-isopropylmalate"/> <species boundaryCondition="false" compartment="cytosol" id="2-isopropylmaleate" name="2-isopropylmaleate"/> <species boundaryCondition="false" compartment="cytosol" id="4-methyl-2-oxopentanoate" name="4-methyl-2-oxopentanoate"/> <species boundaryCondition="false" compartment="cytosol" id="carbamoyl-phosphate" name="carbamoyl-phosphate"/> <species boundaryCondition="false" compartment="cytosol" 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boundaryCondition="false" compartment="cytosol" id="5-methyl-tetrahydrosulfopterin" name="5-methyl-tetrahydrosulfopterin"/> <species boundaryCondition="false" compartment="cytosol" id="S-adenosyl-L-methionine" name="S-adenosyl-L-methionine"/> <species boundaryCondition="false" compartment="cytosol" id="S-adenosyl-L-homocysteine" name="S-adenosyl-L-homocysteine"/> <species boundaryCondition="false" compartment="cytosol" id="S-methyl-5-thio-alpha-D-ribose_1-phosphate" name="S-methyl-5-thio-alpha-D-ribose_1-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="5-methylthioribulose-1-phosphate" name="5-methylthioribulose-1-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="5-(methylthio)-2,3-dioxopentyl_phosphate" name="5-(methylthio)-2,3-dioxopentyl_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="1,2-dihydroxy-5-(methylthio)pent-1-en-3-one" name="1,2-dihydroxy-5-(methylthio)pent-1-en-3-one"/> <species boundaryCondition="false" compartment="cytosol" id="2-oxo-4-methylthiobutanoate" name="2-oxo-4-methylthiobutanoate"/> <species boundaryCondition="false" compartment="cytosol" id="formate" name="formate"/> <species boundaryCondition="false" compartment="cytosol" id="homogentisate" name="homogentisate"/> <species boundaryCondition="false" compartment="cytosol" id="homogentisic_aldehyde" name="homogentisic_aldehyde"/> <species boundaryCondition="false" compartment="cytosol" id="benzothiphen-4,7-quinone" name="benzothiphen-4,7-quinone"/> <species boundaryCondition="false" compartment="cytosol" id="benzothiophen-4,7-diol" name="benzothiophen-4,7-diol"/> <species boundaryCondition="false" compartment="cytosol" id="(2E,6E)-farnesyl_diphosphate" name="(2E,6E)-farnesyl_diphosphate"/> <species boundaryCondition="false" compartment="cytosol" id="isopentenyl_diphosphate" name="isopentenyl_diphosphate"/> <species boundaryCondition="false" compartment="cytosol" 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name="5'-deoxyadenosine"/> <species boundaryCondition="false" compartment="cytosol" id="4-methylphenol" name="4-methylphenol"/> <species boundaryCondition="false" compartment="cytosol" id="2-iminoacetate" name="2-iminoacetate"/> <species boundaryCondition="false" compartment="cytosol" id="|ThiI_sulfur-carrier_protein|" name="|ThiI_sulfur-carrier_protein|"/> <species boundaryCondition="false" compartment="cytosol" id="|Persulfurated-L-cysteine-desulfurases|" name="|Persulfurated-L-cysteine-desulfurases|"/> <species boundaryCondition="false" compartment="cytosol" id="|Persulfurated-ThiI_sulfur-carrier_protein|" name="|Persulfurated-ThiI_sulfur-carrier_protein|"/> <species boundaryCondition="false" compartment="cytosol" id="|L-Cysteine-Desulfurases|" name="|L-Cysteine-Desulfurases|"/> <species boundaryCondition="false" compartment="cytosol" id="|Thiocarboxyadenylated-ThiS-Proteins|" name="|Thiocarboxyadenylated-ThiS-Proteins|"/> <species boundaryCondition="false" compartment="cytosol" id="1-deoxy-D-xylulose_5-phosphate" name="1-deoxy-D-xylulose_5-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="2-[(2R,5Z)-(2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl_phosphate" name="2-[(2R,5Z)-(2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="4-amino-2-methyl-5-diphosphomethylpyrimidine" name="4-amino-2-methyl-5-diphosphomethylpyrimidine"/> <species boundaryCondition="false" compartment="cytosol" id="thiamin_phosphate" name="thiamin_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="5-amino-1-(5-phospho-D-ribosyl)imidazole" name="5-amino-1-(5-phospho-D-ribosyl)imidazole"/> <species boundaryCondition="false" compartment="cytosol" id="4-amino-2-methyl-5-phosphomethylpyrimidine" name="4-amino-2-methyl-5-phosphomethylpyrimidine"/> <species boundaryCondition="false" compartment="cytosol" id="thiamin" name="thiamin"/> <species boundaryCondition="false" 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boundaryCondition="false" compartment="cytosol" id="deoxyuridine" name="deoxyuridine"/> <species boundaryCondition="false" compartment="cytosol" id="uracil" name="uracil"/> <species boundaryCondition="false" compartment="cytosol" id="xanthosine" name="xanthosine"/> <species boundaryCondition="false" compartment="cytosol" id="alpha-D-ribofuranose" name="alpha-D-ribofuranose"/> <species boundaryCondition="false" compartment="cytosol" id="hypoxanthine" name="hypoxanthine"/> <species boundaryCondition="false" compartment="cytosol" id="uridine" name="uridine"/> <species boundaryCondition="false" compartment="cytosol" id="cytidine" name="cytidine"/> <species boundaryCondition="false" compartment="cytosol" id="thymidine" name="thymidine"/> <species boundaryCondition="false" compartment="cytosol" id="5,6-dihydrothymine" name="5,6-dihydrothymine"/> <species boundaryCondition="false" compartment="cytosol" id="thymine" name="thymine"/> <species boundaryCondition="false" compartment="cytosol" 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boundaryCondition="false" compartment="cytosol" id="glycolate" name="glycolate"/> <species boundaryCondition="false" compartment="cytosol" id="D-threo-aldono-1,5-lactone" name="D-threo-aldono-1,5-lactone"/> <species boundaryCondition="false" compartment="cytosol" id="L-fuconate" name="L-fuconate"/> <species boundaryCondition="false" compartment="cytosol" id="beta-L-galactose" name="beta-L-galactose"/> <species boundaryCondition="false" compartment="cytosol" id="L-galactono-1,5-lactone" name="L-galactono-1,5-lactone"/> <species boundaryCondition="false" compartment="cytosol" id="D-ribofuranose" name="D-ribofuranose"/> <species boundaryCondition="false" compartment="cytosol" id="D-Ribonate" name="D-Ribonate"/> <species boundaryCondition="false" compartment="cytosol" id="D-sorbitol" name="D-sorbitol"/> <species boundaryCondition="false" compartment="cytosol" id="acrylamide" name="acrylamide"/> <species boundaryCondition="false" compartment="cytosol" id="acrylate" name="acrylate"/> 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id="4-aminobutyrate" name="4-aminobutyrate"/> <species boundaryCondition="false" compartment="cytosol" id="2-hydroxyglutarate" name="2-hydroxyglutarate"/> <species boundaryCondition="false" compartment="cytosol" id="(R)-2-hydroxyglutarate" name="(R)-2-hydroxyglutarate"/> <species boundaryCondition="false" compartment="cytosol" id="(R)-2-hydroxyglutaryl-CoA" name="(R)-2-hydroxyglutaryl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="(E)-glutaconyl-CoA" name="(E)-glutaconyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="protocatechuate" name="protocatechuate"/> <species boundaryCondition="false" compartment="cytosol" id="hydroxypyruvate" name="hydroxypyruvate"/> <species boundaryCondition="false" compartment="cytosol" id="2-oxoadipate" name="2-oxoadipate"/> <species boundaryCondition="false" compartment="cytosol" id="glutaryl-CoA" name="glutaryl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="isobutanoyl-CoA" name="isobutanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="methylacrylyl-CoA" name="methylacrylyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="(S)-3-hydroxy-isobutanoyl-CoA" name="(S)-3-hydroxy-isobutanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="(S)-3-hydroxy-isobutanoate" name="(S)-3-hydroxy-isobutanoate"/> <species boundaryCondition="false" compartment="cytosol" id="(S)-methylmalonate-semialdehyde" name="(S)-methylmalonate-semialdehyde"/> <species boundaryCondition="false" compartment="cytosol" id="isovaleryl-CoA" name="isovaleryl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="3-methylcrotonyl-CoA" name="3-methylcrotonyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="3-methylglutaconyl-CoA" name="3-methylglutaconyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="2-methylbutanoyl-CoA" name="2-methylbutanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="(E)-2-methylcrotonoyl-CoA" name="(E)-2-methylcrotonoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="2-methyl-3-hydroxybutyryl-CoA" name="2-methyl-3-hydroxybutyryl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="2-methylacetoacetyl-CoA" name="2-methylacetoacetyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="OH-" name="OH-"/> <species boundaryCondition="false" compartment="extracellular" id="OH-_ex" name="OH-_ex"/> <species boundaryCondition="false" compartment="cytosol" id="bisulfite" name="bisulfite"/> <species boundaryCondition="false" compartment="extracellular" id="ammonia_ex" name="ammonia_ex"/> <species boundaryCondition="false" compartment="cytosol" id="(R)-NADHX" name="(R)-NADHX"/> <species boundaryCondition="false" compartment="cytosol" id="beta-D-glucose_1-phosphate" name="beta-D-glucose_1-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="L-glutamate_gamma-semialdehyde" name="L-glutamate_gamma-semialdehyde"/> <species boundaryCondition="false" compartment="cytosol" id="carbamate" name="carbamate"/> <species boundaryCondition="false" compartment="cytosol" id="S-hydroxymethylglutathione" name="S-hydroxymethylglutathione"/> <species boundaryCondition="false" compartment="cytosol" id="enolaldehyde" name="enolaldehyde"/> <species boundaryCondition="false" compartment="cytosol" id="L-ascorbate" name="L-ascorbate"/> <species boundaryCondition="false" compartment="cytosol" id="L-dehydro-ascorbate" name="L-dehydro-ascorbate"/> <species boundaryCondition="false" compartment="extracellular" id="5-oxoproline_ex" name="5-oxoproline_ex"/> <species boundaryCondition="false" compartment="cytosol" id="dehydroascorbate_(bicyclic_form)" name="dehydroascorbate_(bicyclic_form)"/> <species boundaryCondition="false" compartment="cytosol" id="2,3-dioxo-L-gulonate" name="2,3-dioxo-L-gulonate"/> <species boundaryCondition="false" compartment="cytosol" id="selenite" name="selenite"/> <species boundaryCondition="false" compartment="cytosol" id="glutathione_disulfide" name="glutathione_disulfide"/> <species boundaryCondition="false" compartment="cytosol" id="selenodiglutathione" name="selenodiglutathione"/> <species boundaryCondition="false" compartment="cytosol" id="cyclic-2,3-O-oxalyl-L-threonate" name="cyclic-2,3-O-oxalyl-L-threonate"/> <species boundaryCondition="false" compartment="cytosol" id="2-carboxy-L-xylonolactone" name="2-carboxy-L-xylonolactone"/> <species boundaryCondition="false" compartment="cytosol" id="2-carboxy-L-threo-pentonate" name="2-carboxy-L-threo-pentonate"/> <species boundaryCondition="false" compartment="cytosol" id="cyclic-_3,4-O-oxalyl-L-threonate" name="cyclic-_3,4-O-oxalyl-L-threonate"/> <species boundaryCondition="false" compartment="cytosol" id="(R)-methylmalonate-semialdehyde" name="(R)-methylmalonate-semialdehyde"/> <species boundaryCondition="false" compartment="cytosol" id="aldehydo-L-fucose" name="aldehydo-L-fucose"/> <species boundaryCondition="false" compartment="cytosol" id="L-fucose" name="L-fucose"/> <species boundaryCondition="false" compartment="cytosol" id="|TYR-tRNAs|" name="|TYR-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-TYR-tRNAs|" name="|Charged-TYR-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|TRP-tRNAs|" name="|TRP-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-TRP-tRNAs|" name="|Charged-TRP-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|THR-tRNAs|" name="|THR-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-THR-tRNAs|" name="|Charged-THR-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|LEU-tRNAs|" name="|LEU-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-LEU-tRNAs|" name="|Charged-LEU-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|ILE-tRNAs|" name="|ILE-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-ILE-tRNAs|" name="|Charged-ILE-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|LYS-tRNAs|" name="|LYS-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-LYS-tRNAs|" name="|Charged-LYS-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|ALA-tRNAs|" name="|ALA-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-ALA-tRNAs|" name="|Charged-ALA-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|VAL-tRNAs|" name="|VAL-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-VAL-tRNAs|" name="|Charged-VAL-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|MET-tRNAs|" name="|MET-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-MET-tRNAs|" name="|Charged-MET-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|SER-tRNAs|" name="|SER-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-SER-tRNAs|" name="|Charged-SER-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|ASP-tRNAs|" name="|ASP-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-ASP-tRNAs|" name="|Charged-ASP-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|GLY-tRNAs|" name="|GLY-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-GLY-tRNAs|" name="|Charged-GLY-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|PRO-tRNAs|" name="|PRO-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-PRO-tRNAs|" name="|Charged-PRO-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|CYS-tRNAs|" name="|CYS-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-CYS-tRNAs|" name="|Charged-CYS-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|GLN-tRNAs|" name="|GLN-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-GLN-tRNAs|" name="|Charged-GLN-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|ARG-tRNAs|" name="|ARG-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-ARG-tRNAs|" name="|Charged-ARG-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|PHE-tRNAs|" name="|PHE-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-PHE-tRNAs|" name="|Charged-PHE-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|HIS-tRNAs|" name="|HIS-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="|Charged-HIS-tRNAs|" name="|Charged-HIS-tRNAs|"/> <species boundaryCondition="false" compartment="cytosol" id="Hg0" name="Hg0"/> <species boundaryCondition="false" compartment="cytosol" id="Hg2+" name="Hg2+"/> <species boundaryCondition="false" compartment="cytosol" id="acetylphosphate" name="acetylphosphate"/> <species boundaryCondition="false" compartment="cytosol" id="UDP-D-glucuronate" name="UDP-D-glucuronate"/> <species boundaryCondition="false" compartment="cytosol" id="acetoacetate" name="acetoacetate"/> <species boundaryCondition="false" compartment="cytosol" id="coenzyme_M" name="coenzyme_M"/> <species boundaryCondition="false" compartment="cytosol" id="2-oxopropyl-CoM" name="2-oxopropyl-CoM"/> <species boundaryCondition="false" compartment="cytosol" id="beta-ketovaleryl-CoA" name="beta-ketovaleryl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="|Immunoglobulin-G-Glycopeptides|" name="|Immunoglobulin-G-Glycopeptides|"/> <species boundaryCondition="false" compartment="cytosol" id="|Immunoglobulin-G-Glycopeptides-fragments|" name="|Immunoglobulin-G-Glycopeptides-fragments|"/> <species boundaryCondition="false" compartment="cytosol" id="carboxyphosphonoenolpyruvate" name="carboxyphosphonoenolpyruvate"/> <species boundaryCondition="false" compartment="cytosol" id="carboxyphosphinopyruvate" name="carboxyphosphinopyruvate"/> <species boundaryCondition="false" compartment="cytosol" id="dehydrospermidine" name="dehydrospermidine"/> <species boundaryCondition="false" compartment="cytosol" id="|Histones|" name="|Histones|"/> <species boundaryCondition="false" compartment="cytosol" id="|Acetylated-histones|" name="|Acetylated-histones|"/> <species boundaryCondition="false" compartment="cytosol" id="OPC4-3-ketoacyl-CoA" name="OPC4-3-ketoacyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="jasmonoyl-CoA" name="jasmonoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="linolenoyl-CoA" name="linolenoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="alpha-linolenate" name="alpha-linolenate"/> <species boundaryCondition="false" compartment="cytosol" id="caprate" name="caprate"/> <species boundaryCondition="false" compartment="cytosol" id="decanoyl-CoA" name="decanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="palmitate" name="palmitate"/> <species boundaryCondition="false" compartment="cytosol" id="palmitoyl-CoA" name="palmitoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="oleate" name="oleate"/> <species boundaryCondition="false" compartment="cytosol" id="oleoyl-CoA" name="oleoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="linoleate" name="linoleate"/> <species boundaryCondition="false" compartment="cytosol" id="linoleoyl-CoA" name="linoleoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="phytenate" name="phytenate"/> <species boundaryCondition="false" compartment="cytosol" id="phytenoyl-CoA" name="phytenoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="pristanate" name="pristanate"/> <species boundaryCondition="false" compartment="cytosol" id="pristanoyl-CoA" name="pristanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="octanoate" name="octanoate"/> <species boundaryCondition="false" compartment="cytosol" id="octanoyl-CoA" name="octanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="2-carboxy-5-oxo-2,5-dihydrofuran-2-acetate" name="2-carboxy-5-oxo-2,5-dihydrofuran-2-acetate"/> <species boundaryCondition="false" compartment="cytosol" id="3-oxoadipate_enol_lactone" name="3-oxoadipate_enol_lactone"/> <species boundaryCondition="false" compartment="cytosol" id="N-carbamoyl-L-methionine" name="N-carbamoyl-L-methionine"/> <species boundaryCondition="false" compartment="cytosol" id="N-carbamoyl-L-alanine" name="N-carbamoyl-L-alanine"/> <species boundaryCondition="false" compartment="cytosol" id="N-Acetyl-L-aspartate" name="N-Acetyl-L-aspartate"/> <species boundaryCondition="false" compartment="cytosol" id="all-trans-phytoene" name="all-trans-phytoene"/> <species boundaryCondition="false" compartment="cytosol" id="chloroacetate" name="chloroacetate"/> <species boundaryCondition="false" compartment="cytosol" id="HCl" name="HCl"/> <species boundaryCondition="false" compartment="cytosol" id="bromoacetate" name="bromoacetate"/> <species boundaryCondition="false" compartment="cytosol" id="HBr" name="HBr"/> <species boundaryCondition="false" compartment="cytosol" id="L-methionine-(S)-S-oxide" name="L-methionine-(S)-S-oxide"/> <species boundaryCondition="false" compartment="cytosol" id="alpha-L-fucoside" name="alpha-L-fucoside"/> <species boundaryCondition="false" compartment="cytosol" id="4-nitrophenyl_phosphate" name="4-nitrophenyl_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="2-phosphoglycolate" name="2-phosphoglycolate"/> <species boundaryCondition="false" compartment="cytosol" id="cis-dienelactone" name="cis-dienelactone"/> <species boundaryCondition="false" compartment="cytosol" id="2-maleylacetate" name="2-maleylacetate"/> <species boundaryCondition="false" compartment="cytosol" id="4-nitrophenyl_butyrate" name="4-nitrophenyl_butyrate"/> <species boundaryCondition="false" compartment="cytosol" id="n-butanoate" name="n-butanoate"/> <species boundaryCondition="false" compartment="cytosol" id="p-nitrophenyl_acetate" name="p-nitrophenyl_acetate"/> <species boundaryCondition="false" compartment="cytosol" id="tributyrin" name="tributyrin"/> <species boundaryCondition="false" compartment="cytosol" id="dibutyrin" name="dibutyrin"/> <species boundaryCondition="false" compartment="cytosol" id="ethylacetate" name="ethylacetate"/> <species boundaryCondition="false" compartment="cytosol" id="hydrogen_cyanide" name="hydrogen_cyanide"/> <species boundaryCondition="false" compartment="cytosol" id="thiosulfate" name="thiosulfate"/> <species boundaryCondition="false" compartment="cytosol" id="thiocyanate" name="thiocyanate"/> <species boundaryCondition="false" compartment="cytosol" id="phosphinopyruvate" name="phosphinopyruvate"/> <species boundaryCondition="false" compartment="cytosol" id="dolichyl_phosphate" name="dolichyl_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="N-acetyl-D-glucosaminyl-diphosphodolichol" name="N-acetyl-D-glucosaminyl-diphosphodolichol"/> <species boundaryCondition="false" compartment="cytosol" id="hygromycin-B" name="hygromycin-B"/> <species boundaryCondition="false" compartment="cytosol" id="7''-O-phosphohygromycin_B" name="7''-O-phosphohygromycin_B"/> <species boundaryCondition="false" compartment="cytosol" id="dolichyl_beta-D-mannosyl_phosphate" name="dolichyl_beta-D-mannosyl_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="N-(4-nitrophenyl)-L-alpha-glutamine" name="N-(4-nitrophenyl)-L-alpha-glutamine"/> <species boundaryCondition="false" compartment="cytosol" id="4-nitroaniline" name="4-nitroaniline"/> <species boundaryCondition="false" compartment="cytosol" id="5-L-glutamyl-glutathione" name="5-L-glutamyl-glutathione"/> <species boundaryCondition="false" compartment="cytosol" id="cysteinylglycine" name="cysteinylglycine"/> <species boundaryCondition="false" compartment="cytosol" id="3-oxodecanoyl-CoA" name="3-oxodecanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="lauroyl-CoA" name="lauroyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="3-oxo-myristoyl-CoA" name="3-oxo-myristoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="coenzyme-A-group" name="coenzyme-A-group"/> <species boundaryCondition="false" compartment="cytosol" id="3-oxododecanoyl-CoA" name="3-oxododecanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="hexanoyl-CoA" name="hexanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="3-oxooctanoyl-CoA" name="3-oxooctanoyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="aminoacetone" name="aminoacetone"/> <species boundaryCondition="false" compartment="cytosol" id="tyramine" name="tyramine"/> <species boundaryCondition="false" compartment="cytosol" id="4-hydroxyaceto-phenone" name="4-hydroxyaceto-phenone"/> <species boundaryCondition="false" compartment="cytosol" id="cadaverine" name="cadaverine"/> <species boundaryCondition="false" compartment="cytosol" id="5-aminopentanal" name="5-aminopentanal"/> <species boundaryCondition="false" compartment="cytosol" id="benzylamine" name="benzylamine"/> <species boundaryCondition="false" compartment="cytosol" id="benzaldehyde" name="benzaldehyde"/> <species boundaryCondition="false" compartment="cytosol" id="2-phenylethylamine" name="2-phenylethylamine"/> <species boundaryCondition="false" compartment="cytosol" id="phenylacetaldehyde" name="phenylacetaldehyde"/> <species boundaryCondition="false" compartment="cytosol" id="3-oxoadipate" name="3-oxoadipate"/> <species boundaryCondition="false" compartment="cytosol" id="indole-3-pyruvate" name="indole-3-pyruvate"/> <species boundaryCondition="false" compartment="cytosol" id="S-2-(indol-3_yl)acetyl-CoA" name="S-2-(indol-3_yl)acetyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="phenylacetate" name="phenylacetate"/> <species boundaryCondition="false" compartment="cytosol" id="maleate" name="maleate"/> <species boundaryCondition="false" compartment="cytosol" id="4alpha-hydroxy-tetrahydrobiopterin" name="4alpha-hydroxy-tetrahydrobiopterin"/> <species boundaryCondition="false" compartment="cytosol" id="L-erythro-7,8-dihydrobiopterin" name="L-erythro-7,8-dihydrobiopterin"/> <species boundaryCondition="false" compartment="cytosol" id="4a-hydroxytetrahydrobiopterin" name="4a-hydroxytetrahydrobiopterin"/> <species boundaryCondition="false" compartment="cytosol" id="L-carnitine" name="L-carnitine"/> <species boundaryCondition="false" compartment="cytosol" id="crotono-betaine" name="crotono-betaine"/> <species boundaryCondition="false" compartment="cytosol" id="D-galactarate" name="D-galactarate"/> <species boundaryCondition="false" compartment="cytosol" id="5-dehydro-4-deoxy-D-glucarate" name="5-dehydro-4-deoxy-D-glucarate"/> <species boundaryCondition="false" compartment="cytosol" id="N-carbamoyl-L-cysteine" name="N-carbamoyl-L-cysteine"/> <species boundaryCondition="false" compartment="cytosol" id="N-acetyl-D-glucosamine-6-phosphate" name="N-acetyl-D-glucosamine-6-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="N-acetyl-D-galactosamine-6-phosphate" name="N-acetyl-D-galactosamine-6-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="D-galactosamine-6-phosphate" name="D-galactosamine-6-phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="N-alpha-acetyl-L-methionine" name="N-alpha-acetyl-L-methionine"/> <species boundaryCondition="false" compartment="cytosol" id="5-dehydro-D-gluconate" name="5-dehydro-D-gluconate"/> <species boundaryCondition="false" compartment="cytosol" id="selenate" name="selenate"/> <species boundaryCondition="false" compartment="cytosol" id="H2" name="H2"/> <species boundaryCondition="false" compartment="cytosol" id="precorrin-6B" name="precorrin-6B"/> <species boundaryCondition="false" compartment="cytosol" id="precorrin-8x" name="precorrin-8x"/> <species boundaryCondition="false" compartment="cytosol" id="dolichyl_beta-D-glucosyl_phosphate" name="dolichyl_beta-D-glucosyl_phosphate"/> <species boundaryCondition="false" compartment="cytosol" id="formyl-CoA" name="formyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="oxalyl-CoA" name="oxalyl-CoA"/> <species boundaryCondition="false" compartment="cytosol" id="isochorismate" name="isochorismate"/> <species boundaryCondition="false" compartment="cytosol" id="2,3-dihydroxy-2,3-dihydrobenzoate" name="2,3-dihydroxy-2,3-dihydrobenzoate"/> <species boundaryCondition="false" compartment="cytosol" id="hydroxymethylpyrimidine" name="hydroxymethylpyrimidine"/> <species boundaryCondition="false" compartment="cytosol" id="4-methyl-5-(beta-hydroxyethyl)thiazole" name="4-methyl-5-(beta-hydroxyethyl)thiazole"/> <species boundaryCondition="false" compartment="cytosol" id="iodoacetate" name="iodoacetate"/> <species boundaryCondition="false" compartment="cytosol" id="iodide" name="iodide"/> <species boundaryCondition="false" compartment="cytosol" id="retinyl-beta-glucuronide" name="retinyl-beta-glucuronide"/> <species boundaryCondition="false" compartment="cytosol" id="all-trans-retinol" name="all-trans-retinol"/> <species boundaryCondition="false" compartment="cytosol" id="D-glucuronide" name="D-glucuronide"/> <species boundaryCondition="false" compartment="cytosol" id="D-galactono-1,4-lactone" name="D-galactono-1,4-lactone"/> <species boundaryCondition="false" compartment="cytosol" id="L-iditol" name="L-iditol"/> <species boundaryCondition="false" compartment="cytosol" id="L-sorbose" name="L-sorbose"/> <species boundaryCondition="false" compartment="cytosol" id="D-arabitol" name="D-arabitol"/> <species boundaryCondition="false" compartment="cytosol" id="Benzonitrile" name="Benzonitrile"/> <species boundaryCondition="false" compartment="cytosol" id="benzoate" name="benzoate"/> <species boundaryCondition="false" compartment="cytosol" id="phenylacetonitrile" name="phenylacetonitrile"/> <species boundaryCondition="false" compartment="cytosol" id="ribose-1,5-bisphosphate" name="ribose-1,5-bisphosphate"/> <species boundaryCondition="false" compartment="cytosol" id="D-ribulose-1,5-bisphosphate" name="D-ribulose-1,5-bisphosphate"/> <species boundaryCondition="false" compartment="cytosol" id="methylmalonate_semialdehyde" name="methylmalonate_semialdehyde"/> <species boundaryCondition="false" compartment="cytosol" id="L-homoserine_lactone" name="L-homoserine_lactone"/> <species boundaryCondition="false" compartment="extracellular" id="phosphate_ex" name="phosphate_ex"/> </listOfSpecies> <listOfReactions> <reaction id="Biomass" name="Biomass" reversible="false"> <listOfReactants> <speciesReference species="dGMP" stoichiometry="0.00587329"/> <speciesReference species="dAMP" stoichiometry="0.0105384"/> <speciesReference species="dTMP" stoichiometry="0.0105384"/> <speciesReference species="dCMP" stoichiometry="0.00587329"/> <speciesReference species="AMP" stoichiometry="0.0509702"/> <speciesReference species="GMP" stoichiometry="0.0286278"/> <speciesReference species="UMP" stoichiometry="0.0515166"/> <speciesReference species="CMP" stoichiometry="0.0284903"/> <speciesReference species="L-proline" stoichiometry="0.216324"/> <speciesReference species="L-aspartate" stoichiometry="0.266288"/> <speciesReference species="L-lysine" stoichiometry="0.436349"/> <speciesReference species="L-glutamate" stoichiometry="0.386098"/> <speciesReference species="glycine" stoichiometry="0.365316"/> <speciesReference species="L-leucine" stoichiometry="0.587444"/> <speciesReference species="L-valine" stoichiometry="0.42246"/> <speciesReference species="L-glutamine" stoichiometry="0.119235"/> <speciesReference species="L-histidine" stoichiometry="0.0733894"/> <speciesReference species="L-tyrosine" stoichiometry="0.273427"/> <speciesReference species="L-methionine" stoichiometry="0.124839"/> <speciesReference species="L-phenylalanine" stoichiometry="0.251495"/> <speciesReference species="L-serine" stoichiometry="0.380966"/> <speciesReference species="L-asparagine" stoichiometry="0.282307"/> <speciesReference species="L-tryptophan" stoichiometry="0.0595077"/> <speciesReference species="L-cysteine" stoichiometry="0.0350743"/> <speciesReference species="L-isoleucine" stoichiometry="0.538865"/> <speciesReference species="L-threonine" stoichiometry="0.268535"/> <speciesReference species="L-arginine" stoichiometry="0.265678"/> <speciesReference species="L-alanine" stoichiometry="0.318868"/> <speciesReference species="NAD+" stoichiometry="0.00324411"/> <speciesReference species="UDP-alpha-N-acetyl-D-glucosamine" stoichiometry="0.000149155"/> <speciesReference species="NADH" stoichiometry="0.000149155"/> <speciesReference species="L-homocysteine" stoichiometry="0.00158663"/> <speciesReference species="thiamin_diphosphate" stoichiometry="0.000149155"/> <speciesReference species="phosphoenolpyruvate" stoichiometry="0.000771875"/> <speciesReference species="pyridoxal_5'-phosphate" stoichiometry="0.000149155"/> <speciesReference species="propanoyl-CoA" stoichiometry="2.27274e-05"/> <speciesReference species="shikimate" stoichiometry="6.00347e-05"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="0.0348089"/> <speciesReference species="sn-glycerol-3-phosphate" stoichiometry="0.000210681"/> <speciesReference species="NADPH" stoichiometry="0.000596618"/> <speciesReference species="coenzyme_B12" stoichiometry="0.00693569"/> <speciesReference species="NADP+" stoichiometry="0.000149155"/> <speciesReference species="trehalose" stoichiometry="0.00119176"/> <speciesReference species="coenzyme_A" stoichiometry="0.000149155"/> <speciesReference species="FAD" stoichiometry="1.86443e-05"/> <speciesReference species="saturated_inositolglycolipidcaldarchaeol" stoichiometry="0.00294824"/> <speciesReference species="saturated_calditolcaldarchaeol" stoichiometry="0.00515942"/> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="0.00982746"/> <speciesReference species="representative_quinone" stoichiometry="0.00147412"/> <speciesReference species="saturated_glycolipidcaldarchaeol" stoichiometry="0.00221118"/> <speciesReference species="saturated_inositolcaldarchaeol" stoichiometry="0.00294824"/> <speciesReference species="saturated_inositolcalditolcaldarchaeol" stoichiometry="0.0206377"/> <speciesReference species="saturated_sulfoglycolipidcaldarchaeol" stoichiometry="0.00393099"/> <speciesReference species="glycogen" stoichiometry="0.542048"/> <speciesReference species="putrescine" stoichiometry="0.000686854"/> <speciesReference species="norspermine" stoichiometry="0.00309084"/> <speciesReference species="norspermidine" stoichiometry="0.00274741"/> <speciesReference species="spermidine" stoichiometry="0.0116765"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="5.67246"/> <speciesReference species="Biomass_Sulfolobus" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="Biomass-fucose" name="Biomass-fucose" reversible="false"> <listOfReactants> <speciesReference species="dGMP" stoichiometry="0.00612358"/> <speciesReference species="dAMP" stoichiometry="0.0109875"/> <speciesReference species="dTMP" stoichiometry="0.0109875"/> <speciesReference species="dCMP" stoichiometry="0.00612358"/> <speciesReference species="AMP" stoichiometry="0.0510275"/> <speciesReference species="GMP" stoichiometry="0.0286599"/> <speciesReference species="UMP" stoichiometry="0.0515744"/> <speciesReference species="CMP" stoichiometry="0.0285223"/> <speciesReference species="L-proline" stoichiometry="0.219926"/> <speciesReference species="L-aspartate" stoichiometry="0.270721"/> <speciesReference species="L-lysine" stoichiometry="0.443613"/> <speciesReference species="L-glutamate" stoichiometry="0.392525"/> <speciesReference species="glycine" stoichiometry="0.371398"/> <speciesReference species="L-leucine" stoichiometry="0.597224"/> <speciesReference species="L-valine" stoichiometry="0.429493"/> <speciesReference species="L-glutamine" stoichiometry="0.12122"/> <speciesReference species="L-histidine" stoichiometry="0.0746112"/> <speciesReference species="L-tyrosine" stoichiometry="0.277979"/> <speciesReference species="L-methionine" stoichiometry="0.126918"/> <speciesReference species="L-phenylalanine" stoichiometry="0.255681"/> <speciesReference species="L-serine" stoichiometry="0.387308"/> <speciesReference species="L-asparagine" stoichiometry="0.287007"/> <speciesReference species="L-tryptophan" stoichiometry="0.0604984"/> <speciesReference species="L-cysteine" stoichiometry="0.0356582"/> <speciesReference species="L-isoleucine" stoichiometry="0.547836"/> <speciesReference species="L-threonine" stoichiometry="0.273005"/> <speciesReference species="L-arginine" stoichiometry="0.270101"/> <speciesReference species="L-alanine" stoichiometry="0.324177"/> <speciesReference species="NAD+" stoichiometry="0.00311994"/> <speciesReference species="UDP-alpha-N-acetyl-D-glucosamine" stoichiometry="0.000143445"/> <speciesReference species="NADH" stoichiometry="0.000143445"/> <speciesReference species="L-homocysteine" stoichiometry="0.0015259"/> <speciesReference species="thiamin_diphosphate" stoichiometry="0.000143445"/> <speciesReference species="phosphoenolpyruvate" stoichiometry="0.000742329"/> <speciesReference species="pyridoxal_5'-phosphate" stoichiometry="0.000143445"/> <speciesReference species="propanoyl-CoA" stoichiometry="2.18575e-05"/> <speciesReference species="shikimate" stoichiometry="5.77367e-05"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="0.0334765"/> <speciesReference species="sn-glycerol-3-phosphate" stoichiometry="0.000202616"/> <speciesReference species="NADPH" stoichiometry="0.000573781"/> <speciesReference species="coenzyme_B12" stoichiometry="0.00667021"/> <speciesReference species="NADP+" stoichiometry="0.000143445"/> <speciesReference species="trehalose" stoichiometry="0.00114615"/> <speciesReference species="coenzyme_A" stoichiometry="0.000143445"/> <speciesReference species="FAD" stoichiometry="1.79307e-05"/> <speciesReference species="saturated_inositolglycolipidcaldarchaeol" stoichiometry="0.00283539"/> <speciesReference species="saturated_calditolcaldarchaeol" stoichiometry="0.00496193"/> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="0.00945129"/> <speciesReference species="representative_quinone" stoichiometry="0.00141769"/> <speciesReference species="saturated_glycolipidcaldarchaeol" stoichiometry="0.00212654"/> <speciesReference species="saturated_inositolcaldarchaeol" stoichiometry="0.00283539"/> <speciesReference species="saturated_inositolcalditolcaldarchaeol" stoichiometry="0.0198477"/> <speciesReference species="saturated_sulfoglycolipidcaldarchaeol" stoichiometry="0.00378052"/> <speciesReference species="glycogen" stoichiometry="0.5213"/> <speciesReference species="putrescine" stoichiometry="0.000660562"/> <speciesReference species="norspermine" stoichiometry="0.00297253"/> <speciesReference species="norspermidine" stoichiometry="0.00264225"/> <speciesReference species="spermidine" stoichiometry="0.0112296"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="5.7669"/> <speciesReference species="Biomass_Sulfolobus" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="1000.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="1.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0628507245"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="Biomass-phenol" name="Biomass-phenol" reversible="false"> <listOfReactants> <speciesReference species="dGMP" stoichiometry="0.00819257"/> <speciesReference species="dAMP" stoichiometry="0.0146999"/> <speciesReference species="dTMP" stoichiometry="0.0146999"/> <speciesReference species="dCMP" stoichiometry="0.00819257"/> <speciesReference species="AMP" stoichiometry="0.0491186"/> <speciesReference species="GMP" stoichiometry="0.0275878"/> <speciesReference species="UMP" stoichiometry="0.0496451"/> <speciesReference species="CMP" stoichiometry="0.0274553"/> <speciesReference species="L-proline" stoichiometry="0.193523"/> <speciesReference species="L-aspartate" stoichiometry="0.23822"/> <speciesReference species="L-lysine" stoichiometry="0.390356"/> <speciesReference species="L-glutamate" stoichiometry="0.345402"/> <speciesReference species="glycine" stoichiometry="0.326811"/> <speciesReference species="L-leucine" stoichiometry="0.525526"/> <speciesReference species="L-valine" stoichiometry="0.377932"/> <speciesReference species="L-glutamine" stoichiometry="0.106667"/> <speciesReference species="L-histidine" stoichiometry="0.065654"/> <speciesReference species="L-tyrosine" stoichiometry="0.244607"/> <speciesReference species="L-methionine" stoichiometry="0.111681"/> <speciesReference species="L-phenylalanine" stoichiometry="0.224986"/> <speciesReference species="L-serine" stoichiometry="0.340811"/> <speciesReference species="L-asparagine" stoichiometry="0.252551"/> <speciesReference species="L-tryptophan" stoichiometry="0.0532354"/> <speciesReference species="L-cysteine" stoichiometry="0.0313773"/> <speciesReference species="L-isoleucine" stoichiometry="0.482067"/> <speciesReference species="L-threonine" stoichiometry="0.240231"/> <speciesReference species="L-arginine" stoichiometry="0.237675"/> <speciesReference species="L-alanine" stoichiometry="0.285259"/> <speciesReference species="NAD+" stoichiometry="0.0039688"/> <speciesReference species="UDP-alpha-N-acetyl-D-glucosamine" stoichiometry="0.000182473"/> <speciesReference species="NADH" stoichiometry="0.000182473"/> <speciesReference species="L-homocysteine" stoichiometry="0.00194106"/> <speciesReference species="thiamin_diphosphate" stoichiometry="0.000182473"/> <speciesReference species="phosphoenolpyruvate" stoichiometry="0.0009443"/> <speciesReference species="pyridoxal_5'-phosphate" stoichiometry="0.000182473"/> <speciesReference species="propanoyl-CoA" stoichiometry="2.78044e-05"/> <speciesReference species="shikimate" stoichiometry="7.34455e-05"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="0.0425847"/> <speciesReference species="sn-glycerol-3-phosphate" stoichiometry="0.000257744"/> <speciesReference species="NADPH" stoichiometry="0.000729893"/> <speciesReference species="coenzyme_B12" stoichiometry="0.00848501"/> <speciesReference species="NADP+" stoichiometry="0.000182473"/> <speciesReference species="trehalose" stoichiometry="0.00145799"/> <speciesReference species="coenzyme_A" stoichiometry="0.000182473"/> <speciesReference species="FAD" stoichiometry="2.28092e-05"/> <speciesReference species="saturated_inositolglycolipidcaldarchaeol" stoichiometry="0.00360683"/> <speciesReference species="saturated_calditolcaldarchaeol" stoichiometry="0.00631195"/> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="0.0120228"/> <speciesReference species="representative_quinone" stoichiometry="0.00180341"/> <speciesReference species="saturated_glycolipidcaldarchaeol" stoichiometry="0.00270512"/> <speciesReference species="saturated_inositolcaldarchaeol" stoichiometry="0.00360683"/> <speciesReference species="saturated_inositolcalditolcaldarchaeol" stoichiometry="0.0252478"/> <speciesReference species="saturated_sulfoglycolipidcaldarchaeol" stoichiometry="0.00480911"/> <speciesReference species="glycogen" stoichiometry="0.663134"/> <speciesReference species="putrescine" stoichiometry="0.000840286"/> <speciesReference species="norspermine" stoichiometry="0.00378129"/> <speciesReference species="norspermidine" stoichiometry="0.00336114"/> <speciesReference species="spermidine" stoichiometry="0.0142849"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="5.07457"/> <speciesReference species="Biomass_Sulfolobus" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="Biomass-casamino-acids" name="Biomass-casamino-acids" reversible="false"> <listOfReactants> <speciesReference species="dGMP" stoichiometry="0.00656603"/> <speciesReference species="dAMP" stoichiometry="0.0117814"/> <speciesReference species="dTMP" stoichiometry="0.0117814"/> <speciesReference species="dCMP" stoichiometry="0.00656603"/> <speciesReference species="AMP" stoichiometry="0.0221585"/> <speciesReference species="GMP" stoichiometry="0.0124455"/> <speciesReference species="UMP" stoichiometry="0.0223961"/> <speciesReference species="CMP" stoichiometry="0.0123857"/> <speciesReference species="L-proline" stoichiometry="0.229663"/> <speciesReference species="L-aspartate" stoichiometry="0.282706"/> <speciesReference species="L-lysine" stoichiometry="0.463253"/> <speciesReference species="L-glutamate" stoichiometry="0.409904"/> <speciesReference species="glycine" stoichiometry="0.387841"/> <speciesReference species="L-leucine" stoichiometry="0.623665"/> <speciesReference species="L-valine" stoichiometry="0.448509"/> <speciesReference species="L-glutamine" stoichiometry="0.126587"/> <speciesReference species="L-histidine" stoichiometry="0.0779145"/> <speciesReference species="L-tyrosine" stoichiometry="0.290286"/> <speciesReference species="L-methionine" stoichiometry="0.132537"/> <speciesReference species="L-phenylalanine" stoichiometry="0.267001"/> <speciesReference species="L-serine" stoichiometry="0.404456"/> <speciesReference species="L-asparagine" stoichiometry="0.299714"/> <speciesReference species="L-tryptophan" stoichiometry="0.0631769"/> <speciesReference species="L-cysteine" stoichiometry="0.0372369"/> <speciesReference species="L-isoleucine" stoichiometry="0.572091"/> <speciesReference species="L-threonine" stoichiometry="0.285092"/> <speciesReference species="L-arginine" stoichiometry="0.282059"/> <speciesReference species="L-alanine" stoichiometry="0.338529"/> <speciesReference species="NAD+" stoichiometry="0.00312953"/> <speciesReference species="UDP-alpha-N-acetyl-D-glucosamine" stoichiometry="0.000143887"/> <speciesReference species="NADH" stoichiometry="0.000143887"/> <speciesReference species="L-homocysteine" stoichiometry="0.00153059"/> <speciesReference species="thiamin_diphosphate" stoichiometry="0.000143887"/> <speciesReference species="phosphoenolpyruvate" stoichiometry="0.000744613"/> <speciesReference species="pyridoxal_5'-phosphate" stoichiometry="0.000143887"/> <speciesReference species="propanoyl-CoA" stoichiometry="2.19247e-05"/> <speciesReference species="shikimate" stoichiometry="5.79143e-05"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="0.0335795"/> <speciesReference species="sn-glycerol-3-phosphate" stoichiometry="0.00020324"/> <speciesReference species="NADPH" stoichiometry="0.000575546"/> <speciesReference species="coenzyme_B12" stoichiometry="0.00669072"/> <speciesReference species="NADP+" stoichiometry="0.000143887"/> <speciesReference species="trehalose" stoichiometry="0.00114967"/> <speciesReference species="coenzyme_A" stoichiometry="0.000143887"/> <speciesReference species="FAD" stoichiometry="1.79858e-05"/> <speciesReference species="saturated_inositolglycolipidcaldarchaeol" stoichiometry="0.00284411"/> <speciesReference species="saturated_calditolcaldarchaeol" stoichiometry="0.00497719"/> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="0.00948036"/> <speciesReference species="representative_quinone" stoichiometry="0.00142205"/> <speciesReference species="saturated_glycolipidcaldarchaeol" stoichiometry="0.00213308"/> <speciesReference species="saturated_inositolcaldarchaeol" stoichiometry="0.00284411"/> <speciesReference species="saturated_inositolcalditolcaldarchaeol" stoichiometry="0.0199088"/> <speciesReference species="saturated_sulfoglycolipidcaldarchaeol" stoichiometry="0.00379214"/> <speciesReference species="glycogen" stoichiometry="0.522904"/> <speciesReference species="putrescine" stoichiometry="0.000662594"/> <speciesReference species="norspermine" stoichiometry="0.00298167"/> <speciesReference species="norspermidine" stoichiometry="0.00265038"/> <speciesReference species="spermidine" stoichiometry="0.0112641"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="6.02222"/> <speciesReference species="Biomass_Sulfolobus" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="GAM" name="GAM" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="27.309"/> <speciesReference species="H2O" stoichiometry="27.309"/> <speciesReference species="Biomass_Sulfolobus" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="27.309"/> <speciesReference species="phosphate" stoichiometry="27.309"/> <speciesReference species="H+" stoichiometry="27.309"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0628507245"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="NGAM" name="NGAM" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="5.5413"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="5.5413"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_Arabinan" name="T_flux_Arabinan" reversible="true"> <listOfReactants> <speciesReference species="Arabinan_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_Ca2+" name="T_flux_Ca2+" reversible="true"> <listOfReactants> <speciesReference species="Ca2+_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_Na+" name="T_flux_Na+" reversible="true"> <listOfReactants> <speciesReference species="Na+_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_cellulose" name="T_flux_cellulose" reversible="true"> <listOfReactants> <speciesReference species="cellulose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_dextrin" name="T_flux_dextrin" reversible="true"> <listOfReactants> <speciesReference species="dextrin_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_melezitose" name="T_flux_melezitose" reversible="true"> <listOfReactants> <speciesReference species="melezitose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_starch" name="T_flux_starch" reversible="true"> <listOfReactants> <speciesReference species="starch_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_xylan" name="T_flux_xylan" reversible="true"> <listOfReactants> <speciesReference species="xylan_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_sink_4-nitrophenol" name="T_sink_4-nitrophenol" reversible="false"> <listOfReactants> <speciesReference species="4-nitrophenol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_sink_5-deoxy-alpha-ribose_1-phosphate" name="T_sink_5-deoxy-alpha-ribose_1-phosphate" reversible="false"> <listOfReactants> <speciesReference species="5-deoxy-alpha-ribose_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.80312e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_sink_D-ribose-5-phosphate" name="T_sink_D-ribose-5-phosphate" reversible="false"> <listOfReactants> <speciesReference species="D-ribose-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_sink_D-sedoheptulose-7-phosphate" name="T_sink_D-sedoheptulose-7-phosphate" reversible="false"> <listOfReactants> <speciesReference species="D-sedoheptulose-7-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_sink_D-xylulose-5-phosphate" name="T_sink_D-xylulose-5-phosphate" reversible="false"> <listOfReactants> <speciesReference species="D-xylulose-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0370258056"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_sink_dialurate" name="T_sink_dialurate" reversible="false"> <listOfReactants> <speciesReference species="dialurate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_sink_urea" name="T_sink_urea" reversible="false"> <listOfReactants> <speciesReference species="urea" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0007473053"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_Co2+" name="T_flux_Co2+" reversible="true"> <listOfReactants> <speciesReference species="Co2+_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0004192275"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_Co2+" name="T_ABC-transporter_Co2+" reversible="false"> <listOfReactants> <speciesReference species="Co2+_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="Co2+" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1893, SSO2030, SSO2031</html:p> </notes> </reaction> <reaction id="T_flux_Cu2+" name="T_flux_Cu2+" reversible="true"> <listOfReactants> <speciesReference species="Cu2+_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_Cu2+" name="T_ABC-transporter_Cu2+" reversible="false"> <listOfReactants> <speciesReference species="Cu2+_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="Cu2+" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2651, SSO2896</html:p> </notes> </reaction> <reaction id="T_flux_Fe3+" name="T_flux_Fe3+" reversible="true"> <listOfReactants> <speciesReference species="Fe3+_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_Fe3+" name="T_ABC-transporter_Fe3+" reversible="false"> <listOfReactants> <speciesReference species="Fe3+_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="Fe3+" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0128, SSO0485, SSO0486, SSO0487</html:p> </notes> </reaction> <reaction id="T_flux_nitrate" name="T_flux_nitrate" reversible="true"> <listOfReactants> <speciesReference species="nitrate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_nitrate" name="T_ABC-transporter_nitrate" reversible="false"> <listOfReactants> <speciesReference species="nitrate_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="nitrate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2468, SSO2469</html:p> </notes> </reaction> <reaction id="T_flux_xanthine" name="T_flux_xanthine" reversible="true"> <listOfReactants> <speciesReference species="xanthine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_xanthine" name="T_trans_xanthine" reversible="false"> <listOfReactants> <speciesReference species="xanthine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="xanthine_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_CO2" name="T_flux_CO2" reversible="true"> <listOfReactants> <speciesReference species="CO2_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="4.3632353461"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_CO2" name="T_trans_CO2" reversible="true"> <listOfReactants> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="4.3632353461"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_H+" name="T_flux_H+" reversible="true"> <listOfReactants> <speciesReference species="H+_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_H+" name="T_trans_H+" reversible="true"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_H2O" name="T_flux_H2O" reversible="true"> <listOfReactants> <speciesReference species="H2O_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="5.7579277167"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_H2O" name="T_trans_H2O" reversible="true"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="5.7579277167"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_carbon_monoxide" name="T_flux_carbon_monoxide" reversible="true"> <listOfReactants> <speciesReference species="carbon_monoxide_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_carbon_monoxide" name="T_trans_carbon_monoxide" reversible="true"> <listOfReactants> <speciesReference species="carbon_monoxide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="carbon_monoxide_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_chloride" name="T_flux_chloride" reversible="true"> <listOfReactants> <speciesReference species="chloride_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_chloride" name="T_trans_chloride" reversible="true"> <listOfReactants> <speciesReference species="chloride" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="chloride_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3202</html:p> </notes> </reaction> <reaction id="T_flux_oxygen" name="T_flux_oxygen" reversible="true"> <listOfReactants> <speciesReference species="oxygen_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-4.7530474053"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_oxygen" name="T_trans_oxygen" reversible="true"> <listOfReactants> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="oxygen_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-4.7530474053"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_(1,4)-beta-xylobiose" name="T_flux_(1,4)-beta-xylobiose" reversible="true"> <listOfReactants> <speciesReference species="(1,4)-beta-xylobiose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_(1,4)-beta-xylobiose" name="T_ABC-transporter_(1,4)-beta-xylobiose" reversible="false"> <listOfReactants> <speciesReference species="(1,4)-beta-xylobiose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(1,4)-beta-xylobiose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_(R)-acetoin" name="T_flux_(R)-acetoin" reversible="true"> <listOfReactants> <speciesReference species="(R)-acetoin_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_(R)-acetoin" name="T_ABC-transporter_(R)-acetoin" reversible="false"> <listOfReactants> <speciesReference species="(R)-acetoin_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(R)-acetoin" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_(S)-lactic_acid" name="T_flux_(S)-lactic_acid" reversible="true"> <listOfReactants> <speciesReference species="(S)-lactic_acid_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_D-arabinofuranose" name="T_flux_D-arabinofuranose" reversible="true"> <listOfReactants> <speciesReference species="D-arabinofuranose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_D-arabinofuranose" name="T_ABC-transporter_D-arabinofuranose" reversible="false"> <listOfReactants> <speciesReference species="D-arabinofuranose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-arabinofuranose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3067, SSO3068</html:p> </notes> </reaction> <reaction id="T_flux_D-fucose" name="T_flux_D-fucose" reversible="true"> <listOfReactants> <speciesReference species="D-fucose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_D-fucose" name="T_ABC-transporter_D-fucose" reversible="false"> <listOfReactants> <speciesReference species="D-fucose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-fucose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_D-mannose" name="T_flux_D-mannose" reversible="true"> <listOfReactants> <speciesReference species="D-mannose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_D-mannose" name="T_ABC-transporter_D-mannose" reversible="false"> <listOfReactants> <speciesReference species="D-mannose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-mannose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-alanine" name="T_flux_L-alanine" reversible="true"> <listOfReactants> <speciesReference species="L-alanine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-alanine" name="T_ABC-transporter_L-alanine" reversible="false"> <listOfReactants> <speciesReference species="L-alanine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-alanine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-arabinobiose" name="T_flux_L-arabinobiose" reversible="true"> <listOfReactants> <speciesReference species="L-arabinobiose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-arabinobiose" name="T_ABC-transporter_L-arabinobiose" reversible="false"> <listOfReactants> <speciesReference species="L-arabinobiose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-arabinobiose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-arabinofuranose" name="T_flux_L-arabinofuranose" reversible="true"> <listOfReactants> <speciesReference species="L-arabinofuranose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-arabinofuranose" name="T_ABC-transporter_L-arabinofuranose" reversible="false"> <listOfReactants> <speciesReference species="L-arabinofuranose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-arabinofuranose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-arginine" name="T_flux_L-arginine" reversible="true"> <listOfReactants> <speciesReference species="L-arginine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-arginine" name="T_ABC-transporter_L-arginine" reversible="false"> <listOfReactants> <speciesReference species="L-arginine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-arginine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-asparagine" name="T_flux_L-asparagine" reversible="true"> <listOfReactants> <speciesReference species="L-asparagine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-aspartate" name="T_flux_L-aspartate" reversible="true"> <listOfReactants> <speciesReference species="L-aspartate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-aspartate" name="T_ABC-transporter_L-aspartate" reversible="false"> <listOfReactants> <speciesReference species="L-aspartate_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-aspartate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-fucopyranose" name="T_flux_L-fucopyranose" reversible="true"> <listOfReactants> <speciesReference species="L-fucopyranose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-1.21"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-1.21"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-fucopyranose" name="T_ABC-transporter_L-fucopyranose" reversible="false"> <listOfReactants> <speciesReference species="L-fucopyranose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-fucopyranose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.21"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3067, SSO3068</html:p> </notes> </reaction> <reaction id="T_flux_L-glutamate" name="T_flux_L-glutamate" reversible="true"> <listOfReactants> <speciesReference species="L-glutamate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-glutamate" name="T_ABC-transporter_L-glutamate" reversible="false"> <listOfReactants> <speciesReference species="L-glutamate_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-histidine" name="T_flux_L-histidine" reversible="true"> <listOfReactants> <speciesReference species="L-histidine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-histidine" name="T_ABC-transporter_L-histidine" reversible="false"> <listOfReactants> <speciesReference species="L-histidine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-histidine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-isoleucine" name="T_flux_L-isoleucine" reversible="true"> <listOfReactants> <speciesReference species="L-isoleucine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-isoleucine" name="T_ABC-transporter_L-isoleucine" reversible="false"> <listOfReactants> <speciesReference species="L-isoleucine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-isoleucine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-leucine" name="T_flux_L-leucine" reversible="true"> <listOfReactants> <speciesReference species="L-leucine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-leucine" name="T_ABC-transporter_L-leucine" reversible="false"> <listOfReactants> <speciesReference species="L-leucine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-leucine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-methionine" name="T_flux_L-methionine" reversible="true"> <listOfReactants> <speciesReference species="L-methionine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-methionine" name="T_ABC-transporter_L-methionine" reversible="false"> <listOfReactants> <speciesReference species="L-methionine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-methionine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-phenylalanine" name="T_flux_L-phenylalanine" reversible="true"> <listOfReactants> <speciesReference species="L-phenylalanine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-phenylalanine" name="T_ABC-transporter_L-phenylalanine" reversible="false"> <listOfReactants> <speciesReference species="L-phenylalanine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-phenylalanine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-proline" name="T_flux_L-proline" reversible="true"> <listOfReactants> <speciesReference species="L-proline_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-serine" name="T_flux_L-serine" reversible="true"> <listOfReactants> <speciesReference species="L-serine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-serine" name="T_ABC-transporter_L-serine" reversible="false"> <listOfReactants> <speciesReference species="L-serine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-serine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-threonine" name="T_flux_L-threonine" reversible="true"> <listOfReactants> <speciesReference species="L-threonine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-threonine" name="T_ABC-transporter_L-threonine" reversible="false"> <listOfReactants> <speciesReference species="L-threonine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-threonine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_L-valine" name="T_flux_L-valine" reversible="true"> <listOfReactants> <speciesReference species="L-valine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_L-valine" name="T_ABC-transporter_L-valine" reversible="false"> <listOfReactants> <speciesReference species="L-valine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-valine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_N-acetyl-L-glutamate" name="T_flux_N-acetyl-L-glutamate" reversible="true"> <listOfReactants> <speciesReference species="N-acetyl-L-glutamate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_N-acetyl-L-glutamate" name="T_ABC-transporter_N-acetyl-L-glutamate" reversible="false"> <listOfReactants> <speciesReference species="N-acetyl-L-glutamate_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-acetyl-L-glutamate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_acetone" name="T_flux_acetone" reversible="true"> <listOfReactants> <speciesReference species="acetone_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_acetone" name="T_ABC-transporter_acetone" reversible="false"> <listOfReactants> <speciesReference species="acetone_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetone" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_alpha-D-xylopyranose" name="T_flux_alpha-D-xylopyranose" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-xylopyranose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_alpha-D-xylopyranose" name="T_ABC-transporter_alpha-D-xylopyranose" reversible="false"> <listOfReactants> <speciesReference species="alpha-D-xylopyranose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-xylopyranose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_beta-D-fructofuranose" name="T_flux_beta-D-fructofuranose" reversible="true"> <listOfReactants> <speciesReference species="beta-D-fructofuranose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_beta-D-fructofuranose" name="T_ABC-transporter_beta-D-fructofuranose" reversible="false"> <listOfReactants> <speciesReference species="beta-D-fructofuranose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-fructofuranose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_beta-D-galactose" name="T_flux_beta-D-galactose" reversible="true"> <listOfReactants> <speciesReference species="beta-D-galactose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_beta-D-galactose" name="T_ABC-transporter_beta-D-galactose" reversible="false"> <listOfReactants> <speciesReference species="beta-D-galactose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-galactose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_beta-D-glucose" name="T_flux_beta-D-glucose" reversible="true"> <listOfReactants> <speciesReference species="beta-D-glucose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_beta-D-glucose" name="T_ABC-transporter_beta-D-glucose" reversible="false"> <listOfReactants> <speciesReference species="beta-D-glucose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_beta-maltose" name="T_flux_beta-maltose" reversible="true"> <listOfReactants> <speciesReference species="beta-maltose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_beta-maltose" name="T_ABC-transporter_beta-maltose" reversible="false"> <listOfReactants> <speciesReference species="beta-maltose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-maltose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1168, SSO1169, SSO1170, SSO1171, SSO3053, SSO3055, SSO3058, SSO3059</html:p> </notes> </reaction> <reaction id="T_flux_carbonic_acid" name="T_flux_carbonic_acid" reversible="true"> <listOfReactants> <speciesReference species="carbonic_acid_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_carbonic_acid" name="T_ABC-transporter_carbonic_acid" reversible="false"> <listOfReactants> <speciesReference species="carbonic_acid_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="carbonic_acid" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_cellobiose" name="T_flux_cellobiose" reversible="true"> <listOfReactants> <speciesReference species="cellobiose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_cellobiose" name="T_ABC-transporter_cellobiose" reversible="false"> <listOfReactants> <speciesReference species="cellobiose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cellobiose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_citric_acid" name="T_flux_citric_acid" reversible="true"> <listOfReactants> <speciesReference species="citric_acid_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_citric_acid" name="T_ABC-transporter_citric_acid" reversible="false"> <listOfReactants> <speciesReference species="citric_acid_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="citric_acid" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_ethanol" name="T_flux_ethanol" reversible="true"> <listOfReactants> <speciesReference species="ethanol_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_ethanol" name="T_ABC-transporter_ethanol" reversible="false"> <listOfReactants> <speciesReference species="ethanol_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ethanol" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_glycine" name="T_flux_glycine" reversible="true"> <listOfReactants> <speciesReference species="glycine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_glycine" name="T_ABC-transporter_glycine" reversible="false"> <listOfReactants> <speciesReference species="glycine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glycine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_inosine" name="T_flux_inosine" reversible="true"> <listOfReactants> <speciesReference species="inosine_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_inosine" name="T_ABC-transporter_inosine" reversible="false"> <listOfReactants> <speciesReference species="inosine_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="inosine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_isopropanol" name="T_flux_isopropanol" reversible="true"> <listOfReactants> <speciesReference species="isopropanol_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_isopropanol" name="T_ABC-transporter_isopropanol" reversible="false"> <listOfReactants> <speciesReference species="isopropanol_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="isopropanol" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_lactose" name="T_flux_lactose" reversible="true"> <listOfReactants> <speciesReference species="lactose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_lactose" name="T_ABC-transporter_lactose" reversible="false"> <listOfReactants> <speciesReference species="lactose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="lactose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_lactulose" name="T_flux_lactulose" reversible="true"> <listOfReactants> <speciesReference species="lactulose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_lactulose" name="T_ABC-transporter_lactulose" reversible="false"> <listOfReactants> <speciesReference species="lactulose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="lactulose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_maltotriose" name="T_flux_maltotriose" reversible="true"> <listOfReactants> <speciesReference species="maltotriose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_maltotriose" name="T_ABC-transporter_maltotriose" reversible="false"> <listOfReactants> <speciesReference species="maltotriose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="maltotriose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1168, SSO1169, SSO1170, SSO1171, SSO3053, SSO3055, SSO3058, SSO3059</html:p> </notes> </reaction> <reaction id="T_flux_melibiose" name="T_flux_melibiose" reversible="true"> <listOfReactants> <speciesReference species="melibiose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_melibiose" name="T_ABC-transporter_melibiose" reversible="false"> <listOfReactants> <speciesReference species="melibiose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="melibiose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_n-propanol" name="T_flux_n-propanol" reversible="true"> <listOfReactants> <speciesReference species="n-propanol_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_n-propanol" name="T_ABC-transporter_n-propanol" reversible="false"> <listOfReactants> <speciesReference species="n-propanol_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="n-propanol" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_phenol" name="T_flux_phenol" reversible="true"> <listOfReactants> <speciesReference species="phenol_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_phenol" name="T_ABC-transporter_phenol" reversible="false"> <listOfReactants> <speciesReference species="phenol_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phenol" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_raffinose" name="T_flux_raffinose" reversible="true"> <listOfReactants> <speciesReference species="raffinose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_raffinose" name="T_ABC-transporter_raffinose" reversible="false"> <listOfReactants> <speciesReference species="raffinose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="raffinose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_succinic_acid" name="T_flux_succinic_acid" reversible="true"> <listOfReactants> <speciesReference species="succinic_acid_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_succinic_acid" name="T_ABC-transporter_succinic_acid" reversible="false"> <listOfReactants> <speciesReference species="succinic_acid_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="succinic_acid" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_sucrose" name="T_flux_sucrose" reversible="true"> <listOfReactants> <speciesReference species="sucrose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_sucrose" name="T_ABC-transporter_sucrose" reversible="false"> <listOfReactants> <speciesReference species="sucrose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="sucrose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_trehalose" name="T_flux_trehalose" reversible="true"> <listOfReactants> <speciesReference species="trehalose_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_trehalose" name="T_ABC-transporter_trehalose" reversible="false"> <listOfReactants> <speciesReference species="trehalose_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="trehalose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0999, SSO1000, SSO1001, SSO1003</html:p> </notes> </reaction> <reaction id="T_flux_ammonium" name="T_flux_ammonium" reversible="true"> <listOfReactants> <speciesReference species="ammonium_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.5507651405"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_ammonium" name="T_trans_ammonium" reversible="true"> <listOfReactants> <speciesReference species="ammonium" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonium_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.5507651405"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1054</html:p> </notes> </reaction> <reaction id="T_flux_hydrogen_sulfide" name="T_flux_hydrogen_sulfide" reversible="true"> <listOfReactants> <speciesReference species="hydrogen_sulfide_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_hydrogen_sulfide" name="T_trans_hydrogen_sulfide" reversible="true"> <listOfReactants> <speciesReference species="hydrogen_sulfide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydrogen_sulfide_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_sulfate" name="T_flux_sulfate" reversible="true"> <listOfReactants> <speciesReference species="sulfate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.010624411"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_sulfate" name="T_trans_sulfate" reversible="true"> <listOfReactants> <speciesReference species="sulfate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="sulfate_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.010624411"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1032, SSO1034</html:p> </notes> </reaction> <reaction id="T_flux_dihydrogen_phosphate" name="T_flux_dihydrogen_phosphate" reversible="true"> <listOfReactants> <speciesReference species="dihydrogen_phosphate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_ABC-transporter_dihydrogen_phosphate" name="T_ABC-transporter_dihydrogen_phosphate" reversible="false"> <listOfReactants> <speciesReference species="dihydrogen_phosphate_ex" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dihydrogen_phosphate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0290, SSO0488, SSO0489, SSO0490, SSO0491, SSO2461, SSO3180</html:p> </notes> </reaction> <reaction id="T_symporter_L-asparagine" name="T_symporter_L-asparagine" reversible="true"> <listOfReactants> <speciesReference species="L-asparagine" stoichiometry="1.0"/> <speciesReference species="Na+" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-asparagine_ex" stoichiometry="1.0"/> <speciesReference species="Na+_ex" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1069, SSO1906</html:p> </notes> </reaction> <reaction id="T_symporter_(S)-lactic_acid" name="T_symporter_(S)-lactic_acid" reversible="true"> <listOfReactants> <speciesReference species="(S)-lactic_acid" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-lactic_acid_ex" stoichiometry="1.0"/> <speciesReference species="H+_ex" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2126</html:p> </notes> </reaction> <reaction id="T_symporter_Na+" name="T_symporter_Na+" reversible="true"> <listOfReactants> <speciesReference species="Na+" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="Na+_ex" stoichiometry="1.0"/> <speciesReference species="H+_ex" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0376, SSO1138, SSO2965</html:p> </notes> </reaction> <reaction id="T_antiporter_Ca2+" name="T_antiporter_Ca2+" reversible="true"> <listOfReactants> <speciesReference species="Ca2+" stoichiometry="1.0"/> <speciesReference species="Na+_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="Ca2+_ex" stoichiometry="1.0"/> <speciesReference species="Na+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1174</html:p> </notes> </reaction> <reaction id="T_symporter_L-proline" name="T_symporter_L-proline" reversible="true"> <listOfReactants> <speciesReference species="L-proline" stoichiometry="1.0"/> <speciesReference species="Na+" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-proline_ex" stoichiometry="1.0"/> <speciesReference species="Na+_ex" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1539, SSO2113, SSO2528, SSO2558, SSO2852, SSO3147</html:p> </notes> </reaction> <reaction id="test_L-fuc01_KDF-aldolase" name="test_L-fuc01_KDF-aldolase" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-L-fuconate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="L-lactaldehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc01_1.2.1.22_LACTALDDEHYDROG-RXN" name="test_L-fuc01_1.2.1.22_LACTALDDEHYDROG-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-lactaldehyde" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="(S)-lactate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc02_1.1.1.1_lactaldehyde-reductase" name="test_L-fuc02_1.1.1.1_lactaldehyde-reductase" reversible="true"> <listOfReactants> <speciesReference species="L-1,2-propanediol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="L-lactaldehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc02_4.2.1.28_PROPANEDIOL-DEHYDRATASE-RXN" name="test_L-fuc02_4.2.1.28_PROPANEDIOL-DEHYDRATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-1,2-propanediol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="propanal" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc05_2-keto-3-deoxy-L-fuconate-dehydrogenase" name="test_L-fuc05_2-keto-3-deoxy-L-fuconate-dehydrogenase" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-L-fuconate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,4-diketo-3-deoxy-L-fuconate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.21"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc05_2,4-diketo-3-deoxy-L-fuconate-hydrolase" name="test_L-fuc05_2,4-diketo-3-deoxy-L-fuconate-hydrolase" reversible="false"> <listOfReactants> <speciesReference species="2,4-diketo-3-deoxy-L-fuconate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="(S)-lactate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.21"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc06_2-keto-3-deoxy-L-fuconate-dehydratase" name="test_L-fuc06_2-keto-3-deoxy-L-fuconate-dehydratase" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-L-fuconate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="2,4-diketo-3,5-deoxy-L-fuconate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc06_2,4-diketo-3,5-deoxy-L-fuconate-aldolase" name="test_L-fuc06_2,4-diketo-3,5-deoxy-L-fuconate-aldolase" reversible="false"> <listOfReactants> <speciesReference species="2,4-diketo-3,5-deoxy-L-fuconate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="propanal" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc03_kinase-and-isomerase_H6P" name="test_L-fuc03_kinase-and-isomerase_H6P" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-fucopyranose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="hexulose_6-phosphate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc03_kinase-and-isomerase_F6P" name="test_L-fuc03_kinase-and-isomerase_F6P" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-fucopyranose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc04_ecoli_5.3.1.25_FUCISOM-RXN" name="test_L-fuc04_ecoli_5.3.1.25_FUCISOM-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-fucopyranose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-fuculose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc04_ecoli_2.7.1.51_FUCULOKIN-RXN" name="test_L-fuc04_ecoli_2.7.1.51_FUCULOKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-fuculose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="L-fuculose-1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc04_ecoli_4.1.2.17_FUCPALDOL-RXN" name="test_L-fuc04_ecoli_4.1.2.17_FUCPALDOL-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-fuculose-1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dihydroxyacetone_phosphate" stoichiometry="1.0"/> <speciesReference species="L-lactaldehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_L-fuc04_ecoli_1.2.1.22_LACTALDDEHYDROG-RXN" name="test_L-fuc04_ecoli_1.2.1.22_LACTALDDEHYDROG-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-lactaldehyde" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="(S)-lactate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p01_2.7.1.11_6PFRUCTPHOS-RXN" name="test_sh7p01_2.7.1.11_6PFRUCTPHOS-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="fructose-1,6-bisphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p01_2.7.1.11_RXN0-6541" name="test_sh7p01_2.7.1.11_RXN0-6541" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="D-sedoheptulose-7-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-sedoheptulose-1,7-bisphosphate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p02_2.2.1.2_TRANSALDOL-RXN" name="test_sh7p02_2.2.1.2_TRANSALDOL-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-sedoheptulose-7-phosphate" stoichiometry="1.0"/> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> <speciesReference species="D-erythrose-4-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p02_2.2.1.2_RXN0-313" name="test_sh7p02_2.2.1.2_RXN0-313" reversible="true"> <listOfReactants> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dihydroxyacetone" stoichiometry="1.0"/> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p03_5.1.3.1_RIBULP3EPIM-RXN" name="test_sh7p03_5.1.3.1_RIBULP3EPIM-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-ribulose-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-xylulose-5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p04_phosphatase" name="test_sh7p04_phosphatase" reversible="false"> <listOfReactants> <speciesReference species="D-xylulose-5-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-xylulose" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p04_5.3.1.5_BR236" name="test_sh7p04_5.3.1.5_BR236" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-xylopyranose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-xylulose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p05_phosphatase" name="test_sh7p05_phosphatase" reversible="false"> <listOfReactants> <speciesReference species="D-xylulose-5-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-xylulose" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="test_sh7p05_5.3.1.5_BR236" name="test_sh7p05_5.3.1.5_BR236" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-xylopyranose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-xylulose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="UPPER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_entner_1.1.1.359_GLUCOSE-1-DEHYDROGENASE-NAD+-RXN" name="carb_entner_1.1.1.359_GLUCOSE-1-DEHYDROGENASE-NAD+-RXN" reversible="false"> <listOfReactants> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glucono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3003, SSO3204</html:p> </notes> </reaction> <reaction id="carb_entner_1.1.1.47_GLUCOSE-1-DEHYDROGENASE-NAD+-RXN" name="carb_entner_1.1.1.47_GLUCOSE-1-DEHYDROGENASE-NAD+-RXN" reversible="false"> <listOfReactants> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glucono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3003, SSO3042, SSO3204</html:p> </notes> </reaction> <reaction id="carb_entner_1.1.1.360_GLUCOSE-1-DEHYDROGENASE-NADP+-RXN" name="carb_entner_1.1.1.360_GLUCOSE-1-DEHYDROGENASE-NADP+-RXN" reversible="false"> <listOfReactants> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glucono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3042</html:p> </notes> </reaction> <reaction id="carb_entner_3.1.1.17_GLUCONOLACT-RXN" name="carb_entner_3.1.1.17_GLUCONOLACT-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-glucono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-gluconate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2705</html:p> </notes> </reaction> <reaction id="carb_entner_4.2.1.140_GLUCONATE-DEHYDRATASE-RXN" name="carb_entner_4.2.1.140_GLUCONATE-DEHYDRATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-gluconate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydro-3-deoxy-D-gluconate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3198</html:p> </notes> </reaction> <reaction id="carb_entner_4.1.2.55_DHDOGALDOL-RXN" name="carb_entner_4.1.2.55_DHDOGALDOL-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-D-gluconate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glyceraldehyde" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3197</html:p> </notes> </reaction> <reaction id="carb_entner_1.2.1.89_GLYCERALDEHYDE-DEHYDRO-RXN" name="carb_entner_1.2.1.89_GLYCERALDEHYDE-DEHYDRO-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-glyceraldehyde" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="D-glycerate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="10.4068728889"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1629</html:p> </notes> </reaction> <reaction id="carb_entner_2.7.1.165_GKI-RXN" name="carb_entner_2.7.1.165_GKI-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="D-glycerate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-phospho-D-glycerate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0666</html:p> </notes> </reaction> <reaction id="carb_entner_2.7.1.178_DEOXYGLUCONOKIN-RXN" name="carb_entner_2.7.1.178_DEOXYGLUCONOKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-D-gluconate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydro-3-deoxy-D-gluconate_6-phosphate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3195</html:p> </notes> </reaction> <reaction id="carb_entner_2.7.1.178_DEHYDDEOXGALACTKIN-RXN" name="carb_entner_2.7.1.178_DEHYDDEOXGALACTKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-D-galactonate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="2-dehydro-3-deoxy-D-galactonate-6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3195</html:p> </notes> </reaction> <reaction id="carb_entner_4.1.2.55_KDPGALDOL-RXN" name="carb_entner_4.1.2.55_KDPGALDOL-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-D-gluconate_6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3197</html:p> </notes> </reaction> <reaction id="carb_entner_4.1.2.55_DEHYDDEOXPHOSGALACT-ALDOL-RXN" name="carb_entner_4.1.2.55_DEHYDDEOXPHOSGALACT-ALDOL-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-D-galactonate-6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3197</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_1.2.1.9_1.2.1.9-RXN" name="carb_enter_glucneo_1.2.1.9_1.2.1.9-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="3-phospho-D-glycerate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3194</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_5.4.2.1_3PGAREARR-RXN" name="carb_enter_glucneo_5.4.2.1_3PGAREARR-RXN" reversible="true"> <listOfReactants> <speciesReference species="3-phospho-D-glycerate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-phospho-D-glycerate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.3721579606"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0417</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_4.2.1.11_2PGADEHYDRAT-RXN" name="carb_enter_glucneo_4.2.1.11_2PGADEHYDRAT-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-phospho-D-glycerate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphoenolpyruvate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.3721579606"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0913</html:p> </notes> </reaction> <reaction id="carb_enter_2.7.1.40_PEPDEPHOS-RXN" name="carb_enter_2.7.1.40_PEPDEPHOS-RXN" reversible="false"> <listOfReactants> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphoenolpyruvate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0981</html:p> </notes> </reaction> <reaction id="carb_acetylcoa_1.2.7.1_PYRUFLAVREDUCT-RXN" name="carb_acetylcoa_1.2.7.1_PYRUFLAVREDUCT-RXN" reversible="false"> <listOfReactants> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="|Oxidized-ferredoxins|" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="|Reduced-ferredoxins|" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.9239809611"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO11071, SSO1206, SSO1207, SSO1208, SSO2128, SSO2129, SSO2130, SSO2756, SSO2757, SSO2758, SSO7412</html:p> </notes> </reaction> <reaction id="carb_entner_1.1.1.359_BS187080" name="carb_entner_1.1.1.359_BS187080" reversible="false"> <listOfReactants> <speciesReference species="beta-D-galactose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="D-galactono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3003, SSO3204</html:p> </notes> </reaction> <reaction id="carb_entner_1.1.1.360_galactose-nadp" name="carb_entner_1.1.1.360_galactose-nadp" reversible="false"> <listOfReactants> <speciesReference species="beta-D-galactose" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="D-galactono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3042</html:p> </notes> </reaction> <reaction id="carb_entner_1.1.1.359_xylose-nad" name="carb_entner_1.1.1.359_xylose-nad" reversible="false"> <listOfReactants> <speciesReference species="alpha-D-xylopyranose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="D-xylonolactone" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3003, SSO3204</html:p> </notes> </reaction> <reaction id="carb_entner_1.1.1.359_L-arabinose-nad" name="carb_entner_1.1.1.359_L-arabinose-nad" reversible="false"> <listOfReactants> <speciesReference species="L-arabinofuranose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-arabinono-1,4-lactone" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3003, SSO3204</html:p> </notes> </reaction> <reaction id="carb_entner_1.1.1.360_L-arabinose-nadp" name="carb_entner_1.1.1.360_L-arabinose-nadp" reversible="false"> <listOfReactants> <speciesReference species="L-arabinofuranose" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-arabinono-1,4-lactone" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3042</html:p> </notes> </reaction> <reaction id="carb_entner_1.1.1.359_D-fucose-nad" name="carb_entner_1.1.1.359_D-fucose-nad" reversible="false"> <listOfReactants> <speciesReference species="D-fucose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="D-fucono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3003, SSO3204</html:p> </notes> </reaction> <reaction id="carb_entner_3.1.1.17_BS381743" name="carb_entner_3.1.1.17_BS381743" reversible="false"> <listOfReactants> <speciesReference species="D-galactono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-galactonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2705</html:p> </notes> </reaction> <reaction id="carb_entner_3.1.1.17_BS400799" name="carb_entner_3.1.1.17_BS400799" reversible="false"> <listOfReactants> <speciesReference species="D-xylonolactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-xylonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2705</html:p> </notes> </reaction> <reaction id="carb_entner_3.1.1.17_L-arabinose" name="carb_entner_3.1.1.17_L-arabinose" reversible="false"> <listOfReactants> <speciesReference species="L-arabinono-1,4-lactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-arabinonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2705</html:p> </notes> </reaction> <reaction id="carb_entner_4.2.1.140_GALACTONDEHYDRAT-RXN" name="carb_entner_4.2.1.140_GALACTONDEHYDRAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-galactonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydro-3-deoxy-D-galactonate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3198</html:p> </notes> </reaction> <reaction id="carb_entner_4.1.2.55_BS380992" name="carb_entner_4.1.2.55_BS380992" reversible="true"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-D-galactonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glyceraldehyde" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3197</html:p> </notes> </reaction> <reaction id="carb_2.7.1.1_BR47759" name="carb_2.7.1.1_BR47759" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="beta-D-glucose-6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_2.7.1.1_FRUCTOKINASE-RXN" name="carb_2.7.1.1_FRUCTOKINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="beta-D-fructofuranose" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-fructofuranose_6-phosphate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_anap_4.1.1.32_4.1.1.32-RXN" name="carb_anap_4.1.1.32_4.1.1.32-RXN" reversible="false"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="oxaloacetate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="GDP" stoichiometry="1.0"/> <speciesReference species="phosphoenolpyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" 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units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2256</html:p> </notes> </reaction> <reaction id="carb_anap_1.1.1.40_MALIC-NADP-RXN" name="carb_anap_1.1.1.40_MALIC-NADP-RXN" reversible="false"> <listOfReactants> <speciesReference species="(S)-malate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2869</html:p> </notes> </reaction> <reaction id="carb_anap_1.1.1.40_4.1.1.3_OXALODECARB-RXN" name="carb_anap_1.1.1.40_4.1.1.3_OXALODECARB-RXN" reversible="false"> <listOfReactants> <speciesReference species="oxaloacetate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2869</html:p> </notes> </reaction> <reaction id="carb_rump_5.3.1.27_R12-RXN" name="carb_rump_5.3.1.27_R12-RXN" reversible="true"> <listOfReactants> <speciesReference species="hexulose_6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0266911812"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0151</html:p> </notes> </reaction> <reaction id="carb_rump_4.1.2.43_R10-RXN" name="carb_rump_4.1.2.43_R10-RXN" reversible="true"> <listOfReactants> <speciesReference species="hexulose_6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="formaldehyde" stoichiometry="1.0"/> <speciesReference species="D-ribulose-5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0266911812"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0202</html:p> </notes> </reaction> <reaction id="carb_ppp_5.3.1.6_RIB5PISOM-RXN" name="carb_ppp_5.3.1.6_RIB5PISOM-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-ribose-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-ribulose-5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0258504722"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0978</html:p> </notes> </reaction> <reaction id="carb_ppp_2.2.1.1_2TRANSKETO-RXN" name="carb_ppp_2.2.1.1_2TRANSKETO-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-erythrose-4-phosphate" stoichiometry="1.0"/> <speciesReference species="D-xylulose-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0370258056"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0297, SSO0299</html:p> </notes> </reaction> <reaction id="carb_ppp_2.2.1.1_1TRANSKETO-RXN" name="carb_ppp_2.2.1.1_1TRANSKETO-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-sedoheptulose-7-phosphate" stoichiometry="1.0"/> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-ribose-5-phosphate" stoichiometry="1.0"/> <speciesReference species="D-xylulose-5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0297, SSO0299</html:p> </notes> </reaction> <reaction id="carb_ppp_4.1.2.13_SEDOBISALDOL-RXN" name="carb_ppp_4.1.2.13_SEDOBISALDOL-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-erythrose-4-phosphate" stoichiometry="1.0"/> <speciesReference species="dihydroxyacetone_phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-sedoheptulose-1,7-bisphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0286</html:p> </notes> </reaction> <reaction id="carb_ppp_3.1.3.11_SEDOHEPTULOSE-BISPHOSPHATASE-RXN" name="carb_ppp_3.1.3.11_SEDOHEPTULOSE-BISPHOSPHATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-sedoheptulose-1,7-bisphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="D-sedoheptulose-7-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1079</html:p> </notes> </reaction> <reaction id="carb_glucneo_2.7.9.2_PEPSYNTH-RXN" name="carb_glucneo_2.7.9.2_PEPSYNTH-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="phosphoenolpyruvate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0883, SSO2820</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_2.7.2.3_PHOSGLYPHOS-RXN" name="carb_enter_glucneo_2.7.2.3_PHOSGLYPHOS-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="3-phospho-D-glycerate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="1,3-bisphospho-D-glycerate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.3091116467"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0527</html:p> </notes> </reaction> <reaction id="carb_glucneo_1.2.1.13_GAPDHSYNEC-RXN_NAD" name="carb_glucneo_1.2.1.13_GAPDHSYNEC-RXN_NAD" reversible="false"> <listOfReactants> <speciesReference species="1,3-bisphospho-D-glycerate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.3091116467"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0528</html:p> </notes> </reaction> <reaction id="carb_glucneo_1.2.1.13_GAPDHSYNEC-RXN_NADP" name="carb_glucneo_1.2.1.13_GAPDHSYNEC-RXN_NADP" reversible="false"> <listOfReactants> <speciesReference species="1,3-bisphospho-D-glycerate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0528</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_5.3.1.1_TRIOSEPISOMERIZATION-RXN" name="carb_enter_glucneo_5.3.1.1_TRIOSEPISOMERIZATION-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dihydroxyacetone_phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.1406505376"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2592</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_4.1.2.13_F16ALDOLASE-RXN" name="carb_enter_glucneo_4.1.2.13_F16ALDOLASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="fructose-1,6-bisphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dihydroxyacetone_phosphate" stoichiometry="1.0"/> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.1352196406"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0286</html:p> </notes> </reaction> <reaction id="carb_glucneo_3.1.3.11_F16BDEPHOS-RXN" name="carb_glucneo_3.1.3.11_F16BDEPHOS-RXN" reversible="false"> <listOfReactants> <speciesReference species="fructose-1,6-bisphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.1352196406"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1079</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_5.3.1.9_PGLUCISOM-RXN" name="carb_enter_glucneo_5.3.1.9_PGLUCISOM-RXN" reversible="true"> <listOfReactants> <speciesReference species="beta-D-glucose-6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0714936381"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2281</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_5.1.3.15_5.3.1.9_GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN" name="carb_enter_glucneo_5.1.3.15_5.3.1.9_GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-glucose_6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose-6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0698897831"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2281</html:p> </notes> </reaction> <reaction id="carb_enter_glucneo_5.4.2.2_PHOSPHOGLUCMUT-RXN" name="carb_enter_glucneo_5.4.2.2_PHOSPHOGLUCMUT-RXN" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-glucose_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-glucose_6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0698897831"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0207</html:p> </notes> </reaction> <reaction id="carb_cac_2.3.3.1_CITRATE-RE-SYNTHASE-RXN" name="carb_cac_2.3.3.1_CITRATE-RE-SYNTHASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="oxaloacetate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="citrate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.761237917"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2589</html:p> </notes> </reaction> <reaction id="carb_cac_4.2.1.3_BS18707" name="carb_cac_4.2.1.3_BS18707" reversible="false"> <listOfReactants> <speciesReference species="citrate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="cis-aconitate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.761237917"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1095</html:p> </notes> </reaction> <reaction id="carb_cac_4.2.1.3_BS18708" name="carb_cac_4.2.1.3_BS18708" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="cis-aconitate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-threo-isocitrate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.761237917"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1095</html:p> </notes> </reaction> <reaction id="carb_cac_1.1.1.42_1.1.1.41_RXN-7969" name="carb_cac_1.1.1.42_1.1.1.41_RXN-7969" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="D-threo-isocitrate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.761237917"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2182</html:p> </notes> </reaction> <reaction id="carb_cac_1.1.1.42_ISOCITDEH-RXN" name="carb_cac_1.1.1.42_ISOCITDEH-RXN" reversible="false"> <listOfReactants> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="D-threo-isocitrate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2182</html:p> </notes> </reaction> <reaction id="carb_cac_1.2.7.3_2-OXOGLUTARATE-SYNTHASE-RXN" name="carb_cac_1.2.7.3_2-OXOGLUTARATE-SYNTHASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="|Oxidized-ferredoxins|" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="succinyl-CoA" stoichiometry="1.0"/> <speciesReference species="|Reduced-ferredoxins|" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.694048994"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2816</html:p> </notes> </reaction> <reaction id="carb_cac_6.2.1.5_SUCCCOASYN-RXN" name="carb_cac_6.2.1.5_SUCCCOASYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="succinate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="succinyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-1.3380785113"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2482, SSO2483</html:p> </notes> </reaction> <reaction id="carb_cac_1.3.99.1_1.3.5.1_SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN" name="carb_cac_1.3.99.1_1.3.5.1_SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN" reversible="true"> <listOfReactants> <speciesReference species="succinate" stoichiometry="1.0"/> <speciesReference species="representative_quinone" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="fumarate" stoichiometry="1.0"/> <speciesReference species="representative_quinol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.3383286956"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2356, SSO2357, SSO2358, SSO2359</html:p> </notes> </reaction> <reaction id="carb_cac_4.2.1.2_FUMHYDR-RXN" name="carb_cac_4.2.1.2_FUMHYDR-RXN" reversible="true"> <listOfReactants> <speciesReference species="(S)-malate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="fumarate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-1.3743590035"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1077</html:p> </notes> </reaction> <reaction id="carb_cac_1.1.1.40_RXN-10813_NAD" name="carb_cac_1.1.1.40_RXN-10813_NAD" reversible="false"> <listOfReactants> <speciesReference species="(S)-malate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="oxaloacetate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2869</html:p> </notes> </reaction> <reaction id="carb_cac_1.1.1.40_RXN-10813_NADP" name="carb_cac_1.1.1.40_RXN-10813_NADP" reversible="false"> <listOfReactants> <speciesReference species="(S)-malate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="oxaloacetate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.3743590035"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2869</html:p> </notes> </reaction> <reaction id="carb_glyox_4.1.3.1_ISOCIT-CLEAV-RXN" name="carb_glyox_4.1.3.1_ISOCIT-CLEAV-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-threo-isocitrate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glyoxylate" stoichiometry="1.0"/> <speciesReference species="succinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1333</html:p> </notes> </reaction> <reaction id="carb_glyox_2.3.3.9_4.1.3.1_MALSYN-RXN" name="carb_glyox_2.3.3.9_4.1.3.1_MALSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="glyoxylate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="(S)-malate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1333, SSO1334</html:p> </notes> </reaction> <reaction id="oxp_redox_1.6.5.3_RXN0-5330" name="oxp_redox_1.6.5.3_RXN0-5330" reversible="false"> <listOfReactants> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="representative_quinone" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="representative_quinol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="8.1581151434"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0322, SSO0323, SSO0324, SSO0325, SSO0326, SSO0328, SSO0329, SSO0665</html:p> </notes> </reaction> <reaction id="oxp_redox_1.10.3.13_soxABCD_TRANS-RXN-240" name="oxp_redox_1.10.3.13_soxABCD_TRANS-RXN-240" reversible="false"> <listOfReactants> <speciesReference species="oxygen" stoichiometry="0.5"/> <speciesReference species="representative_quinol" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="6.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="representative_quinone" stoichiometry="1.0"/> <speciesReference species="H+_rc" stoichiometry="4.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.5025510731"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO10828, SSO2656, SSO2657, SSO2658</html:p> </notes> </reaction> <reaction id="oxp_redox_1.10.3.13_soxM_TRANS-RXN-240" name="oxp_redox_1.10.3.13_soxM_TRANS-RXN-240" reversible="false"> <listOfReactants> <speciesReference species="oxygen" stoichiometry="0.5"/> <speciesReference species="representative_quinol" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="representative_quinone" stoichiometry="1.0"/> <speciesReference species="H+_rc" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2968, SSO2969, SSO2970, SSO2971, SSO2972, SSO2973</html:p> </notes> </reaction> <reaction id="oxp_redox_1.10.3.13_doxABCDE_TRANS-RXN-240" name="oxp_redox_1.10.3.13_doxABCDE_TRANS-RXN-240" reversible="false"> <listOfReactants> <speciesReference species="oxygen" stoichiometry="0.5"/> <speciesReference species="representative_quinol" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="representative_quinone" stoichiometry="1.0"/> <speciesReference species="H+_rc" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0044, SSO0045, SSO1741, SSO1742, SSO5098</html:p> </notes> </reaction> <reaction id="oxp_3.6.3.14_ATP-synthase" name="oxp_3.6.3.14_ATP-synthase" reversible="false"> <listOfReactants> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="H+_rc" stoichiometry="4.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="4.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.5025510731"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0563, SSO0564</html:p> </notes> </reaction> <reaction id="cof_quinonpool" name="cof_quinonpool" reversible="true"> <listOfReactants> <speciesReference species="caldariellaquinone" stoichiometry="0.6"/> <speciesReference species="sulfolobusquinone" stoichiometry="0.4"/> </listOfReactants> <listOfProducts> <speciesReference species="representative_quinone" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="8.91028e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_glycogen_trehalose_2.7.7.9_GLUC1PURIDYLTRANS-RXN" name="carb_glycogen_trehalose_2.7.7.9_GLUC1PURIDYLTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="alpha-D-glucose_1-phosphate" stoichiometry="1.0"/> <speciesReference species="UTP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0698897831"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0813</html:p> </notes> </reaction> <reaction id="carb_glycogen_2.7.7.27_GLUC1PADENYLTRANS-RXN" name="carb_glycogen_2.7.7.27_GLUC1PADENYLTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="alpha-D-glucose_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1782</html:p> </notes> </reaction> <reaction id="carb_glycogen_2.4.1.21_GLYCOGENSYN-RXN" name="carb_glycogen_2.4.1.21_GLYCOGENSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ADP-alpha-D-glucose" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="2.0"/> <speciesReference species="glycogen" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0987</html:p> </notes> </reaction> <reaction id="carb_glycogen_2.4.1.21_glycogensynthase-upd" name="carb_glycogen_2.4.1.21_glycogensynthase-upd" reversible="false"> <listOfReactants> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UDP" stoichiometry="2.0"/> <speciesReference species="glycogen" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0343954223"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0987</html:p> </notes> </reaction> <reaction id="carb_trehalose_3.2.1.68_RXN-4301" name="carb_trehalose_3.2.1.68_RXN-4301" reversible="true"> <listOfReactants> <speciesReference species="glycogen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="maltodextrin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0016313396"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_trehalose_5.4.99.15_maltooligosyl-trahalose-synthase" name="carb_trehalose_5.4.99.15_maltooligosyl-trahalose-synthase" reversible="true"> <listOfReactants> <speciesReference species="maltodextrin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="maltooligosyl-trehalose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0016313396"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2095</html:p> </notes> </reaction> <reaction id="carb_trehalose_3.2.1.141_3.2.1.141-RXN" name="carb_trehalose_3.2.1.141_3.2.1.141-RXN" reversible="false"> <listOfReactants> <speciesReference species="maltooligosyl-trehalose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="trehalose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0016313396"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2093</html:p> </notes> </reaction> <reaction id="carb_galactose_5.1.3.2_UDPGLUCEPIM-RXN" name="carb_galactose_5.1.3.2_UDPGLUCEPIM-RXN" reversible="true"> <listOfReactants> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UDP-alpha-D-galactose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0005494693"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0166, SSO0809</html:p> </notes> </reaction> <reaction id="carb_gdp-mannose_5.4.2.8_PHOSMANMUT-RXN" name="carb_gdp-mannose_5.4.2.8_PHOSMANMUT-RXN" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-mannose_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-mannose_6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0207</html:p> </notes> </reaction> <reaction id="carb_gdp-mannose_2.7.7.13_2.7.7.13-RXN" name="carb_gdp-mannose_2.7.7.13_2.7.7.13-RXN" reversible="true"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="alpha-D-mannose_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="GDP-alpha-D-mannose" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0317</html:p> </notes> </reaction> <reaction id="carb_rhamnose_2.7.7.24_DTDPGLUCOSEPP-RXN" name="carb_rhamnose_2.7.7.24_DTDPGLUCOSEPP-RXN" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-glucose_1-phosphate" stoichiometry="1.0"/> <speciesReference species="dTTP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dTDP-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0831, SSO1782</html:p> </notes> </reaction> <reaction id="carb_rhamnose_4.2.1.46_DTDPGLUCDEHYDRAT-RXN" name="carb_rhamnose_4.2.1.46_DTDPGLUCDEHYDRAT-RXN" reversible="true"> <listOfReactants> <speciesReference species="dTDP-alpha-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dTDP-4-dehydro-6-deoxy-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0830, SSO1734, SSO1781</html:p> </notes> </reaction> <reaction id="carb_rhamnose_5.1.3.13_DTDPDEHYDRHAMEPIM-RXN" name="carb_rhamnose_5.1.3.13_DTDPDEHYDRHAMEPIM-RXN" reversible="true"> <listOfReactants> <speciesReference species="dTDP-4-dehydro-6-deoxy-alpha-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dTDP-4-dehydro-6-deoxy-beta-L-mannose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0833, SSO1923</html:p> </notes> </reaction> <reaction id="carb_rhamnose_1.1.1.133_BS187148" name="carb_rhamnose_1.1.1.133_BS187148" reversible="false"> <listOfReactants> <speciesReference species="dTDP-4-dehydro-6-deoxy-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dTDP-alpha-L-rhamnose" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0832, SSO1783, SSO2161</html:p> </notes> </reaction> <reaction id="carb_rhamnose_1.1.1.133_DTDPDEHYRHAMREDUCT-RXN" name="carb_rhamnose_1.1.1.133_DTDPDEHYRHAMREDUCT-RXN" reversible="false"> <listOfReactants> <speciesReference species="dTDP-4-dehydro-6-deoxy-beta-L-mannose" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dTDP-alpha-L-rhamnose" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0832, SSO1783, SSO2161</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_6.3.4.15_BIOTINLIG-RXN" name="carb_carbon-fixation_6.3.4.15_BIOTINLIG-RXN" reversible="false"> <listOfReactants> <speciesReference species="|BCCP-monomers|" stoichiometry="1.0"/> <speciesReference species="biotin" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="|BCCP-biotin-monomers|" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0662</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_6.3.4.14_BIOTIN-CARBOXYL-RXN" name="carb_carbon-fixation_6.3.4.14_BIOTIN-CARBOXYL-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="hydrogen_carbonate" stoichiometry="1.0"/> <speciesReference species="|BCCP-dimers|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|Carboxybiotin-BCCP|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2466, SSO2786</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_6.4.1.2_RXN0-5055" name="carb_carbon-fixation_6.4.1.2_RXN0-5055" reversible="false"> <listOfReactants> <speciesReference species="|Carboxybiotin-BCCP|" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="|BCCP-dimers|" stoichiometry="1.0"/> <speciesReference species="malonyl-CoA" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2466</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_1.2.1.18_1.2.1.27_RXN-8963" name="carb_carbon-fixation_1.2.1.18_1.2.1.27_RXN-8963" reversible="true"> <listOfReactants> <speciesReference species="malonate_semialdehyde" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="malonyl-CoA" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1218</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_1.1.1.298_RXN-8974" name="carb_carbon-fixation_1.1.1.298_RXN-8974" reversible="false"> <listOfReactants> <speciesReference species="malonate_semialdehyde" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-hydroxypropionate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0647</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_6.2.1.36_RXN-9086" name="carb_carbon-fixation_6.2.1.36_RXN-9086" reversible="false"> <listOfReactants> <speciesReference species="3-hydroxypropionate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-hydroxypropanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3203</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_4.2.1.116_RXN-6383" name="carb_carbon-fixation_4.2.1.116_RXN-6383" reversible="true"> <listOfReactants> <speciesReference species="3-hydroxypropanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acrylyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0654</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_1.3.1.84_RXN-9087" name="carb_carbon-fixation_1.3.1.84_RXN-9087" reversible="true"> <listOfReactants> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="propanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acrylyl-CoA" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2536</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_6.4.1.3_PROPIONYL-COA-CARBOXY-RXN" name="carb_carbon-fixation_6.4.1.3_PROPIONYL-COA-CARBOXY-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="hydrogen_carbonate" stoichiometry="1.0"/> <speciesReference species="propanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="(S)-methylmalonyl-CoA" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440295173"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2463, SSO2464</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_5.1.99.1_METHYLMALONYL-COA-EPIM-RXN" name="carb_carbon-fixation_5.1.99.1_METHYLMALONYL-COA-EPIM-RXN" reversible="true"> <listOfReactants> <speciesReference species="(S)-methylmalonyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(R)-methylmalonyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440295173"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2426</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_5.4.99.2_Methylmalonyl-CoA-mutase" name="carb_carbon-fixation_5.4.99.2_Methylmalonyl-CoA-mutase" reversible="true"> <listOfReactants> <speciesReference species="(R)-methylmalonyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="succinyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440295173"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2266, SSO2425</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_1.2.1.76_RXN-8891" name="carb_carbon-fixation_1.2.1.76_RXN-8891" reversible="true"> <listOfReactants> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="succinate_semialdehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="succinyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2178</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_1.1.1.61_4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN" name="carb_carbon-fixation_1.1.1.61_4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="4-hydroxybutyrate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="succinate_semialdehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2490</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_6.2.1.-_RXN-9092" name="carb_carbon-fixation_6.2.1.-_RXN-9092" reversible="false"> <listOfReactants> <speciesReference species="4-hydroxybutyrate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-hydroxybutanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2808</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_4.2.1.120_RXN-8890" name="carb_carbon-fixation_4.2.1.120_RXN-8890" reversible="true"> <listOfReactants> <speciesReference species="4-hydroxybutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="vinylacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2738</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_5.3.3.3_VINYLACETYL-COA-DELTA-ISOMERASE-RXN" name="carb_carbon-fixation_5.3.3.3_VINYLACETYL-COA-DELTA-ISOMERASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="vinylacetyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="crotonyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2738</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_4.2.1.17_BS402361" name="carb_carbon-fixation_4.2.1.17_BS402361" reversible="true"> <listOfReactants> <speciesReference species="4-hydroxybutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="crotonyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0050, SSO0654, SSO1311, SSO2017, SSO2514, SSO2535, SSO2623, SSO2624</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_4.2.1.55_3-HYDROXBUTYRYL-COA-DEHYDRATASE-RXN" name="carb_carbon-fixation_4.2.1.55_3-HYDROXBUTYRYL-COA-DEHYDRATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="(R)-3-hydroxybutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="crotonyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1154</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_4.2.1.55_RXN-11667" name="carb_carbon-fixation_4.2.1.55_RXN-11667" reversible="true"> <listOfReactants> <speciesReference species="(S)-3-hydroxybutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="crotonyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1154</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_1.1.1.157_3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN" name="carb_carbon-fixation_1.1.1.157_3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="(S)-3-hydroxybutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetoacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0647, SSO2871, SSO2996</html:p> </notes> </reaction> <reaction id="carb_carbon-fixation_2.3.1.9_ACETYL-COA-ACETYLTRANSFER-RXN" name="carb_carbon-fixation_2.3.1.9_ACETYL-COA-ACETYLTRANSFER-RXN" reversible="true"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetoacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0418784421"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2061, SSO2062, SSO2377, SSO2496, SSO2625, SSO2874</html:p> </notes> </reaction> <reaction id="aa_glu_1.4.1.3_GLUTAMATE-DEHYDROGENASE-NADP+-RXN_NADP" name="aa_glu_1.4.1.3_GLUTAMATE-DEHYDROGENASE-NADP+-RXN_NADP" reversible="true"> <listOfReactants> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.5148577669"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1907</html:p> </notes> </reaction> <reaction id="aa_gln_6.3.1.2_GLUTAMINESYN-RXN" name="aa_gln_6.3.1.2_GLUTAMINESYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0862694255"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0366, SSO2440, SSO2554</html:p> </notes> </reaction> <reaction id="aa_glu_salvage_3.5.2.9_5-OXOPROLINASE-ATP-HYDROLYSING-RXN" name="aa_glu_salvage_3.5.2.9_5-OXOPROLINASE-ATP-HYDROLYSING-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> <speciesReference species="5-oxoproline" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2010</html:p> </notes> </reaction> <reaction id="aa_arg_orn_arg_2.3.1.1_N-ACETYLTRANSFER-RXN" name="aa_arg_orn_arg_2.3.1.1_N-ACETYLTRANSFER-RXN" reversible="false"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-acetyl-L-glutamate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0315458573"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_arg_orn_2.7.2.8_ACETYLGLUTKIN-RXN" name="aa_arg_orn_2.7.2.8_ACETYLGLUTKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="N-acetyl-L-glutamate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="N-acetylglutamyl-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0315458573"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0156</html:p> </notes> </reaction> <reaction id="aa_arg_orn_1.2.1.38_N-ACETYLGLUTPREDUCT-RXN" name="aa_arg_orn_1.2.1.38_N-ACETYLGLUTPREDUCT-RXN" reversible="true"> <listOfReactants> <speciesReference species="N-acetyl-L-glutamate_5-semialdehyde" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-acetylglutamyl-phosphate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0315458573"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0155</html:p> </notes> </reaction> <reaction id="aa_arg_orn_2.6.1.11_ACETYLORNTRANSAM-RXN" name="aa_arg_orn_2.6.1.11_ACETYLORNTRANSAM-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="N-acetyl-L-ornithine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-acetyl-L-glutamate_5-semialdehyde" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0315458573"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0160</html:p> </notes> </reaction> <reaction id="aa_arg_orn_3.5.1.16_ACETYLORNDEACET-RXN" name="aa_arg_orn_3.5.1.16_ACETYLORNDEACET-RXN" reversible="false"> <listOfReactants> <speciesReference species="N-acetyl-L-ornithine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="L-ornithine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0315458573"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0790</html:p> </notes> </reaction> <reaction id="aa_ile_4.3.1.19_BS141657" name="aa_ile_4.3.1.19_BS141657" reversible="true"> <listOfReactants> <speciesReference species="L-homoserine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-oxobutanoate" stoichiometry="1.0"/> <speciesReference species="ammonia" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0344318895"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0248</html:p> </notes> </reaction> <reaction id="aa_ile_2.2.1.6_ACETOOHBUTSYN-RXN" name="aa_ile_2.2.1.6_ACETOOHBUTSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-oxobutanoate" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-aceto-2-hydroxy-butanoate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0344318895"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0579, SSO3210</html:p> </notes> </reaction> <reaction id="aa_ile_1.1.1.86_ACETOOHBUTREDUCTOISOM-RXN" name="aa_ile_1.1.1.86_ACETOOHBUTREDUCTOISOM-RXN" reversible="true"> <listOfReactants> <speciesReference species="2,3-dihydroxy-3-methylvalerate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-aceto-2-hydroxy-butanoate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0344318895"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0576, SSO1322, SSO1942</html:p> </notes> </reaction> <reaction id="aa_ile_4.2.1.9_DIHYDROXYMETVALDEHYDRAT-RXN" name="aa_ile_4.2.1.9_DIHYDROXYMETVALDEHYDRAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="2,3-dihydroxy-3-methylvalerate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-3-methyl-2-oxopentanoate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0344318895"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3107</html:p> </notes> </reaction> <reaction id="aa_ile_carb_degra-ile_2.6.1.42_BRANCHED-CHAINAMINOTRANSFERILEU-RXN" name="aa_ile_carb_degra-ile_2.6.1.42_BRANCHED-CHAINAMINOTRANSFERILEU-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-isoleucine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-3-methyl-2-oxopentanoate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0344318895"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_val_leu_2.2.1.6_ACETOLACTSYN-RXN" name="aa_val_leu_2.2.1.6_ACETOLACTSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="pyruvate" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-2-acetolactate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.7085711877"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0579, SSO3210</html:p> </notes> </reaction> <reaction id="aa_val_leu_1.1.1.86_ACETOLACTREDUCTOISOM-RXN" name="aa_val_leu_1.1.1.86_ACETOLACTREDUCTOISOM-RXN" reversible="true"> <listOfReactants> <speciesReference species="(R)-2,3-dihydroxy-3-methylbutanoate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-2-acetolactate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.7085711877"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0576, SSO1322, SSO1942</html:p> </notes> </reaction> <reaction id="aa_val_leu_4.2.1.9_DIHYDROXYISOVALDEHYDRAT-RXN" name="aa_val_leu_4.2.1.9_DIHYDROXYISOVALDEHYDRAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="(R)-2,3-dihydroxy-3-methylbutanoate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-oxoisovalerate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.7085711877"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3107</html:p> </notes> </reaction> <reaction id="aa_val_carb_degra-val_2.6.1.42_BRANCHED-CHAINAMINOTRANSFERVAL-RXN" name="aa_val_carb_degra-val_2.6.1.42_BRANCHED-CHAINAMINOTRANSFERVAL-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-valine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-oxoisovalerate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0269939462"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_leu_2.3.3.13_2-ISOPROPYLMALATESYN-RXN" name="aa_leu_2.3.3.13_2-ISOPROPYLMALATESYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-oxoisovalerate" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(2S)-2-isopropylmalate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0375359611"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2407</html:p> </notes> </reaction> <reaction id="aa_leu_4.2.1.33_RXN-13163" name="aa_leu_4.2.1.33_RXN-13163" reversible="true"> <listOfReactants> <speciesReference species="(2R,3S)-3-isopropylmalate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(2S)-2-isopropylmalate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0375359611"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2470, SSO2471</html:p> </notes> </reaction> <reaction id="aa_leu_4.2.1.33_BR413" name="aa_leu_4.2.1.33_BR413" reversible="true"> <listOfReactants> <speciesReference species="(2R,3S)-3-isopropylmalate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-isopropylmaleate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2470, SSO2471</html:p> </notes> </reaction> <reaction id="aa_leu_1.1.1.85_RXN-13158" name="aa_leu_1.1.1.85_RXN-13158" reversible="false"> <listOfReactants> <speciesReference species="(2R,3S)-3-isopropylmalate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="4-methyl-2-oxopentanoate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0375359611"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0723</html:p> </notes> </reaction> <reaction id="aa_leu_carb_degra-leu_2.6.1.42_BRANCHED-CHAINAMINOTRANSFERLEU-RXN" name="aa_leu_carb_degra-leu_2.6.1.42_BRANCHED-CHAINAMINOTRANSFERLEU-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-leucine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-methyl-2-oxopentanoate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0375359611"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carbam_aa_arg_oro_6.3.5.5_CARBPSYN-RXN" name="carbam_aa_arg_oro_6.3.5.5_CARBPSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="2.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="hydrogen_carbonate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="2.0"/> <speciesReference species="carbamoyl-phosphate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0238523332"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0640, SSO0641</html:p> </notes> </reaction> <reaction id="aa_arg_ureacyc_2.1.3.3_ORNCARBAMTRANSFER-RXN" name="aa_arg_ureacyc_2.1.3.3_ORNCARBAMTRANSFER-RXN" reversible="true"> <listOfReactants> <speciesReference species="carbamoyl-phosphate" stoichiometry="1.0"/> <speciesReference species="L-ornithine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-citrulline" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0177233488"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0871</html:p> </notes> </reaction> <reaction id="aa_arg_ureacyc_6.3.4.5_ARGSUCCINSYN-RXN" name="aa_arg_ureacyc_6.3.4.5_ARGSUCCINSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> <speciesReference species="L-citrulline" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="L-arginino-succinate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0177233488"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0638</html:p> </notes> </reaction> <reaction id="aa_arg_ureacyc_4.3.2.1_ARGSUCCINLYA-RXN" name="aa_arg_ureacyc_4.3.2.1_ARGSUCCINLYA-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-arginino-succinate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-arginine" stoichiometry="1.0"/> <speciesReference species="fumarate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0177233488"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0639</html:p> </notes> </reaction> <reaction id="aa_pro_carb_degra-arg_1.5.1.2_PYRROLINECARBREDUCT-RXN_NAD" name="aa_pro_carb_degra-arg_1.5.1.2_PYRROLINECARBREDUCT-RXN_NAD" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="(S)-1-pyrroline-5-carboxylate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-proline" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0495</html:p> </notes> </reaction> <reaction id="aa_pro_carb_degra-arg_1.5.1.2_PYRROLINECARBREDUCT-RXN_NADP" name="aa_pro_carb_degra-arg_1.5.1.2_PYRROLINECARBREDUCT-RXN_NADP" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="(S)-1-pyrroline-5-carboxylate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-proline" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0495</html:p> </notes> </reaction> <reaction id="aa_asp_2.6.1.1_ASPAMINOTRANS-RXN" name="aa_asp_2.6.1.1_ASPAMINOTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="oxaloacetate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.1660300324"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0897, SSO1177, SSO3245</html:p> </notes> </reaction> <reaction id="aa_ala_2.6.1.2_ALANINE-AMINOTRANSFERASE-RXN" name="aa_ala_2.6.1.2_ALANINE-AMINOTRANSFERASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-alanine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0203657437"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_hcys_met_2.5.1.49_ACETYLHOMOSER-CYS-RXN" name="aa_hcys_met_2.5.1.49_ACETYLHOMOSER-CYS-RXN" reversible="true"> <listOfReactants> <speciesReference species="O-acetyl-L-homoserine" stoichiometry="1.0"/> <speciesReference species="hydrogen_sulfide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="L-homocysteine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="5.34617e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_hser_hcys_thr_met_2.7.2.4_ASPARTATEKIN-RXN" name="aa_hser_hcys_thr_met_2.7.2.4_ASPARTATEKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="L-aspartyl-4-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0883167627"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0876</html:p> </notes> </reaction> <reaction id="aa_hser_hcys_thr_met_1.2.1.11_ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN" name="aa_hser_hcys_thr_met_1.2.1.11_ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-aspartate-semialdehyde" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-aspartyl-4-phosphate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0883167627"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0874, SSO2178</html:p> </notes> </reaction> <reaction id="aa_hser_hcys_thr_met_1.1.1.3_HOMOSERDEHYDROG-RXN_NAD" name="aa_hser_hcys_thr_met_1.1.1.3_HOMOSERDEHYDROG-RXN_NAD" reversible="false"> <listOfReactants> <speciesReference species="L-aspartate-semialdehyde" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-homoserine" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0600824712"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0657</html:p> </notes> </reaction> <reaction id="aa_hser_hcys_thr_met_1.1.1.3_HOMOSERDEHYDROG-RXN_NADP" name="aa_hser_hcys_thr_met_1.1.1.3_HOMOSERDEHYDROG-RXN_NADP" reversible="false"> <listOfReactants> <speciesReference species="L-aspartate-semialdehyde" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-homoserine" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0657</html:p> </notes> </reaction> <reaction id="aa_thr_met_2.7.1.39_HOMOSERKIN-RXN" name="aa_thr_met_2.7.1.39_HOMOSERKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-homoserine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="O-phospho-L-homoserine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0256505817"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2367</html:p> </notes> </reaction> <reaction id="aa_thr_4.2.3.1_THRESYN-RXN" name="aa_thr_4.2.3.1_THRESYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="O-phospho-L-homoserine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="L-threonine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0175777896"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0493, SSO0878</html:p> </notes> </reaction> <reaction id="aa_gly_2.1.2.1_GLYOHMETRANS-RXN" name="aa_gly_2.1.2.1_GLYOHMETRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-serine" stoichiometry="1.0"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glycine" stoichiometry="1.0"/> <speciesReference species="5,10-methylenetetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0326408085"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0530</html:p> </notes> </reaction> <reaction id="aa_ser_gly_cys_sec_trp_1.1.1.95_PGLYCDEHYDROG-RXN" name="aa_ser_gly_cys_sec_trp_1.1.1.95_PGLYCDEHYDROG-RXN" reversible="true"> <listOfReactants> <speciesReference species="3-phospho-D-glycerate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-phospho-hydroxypyruvate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0630463139"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0905</html:p> </notes> </reaction> <reaction id="aa_ser_gly_cys_sec_trp_2.6.1.52_PSERTRANSAM-RXN" name="aa_ser_gly_cys_sec_trp_2.6.1.52_PSERTRANSAM-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="3-phospho-L-serine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-phospho-hydroxypyruvate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0630463139"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_ser_gly_cys_sec_trp_3.1.3.3_RXN0-5114" name="aa_ser_gly_cys_sec_trp_3.1.3.3_RXN0-5114" reversible="false"> <listOfReactants> <speciesReference species="3-phospho-L-serine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="L-serine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0630463139"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1605</html:p> </notes> </reaction> <reaction id="aa_cys_2.3.1.30_SERINE-O-ACETTRAN-RXN" name="aa_cys_2.3.1.30_SERINE-O-ACETTRAN-RXN" reversible="true"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="L-serine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="O-acetyl-L-serine" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0103333409"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0372</html:p> </notes> </reaction> <reaction id="aa_cys_2.5.1.47_ACSERLY-RXN" name="aa_cys_2.5.1.47_ACSERLY-RXN" reversible="true"> <listOfReactants> <speciesReference species="O-acetyl-L-serine" stoichiometry="1.0"/> <speciesReference species="hydrogen_sulfide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="L-cysteine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0103333409"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0360</html:p> </notes> </reaction> <reaction id="aa_his_2.4.2.17_ATPPHOSPHORIBOSYLTRANS-RXN" name="aa_his_2.4.2.17_ATPPHOSPHORIBOSYLTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphoribosyl-ATP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0593</html:p> </notes> </reaction> <reaction id="aa_his_3.6.1.31_HISTPRATPHYD-RXN" name="aa_his_3.6.1.31_HISTPRATPHYD-RXN" reversible="false"> <listOfReactants> <speciesReference species="phosphoribosyl-ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="1-(5-phospho-D-ribosyl)-AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO6223</html:p> </notes> </reaction> <reaction id="aa_his_3.5.4.19_HISTCYCLOHYD-RXN" name="aa_his_3.5.4.19_HISTCYCLOHYD-RXN" reversible="false"> <listOfReactants> <speciesReference species="1-(5-phospho-D-ribosyl)-AMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO6227</html:p> </notes> </reaction> <reaction id="aa_his_5.3.1.16_PRIBFAICARPISOM-RXN" name="aa_his_5.3.1.16_PRIBFAICARPISOM-RXN" reversible="false"> <listOfReactants> <speciesReference species="1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphoribulosylformimino-AICAR-P" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0594</html:p> </notes> </reaction> <reaction id="aa_his_2.4.2.-_GLUTAMIDOTRANS-RXN" name="aa_his_2.4.2.-_GLUTAMIDOTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="phosphoribulosylformimino-AICAR-P" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="aminoimidazole_carboxamide_ribonucleotide" stoichiometry="1.0"/> <speciesReference species="D-erythro-imidazole-glycerol-phosphate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0600</html:p> </notes> </reaction> <reaction id="aa_his_4.2.1.19_IMIDPHOSDEHYD-RXN" name="aa_his_4.2.1.19_IMIDPHOSDEHYD-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-erythro-imidazole-glycerol-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="imidazole_acetol-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0596</html:p> </notes> </reaction> <reaction id="aa_his_2.6.1.9_HISTAMINOTRANS-RXN" name="aa_his_2.6.1.9_HISTAMINOTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="imidazole_acetol-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-histidinol-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0448, SSO0592</html:p> </notes> </reaction> <reaction id="aa_his_3.1.3.15_HISTIDPHOS-RXN" name="aa_his_3.1.3.15_HISTIDPHOS-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-histidinol-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="histidinol" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0596</html:p> </notes> </reaction> <reaction id="aa_his_1.1.1.23_BS371011" name="aa_his_1.1.1.23_BS371011" reversible="false"> <listOfReactants> <speciesReference species="histidinol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="histidinal" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0599</html:p> </notes> </reaction> <reaction id="aa_his_1.1.1.23_BS187855" name="aa_his_1.1.1.23_BS187855" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="histidinal" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-histidine" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.004689368"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0599</html:p> </notes> </reaction> <reaction id="aa_phe_tyr_trp_shiki_2.5.1.54_DAHPSYN-RXN" name="aa_phe_tyr_trp_shiki_2.5.1.54_DAHPSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-erythrose-4-phosphate" stoichiometry="1.0"/> <speciesReference species="phosphoenolpyruvate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-deoxy-D-arabino-heptulosonate-7-phosphate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0374450332"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0304</html:p> </notes> </reaction> <reaction id="aa_phe_tyr_trp_shiki_4.2.3.4_3-DEHYDROQUINATE-SYNTHASE-RXN" name="aa_phe_tyr_trp_shiki_4.2.3.4_3-DEHYDROQUINATE-SYNTHASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="3-deoxy-D-arabino-heptulosonate-7-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-dehydroquinate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0374450332"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0305</html:p> </notes> </reaction> <reaction id="aa_phe_tyr_trp_shiki_4.2.1.10_3-DEHYDROQUINATE-DEHYDRATASE-RXN" name="aa_phe_tyr_trp_shiki_4.2.1.10_3-DEHYDROQUINATE-DEHYDRATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="3-dehydroquinate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-dehydroshikimate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0374450332"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0311</html:p> </notes> </reaction> <reaction id="aa_phe_tyr_trp_shiki_1.1.1.25_RXN-7968_NADP" name="aa_phe_tyr_trp_shiki_1.1.1.25_RXN-7968_NADP" reversible="false"> <listOfReactants> <speciesReference species="3-dehydroshikimate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="shikimate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0374450332"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0306</html:p> </notes> </reaction> <reaction id="aa_phe_tyr_trp_shiki_2.7.1.71_SHIKIMATE-KINASE-RXN" name="aa_phe_tyr_trp_shiki_2.7.1.71_SHIKIMATE-KINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="shikimate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="shikimate-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0374414044"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0308</html:p> </notes> </reaction> <reaction id="aa_phe_tyr_trp_shiki_2.5.1.19_2.5.1.19-RXN" name="aa_phe_tyr_trp_shiki_2.5.1.19_2.5.1.19-RXN" reversible="true"> <listOfReactants> <speciesReference species="phosphoenolpyruvate" stoichiometry="1.0"/> <speciesReference species="shikimate-3-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-enolpyruvyl-shikimate-3-phosphate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0374414044"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0309</html:p> </notes> </reaction> <reaction id="aa_phe_tyr_trp_shiki_4.2.3.5_CHORISMATE-SYNTHASE-RXN" name="aa_phe_tyr_trp_shiki_4.2.3.5_CHORISMATE-SYNTHASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-enolpyruvyl-shikimate-3-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="chorismate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0374414044"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0307</html:p> </notes> </reaction> <reaction id="aa_trp_4.1.3.27_ANTHRANSYN-RXN" name="aa_trp_4.1.3.27_ANTHRANSYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="chorismate" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="anthranilate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0038023683"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0893, SSO0894</html:p> </notes> </reaction> <reaction id="aa_trp_2.4.2.18_PRTRANS-RXN" name="aa_trp_2.4.2.18_PRTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="anthranilate" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-(5'-phosphoribosyl)-anthranilate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0038023683"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0890</html:p> </notes> </reaction> <reaction id="aa_trp_5.3.1.24_PRAISOM-RXN" name="aa_trp_5.3.1.24_PRAISOM-RXN" reversible="false"> <listOfReactants> <speciesReference species="N-(5'-phosphoribosyl)-anthranilate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="1-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0038023683"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0892</html:p> </notes> </reaction> <reaction id="aa_trp_4.1.1.48_IGPSYN-RXN" name="aa_trp_4.1.1.48_IGPSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="1-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="(1S,2R)-1-C-(indol-3-yl)glycerol_3-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0038023683"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0895</html:p> </notes> </reaction> <reaction id="aa_trp_4.2.1.20_RXN0-2381" name="aa_trp_4.2.1.20_RXN0-2381" reversible="true"> <listOfReactants> <speciesReference species="(1S,2R)-1-C-(indol-3-yl)glycerol_3-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="indole" stoichiometry="1.0"/> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0038023683"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0888, SSO0889, SSO1145</html:p> </notes> </reaction> <reaction id="aa_trp_4.2.1.20_RXN0-2382" name="aa_trp_4.2.1.20_RXN0-2382" reversible="false"> <listOfReactants> <speciesReference species="L-serine" stoichiometry="1.0"/> <speciesReference species="indole" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-tryptophan" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0038023683"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0888, SSO0889, SSO1145</html:p> </notes> </reaction> <reaction id="aa_phe_5.4.99.5_CHORISMATEMUT-RXN" name="aa_phe_5.4.99.5_CHORISMATEMUT-RXN" reversible="true"> <listOfReactants> <speciesReference species="chorismate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="prephenate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0336390361"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0246</html:p> </notes> </reaction> <reaction id="aa_phe_4.2.1.51_PREPHENATEDEHYDRAT-RXN" name="aa_phe_4.2.1.51_PREPHENATEDEHYDRAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="prephenate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="keto-phenylpyruvate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0160697361"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0246</html:p> </notes> </reaction> <reaction id="aa_phe_2.6.1.1_PHEAMINOTRANS-RXN" name="aa_phe_2.6.1.1_PHEAMINOTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="keto-phenylpyruvate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-phenylalanine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0173152432"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0897, SSO1177, SSO3245</html:p> </notes> </reaction> <reaction id="aa_tyr_1.3.1.12_PREPHENATEDEHYDROG-RXN" name="aa_tyr_1.3.1.12_PREPHENATEDEHYDROG-RXN" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="prephenate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="4-hydroxyphenylpyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0175693"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0302</html:p> </notes> </reaction> <reaction id="aa_tyr_2.6.1.5_TYRAMINOTRANS-RXN" name="aa_tyr_2.6.1.5_TYRAMINOTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-tyrosine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="4-hydroxyphenylpyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0174801972"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="tRNA_aa_asn_6.1.1.-_6.1.1.23_RXN490-3616" name="tRNA_aa_asn_6.1.1.-_6.1.1.23_RXN490-3616" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> <speciesReference species="|ASN-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|L-aspartyl-tRNAAsn|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter 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xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0180385979"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_asn_3.1.1.29_RXN-12460" name="aa_asn_3.1.1.29_RXN-12460" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="|Charged-ASN-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-asparagine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="|ASN-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0180385979"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0175</html:p> </notes> </reaction> <reaction id="aa_lys_2.3.3.14_HOMOCITRATE-SYNTHASE-RXN" name="aa_lys_2.3.3.14_HOMOCITRATE-SYNTHASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="(R)-homocitrate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0977</html:p> </notes> </reaction> <reaction id="aa_lys_4.3.3.7_DIHYDRODIPICSYN-RXN" name="aa_lys_4.3.3.7_DIHYDRODIPICSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="L-aspartate-semialdehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0278813984"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2274, SSO3035, SSO3072</html:p> </notes> </reaction> <reaction id="aa_lys_1.17.1.8_RXN-14014" name="aa_lys_1.17.1.8_RXN-14014" reversible="false"> <listOfReactants> <speciesReference species="(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="(S)-2,3,4,5-tetrahydrodipicolinate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0278813984"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_lys_2.3.1.89_2.3.1.89-RXN" name="aa_lys_2.3.1.89_2.3.1.89-RXN" reversible="false"> <listOfReactants> <speciesReference species="(S)-2,3,4,5-tetrahydrodipicolinate" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-2-acetamido-6-oxoheptanedioate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0278813984"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0372</html:p> </notes> </reaction> <reaction id="aa_lys_2.6.1.-_RXN-4822" name="aa_lys_2.6.1.-_RXN-4822" reversible="false"> <listOfReactants> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="L-2-acetamido-6-oxoheptanedioate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-acetyl-L,L-2,6-diaminopimelate" stoichiometry="1.0"/> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0278813984"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0104, SSO0160</html:p> </notes> </reaction> <reaction id="aa_lys_3.5.1.47_N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN" name="aa_lys_3.5.1.47_N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN" reversible="false"> <listOfReactants> <speciesReference 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</notes> </reaction> <reaction id="aa_met_2.5.1.48_O-SUCCHOMOSERLYASE-RXN" name="aa_met_2.5.1.48_O-SUCCHOMOSERLYASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-cysteine" stoichiometry="1.0"/> <speciesReference species="O-succinyl-L-homoserine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-cystathionine" stoichiometry="1.0"/> <speciesReference species="succinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2368</html:p> </notes> </reaction> <reaction id="aa_met_cof_sulfopterin_2.1.1.14_HOMOCYSMET-RXN" name="aa_met_cof_sulfopterin_2.1.1.14_HOMOCYSMET-RXN" reversible="true"> <listOfReactants> <speciesReference species="5-methyl-tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="L-homocysteine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0406</html:p> </notes> </reaction> <reaction id="aa_met_cof_sulfopterin_2.1.1.13_HOMOCYSMETB12-RXN" name="aa_met_cof_sulfopterin_2.1.1.13_HOMOCYSMETB12-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-methyl-tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="L-homocysteine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-methionine" stoichiometry="1.0"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0114198113"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2266</html:p> </notes> </reaction> <reaction id="aa_met_2.5.1.-_CYSPH-RXN" name="aa_met_2.5.1.-_CYSPH-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-cysteine" stoichiometry="1.0"/> <speciesReference species="O-phospho-L-homoserine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-cystathionine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0080727922"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0656</html:p> </notes> </reaction> <reaction id="aa_met_cof_sam_2.1.1.-_HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN" name="aa_met_cof_sam_2.1.1.-_HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-homocysteine" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0407, SSO0940, SSO2226</html:p> </notes> </reaction> <reaction id="aa_met_salvage_4.2.1.22_CYSTATHIONINE-BETA-SYNTHASE-RXN" name="aa_met_salvage_4.2.1.22_CYSTATHIONINE-BETA-SYNTHASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-homocysteine" stoichiometry="1.0"/> <speciesReference species="L-serine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-cystathionine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0080727922"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0493</html:p> </notes> </reaction> <reaction id="aa_met_salvage_5.3.1.23_5.3.1.23-RXN" name="aa_met_salvage_5.3.1.23_5.3.1.23-RXN" reversible="false"> <listOfReactants> <speciesReference species="S-methyl-5-thio-alpha-D-ribose_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-methylthioribulose-1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0012455072"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2978</html:p> </notes> </reaction> <reaction id="aa_met_salvage_4.2.1.109_R145-RXN" name="aa_met_salvage_4.2.1.109_R145-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-methylthioribulose-1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-(methylthio)-2,3-dioxopentyl_phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0012455072"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2978</html:p> </notes> </reaction> <reaction id="aa_met_salvage_3.1.3.77_3.1.3.77-RXN" name="aa_met_salvage_3.1.3.77_3.1.3.77-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-(methylthio)-2,3-dioxopentyl_phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="1,2-dihydroxy-5-(methylthio)pent-1-en-3-one" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0012455072"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0726</html:p> </notes> </reaction> <reaction id="aa_met_salvage_1.13.11.54_R147-RXN" name="aa_met_salvage_1.13.11.54_R147-RXN" reversible="false"> <listOfReactants> <speciesReference species="1,2-dihydroxy-5-(methylthio)pent-1-en-3-one" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-oxo-4-methylthiobutanoate" stoichiometry="1.0"/> <speciesReference species="formate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0012455072"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="aa_met_salvage_2.6.1.57_RXN-7708" name="aa_met_salvage_2.6.1.57_RXN-7708" reversible="true"> <listOfReactants> <speciesReference species="keto-phenylpyruvate" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-phenylalanine" stoichiometry="1.0"/> <speciesReference species="2-oxo-4-methylthiobutanoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0012455072"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0104</html:p> </notes> </reaction> <reaction id="cof_special-quinones_unknown01" name="cof_special-quinones_unknown01" reversible="true"> <listOfReactants> <speciesReference species="4-hydroxyphenylpyruvate" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="homogentisate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="8.91028e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_special-quinones_unknown02" name="cof_special-quinones_unknown02" reversible="true"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="homogentisate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="homogentisic_aldehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="8.91028e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_special-quinones_unknown03" name="cof_special-quinones_unknown03" reversible="true"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="homogentisic_aldehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="benzothiphen-4,7-quinone" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="8.91028e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_special-quinones_unknown04" name="cof_special-quinones_unknown04" reversible="true"> <listOfReactants> <speciesReference species="benzothiphen-4,7-quinone" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="benzothiophen-4,7-diol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="8.91028e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_special-quinones_unknown-prenyltransferase" name="cof_special-quinones_unknown-prenyltransferase" reversible="false"> <listOfReactants> <speciesReference species="benzothiophen-4,7-diol" stoichiometry="1.0"/> <speciesReference species="(2E,6E)-farnesyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="isopentenyl_diphosphate" stoichiometry="3.0"/> </listOfReactants> <listOfProducts> <speciesReference species="prenylated_1,4-benzothiophen-4,7-diol" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="4.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="8.91028e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_special-quinones_1.3.99.34_prenylated-benzothiophendiol-reduction" name="cof_special-quinones_1.3.99.34_prenylated-benzothiophendiol-reduction" reversible="false"> <listOfReactants> <speciesReference species="prenylated_1,4-benzothiophen-4,7-diol" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="6.0"/> <speciesReference species="H+" stoichiometry="6.0"/> </listOfReactants> <listOfProducts> <speciesReference species="reduced_prenylated_1,4-benzothiophen-4,7-diol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="6.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="8.91028e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2776</html:p> </notes> </reaction> <reaction id="cof_special-quinones_2.5.1.49_O-ACETYLHOMOSERINE-THIOL-LYASE-RXN" name="cof_special-quinones_2.5.1.49_O-ACETYLHOMOSERINE-THIOL-LYASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="O-acetyl-L-homoserine" stoichiometry="1.0"/> <speciesReference species="methanethiol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-5.34617e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_special-quinones_unknown05" name="cof_special-quinones_unknown05" reversible="true"> <listOfReactants> <speciesReference species="methanethiol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="2.0"/> <speciesReference species="reduced_prenylated_1,4-benzothiophen-4,7-diol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="caldariellaquinone" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="5.34617e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_special-quinones_unknown06" name="cof_special-quinones_unknown06" reversible="true"> <listOfReactants> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="2.0"/> <speciesReference species="reduced_prenylated_1,4-benzothiophen-4,7-diol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="sulfolobusquinone" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="NADH" stoichiometry="2.0"/> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="3.56411e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_plp_4.3.3.6_RXN-11322" name="cof_plp_4.3.3.6_RXN-11322" reversible="false"> <listOfReactants> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="D-ribose-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="pyridoxal_5'-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="3.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0570, SSO0571</html:p> </notes> </reaction> <reaction id="cof_biotin_2.6.1.62_DAPASYN-RXN" name="cof_biotin_2.6.1.62_DAPASYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> <speciesReference species="8-amino-7-oxononanoate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="7,8-diaminopelargonate" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-4-methylthio-2-oxobutanoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3211</html:p> </notes> </reaction> <reaction id="cof_biotin_2.8.1.6_BS360047" name="cof_biotin_2.8.1.6_BS360047" reversible="true"> <listOfReactants> <speciesReference species="dethiobiotin" stoichiometry="1.0"/> <speciesReference species="sulfur" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="biotin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1115</html:p> </notes> </reaction> <reaction id="cof_biotin_6.3.4.15_BS398826" name="cof_biotin_6.3.4.15_BS398826" reversible="false"> <listOfReactants> <speciesReference species="biotin" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="bio-5'-AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0662</html:p> </notes> </reaction> <reaction id="cof_flavin_3.5.4.29_RXN-10055" name="cof_flavin_3.5.4.29_RXN-10055" reversible="false"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="3.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004203545"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0399</html:p> </notes> </reaction> <reaction id="cof_flavin_3.5.1.102_RXN-10056" name="cof_flavin_3.5.1.102_RXN-10056" reversible="false"> <listOfReactants> <speciesReference species="2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one" stoichiometry="1.0"/> <speciesReference species="formate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004203545"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2832</html:p> </notes> </reaction> <reaction id="cof_flavin_1.1.1.302_RXN-10057" name="cof_flavin_1.1.1.302_RXN-10057" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2097</html:p> </notes> </reaction> <reaction id="cof_flavin_3.5.4.26_RIBOFLAVINSYNDEAM-RXN" name="cof_flavin_3.5.4.26_RIBOFLAVINSYNDEAM-RXN" reversible="false"> <listOfReactants> <speciesReference species="2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="5-amino-6-(5-phospho-D-ribosylamino)uracil" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004203545"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_flavin_1.1.1.193_RIBOFLAVINSYNREDUC-RXN" name="cof_flavin_1.1.1.193_RIBOFLAVINSYNREDUC-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-amino-6-(5-phospho-D-ribosylamino)uracil" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-amino-6-(5-phospho-D-ribitylamino)uracil" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004203545"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_flavin_3.1.3.-_riboflavinphosphatase" name="cof_flavin_3.1.3.-_riboflavinphosphatase" reversible="false"> <listOfReactants> <speciesReference species="5-amino-6-(5-phospho-D-ribitylamino)uracil" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-amino-6-(D-ribitylamino)uracil" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004203545"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1195</html:p> </notes> </reaction> <reaction id="cof_flavin_4.1.99.12_DIOHBUTANONEPSYN-RXN" name="cof_flavin_4.1.99.12_DIOHBUTANONEPSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-ribulose-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="1-deoxy-L-glycero-tetrulose_4-phosphate" stoichiometry="1.0"/> <speciesReference species="formate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.000840709"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0402</html:p> </notes> </reaction> <reaction id="cof_flavin_2.5.1.78_LUMAZINESYN-RXN" name="cof_flavin_2.5.1.78_LUMAZINESYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-amino-6-(D-ribitylamino)uracil" stoichiometry="1.0"/> <speciesReference species="1-deoxy-L-glycero-tetrulose_4-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="6,7-dimethyl-8-(1-D-ribityl)lumazine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.000840709"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0400</html:p> </notes> </reaction> <reaction id="cof_flavin_2.5.1.9_RIBOFLAVIN-SYN-RXN" name="cof_flavin_2.5.1.9_RIBOFLAVIN-SYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="6,7-dimethyl-8-(1-D-ribityl)lumazine" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-amino-6-(D-ribitylamino)uracil" stoichiometry="1.0"/> <speciesReference species="riboflavin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004203545"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0401</html:p> </notes> </reaction> <reaction id="cof_flavin_2.7.1.161_RXN-9296" name="cof_flavin_2.7.1.161_RXN-9296" reversible="false"> <listOfReactants> <speciesReference species="CTP" stoichiometry="1.0"/> <speciesReference species="riboflavin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CDP" stoichiometry="1.0"/> <speciesReference species="FMN" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004203545"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0955</html:p> </notes> </reaction> <reaction id="cof_flavin_2.7.7.2_FADSYN-RXN" name="cof_flavin_2.7.7.2_FADSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="FMN" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="FAD" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.127e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0954</html:p> </notes> </reaction> <reaction id="cof_thiamin_2.7.7.73_RXN-9789" name="cof_thiamin_2.7.7.73_RXN-9789" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="|Thi-S|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Adenylated-ThiS-Proteins|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0298</html:p> </notes> </reaction> <reaction id="cof_thiamin_4.1.99.19_RXN-11319" name="cof_thiamin_4.1.99.19_RXN-11319" reversible="false"> <listOfReactants> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> <speciesReference species="L-tyrosine" stoichiometry="1.0"/> <speciesReference species="representative_quinol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5'-deoxyadenosine" stoichiometry="1.0"/> <speciesReference species="4-methylphenol" stoichiometry="1.0"/> <speciesReference species="2-iminoacetate" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="representative_quinone" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_thiamin_unknown01" name="cof_thiamin_unknown01" reversible="true"> <listOfReactants> <speciesReference species="|ThiI_sulfur-carrier_protein|" stoichiometry="1.0"/> <speciesReference species="|Persulfurated-L-cysteine-desulfurases|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="|Persulfurated-ThiI_sulfur-carrier_protein|" stoichiometry="1.0"/> <speciesReference species="|L-Cysteine-Desulfurases|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_thiamin_unknown02" name="cof_thiamin_unknown02" reversible="true"> <listOfReactants> <speciesReference species="|Adenylated-ThiS-Proteins|" stoichiometry="1.0"/> <speciesReference species="|Persulfurated-ThiI_sulfur-carrier_protein|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="|Thiocarboxyadenylated-ThiS-Proteins|" stoichiometry="1.0"/> <speciesReference species="|ThiI_sulfur-carrier_protein|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_thiamin_2.8.1.10_THIAZOLSYN2-RXN" name="cof_thiamin_2.8.1.10_THIAZOLSYN2-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-iminoacetate" stoichiometry="1.0"/> <speciesReference species="1-deoxy-D-xylulose_5-phosphate" stoichiometry="1.0"/> <speciesReference species="|Thiocarboxyadenylated-ThiS-Proteins|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-[(2R,5Z)-(2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl_phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> <speciesReference species="|Thi-S|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0570</html:p> </notes> </reaction> <reaction id="cof_thiamin_2.5.1.3_RXN-12611" name="cof_thiamin_2.5.1.3_RXN-12611" reversible="false"> <listOfReactants> <speciesReference species="4-amino-2-methyl-5-diphosphomethylpyrimidine" stoichiometry="1.0"/> <speciesReference species="2-[(2R,5Z)-(2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl_phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="thiamin_phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2532</html:p> </notes> </reaction> <reaction id="cof_thiamin_4.1.99.17_PYRIMSYN1-RXN" name="cof_thiamin_4.1.99.17_PYRIMSYN1-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-amino-1-(5-phospho-D-ribosyl)imidazole" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-amino-2-methyl-5-phosphomethylpyrimidine" stoichiometry="1.0"/> <speciesReference species="carbon_monoxide" stoichiometry="1.0"/> <speciesReference species="5'-deoxyadenosine" stoichiometry="1.0"/> <speciesReference species="formate" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1324, SSO1941</html:p> </notes> </reaction> <reaction id="cof_thiamin_2.7.4.7_PYRIMSYN3-RXN" name="cof_thiamin_2.7.4.7_PYRIMSYN3-RXN" reversible="false"> <listOfReactants> <speciesReference species="4-amino-2-methyl-5-phosphomethylpyrimidine" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="4-amino-2-methyl-5-diphosphomethylpyrimidine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0002, SSO2393</html:p> </notes> </reaction> <reaction id="cof_thiamin_plp_2.2.1.7_DXS-RXN" name="cof_thiamin_plp_2.2.1.7_DXS-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="1-deoxy-D-xylulose_5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0299</html:p> </notes> </reaction> <reaction id="cof_thiamin_2.7.4.16_THI-P-KIN-RXN" name="cof_thiamin_2.7.4.16_THI-P-KIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="thiamin_phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="thiamin_diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0237</html:p> </notes> </reaction> <reaction id="cof_thiamin_3.1.3.2_RXNQT-4191" name="cof_thiamin_3.1.3.2_RXNQT-4191" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="thiamin_phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="thiamin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_tetrapyrrole_1.2.1.70_GLUTRNAREDUCT-RXN" name="cof_tetrapyrrole_1.2.1.70_GLUTRNAREDUCT-RXN" reversible="true"> <listOfReactants> <speciesReference species="glutamate-1-semialdehyde" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="|GLT-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="|Charged-GLT-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0033538202"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0180</html:p> </notes> </reaction> <reaction id="cof_tetrapyrrole_5.4.3.8_GSAAMINOTRANS-RXN" name="cof_tetrapyrrole_5.4.3.8_GSAAMINOTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="glutamate-1-semialdehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-amino-levulinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0033538202"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0182</html:p> </notes> </reaction> <reaction id="cof_tetrapyrrole_4.2.1.24_PORPHOBILSYNTH-RXN" name="cof_tetrapyrrole_4.2.1.24_PORPHOBILSYNTH-RXN" reversible="true"> <listOfReactants> <speciesReference species="5-amino-levulinate" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="porphobilinogen" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0016769101"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0181</html:p> </notes> </reaction> <reaction id="cof_tetrapyrrole_2.5.1.61_OHMETHYLBILANESYN-RXN" name="cof_tetrapyrrole_2.5.1.61_OHMETHYLBILANESYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="porphobilinogen" stoichiometry="4.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="4.0"/> <speciesReference species="hydroxymethylbilane" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0183</html:p> </notes> </reaction> <reaction id="cof_tetrapyrrole_4.2.1.75_UROGENIIISYN-RXN" name="cof_tetrapyrrole_4.2.1.75_UROGENIIISYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="hydroxymethylbilane" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="uroporphyrinogen-III" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0184</html:p> </notes> </reaction> <reaction id="cof_tetrapyrrole_tRNA_6.1.1.17_GLURS-RXN" name="cof_tetrapyrrole_tRNA_6.1.1.17_GLURS-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|GLT-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-GLT-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0033538202"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0093</html:p> </notes> </reaction> <reaction id="cof_cobalamin_2.1.1.107_RXN-13403" name="cof_cobalamin_2.1.1.107_RXN-13403" reversible="true"> <listOfReactants> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="2.0"/> <speciesReference species="uroporphyrinogen-III" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="2.0"/> <speciesReference species="precorrin-2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2435, SSO2908</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic_4.99.1.3_RXN-8759" name="cof_cobalamin-anaerobic_4.99.1.3_RXN-8759" reversible="false"> <listOfReactants> <speciesReference species="Co2+" stoichiometry="1.0"/> <speciesReference species="precorrin-2" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="cobalt-precorrin-2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0410</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic_2.1.1.151_RXN-8760" name="cof_cobalamin-anaerobic_2.1.1.151_RXN-8760" reversible="false"> <listOfReactants> <speciesReference species="cobalt-precorrin-2" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> <speciesReference species="cobalt-precorrin-3" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2301</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic_2.1.1.131_BS375288" name="cof_cobalamin-anaerobic_2.1.1.131_BS375288" reversible="true"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> <speciesReference species="cobalt-precorrin-3" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> <speciesReference species="cobalt-precorrin-4" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2306</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic-anaerobic_2.1.1.133_RXN-8762" name="cof_cobalamin-anaerobic-anaerobic_2.1.1.133_RXN-8762" reversible="false"> <listOfReactants> <speciesReference species="cobalt-precorrin-4" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> <speciesReference species="cobalt-precorrin-5A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2299</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic_3.7.1.12_RXN-8763" name="cof_cobalamin-anaerobic_3.7.1.12_RXN-8763" reversible="false"> <listOfReactants> <speciesReference species="cobalt-precorrin-5A" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetaldehyde" stoichiometry="1.0"/> <speciesReference species="cobalt-precorrin-5B" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2297</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic_2.1.1.195_RXN-8764" name="cof_cobalamin-anaerobic_2.1.1.195_RXN-8764" reversible="false"> <listOfReactants> <speciesReference species="cobalt-precorrin-5B" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> <speciesReference species="cobalt-precorrin-6A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2305</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic_1.3.1.54_RXN-8765" name="cof_cobalamin-anaerobic_1.3.1.54_RXN-8765" reversible="false"> <listOfReactants> <speciesReference species="cobalt-precorrin-6A" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cobalt-precorrin-6B" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_cobalamin-anaerobic_2.1.1.196_RXN-8766" name="cof_cobalamin-anaerobic_2.1.1.196_RXN-8766" reversible="false"> <listOfReactants> <speciesReference species="cobalt-precorrin-6B" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> <speciesReference species="cobalt-precorrin-7" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2303</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic_2.1.1.dg_RXN-8767" name="cof_cobalamin-anaerobic_2.1.1.dg_RXN-8767" reversible="false"> <listOfReactants> <speciesReference species="cobalt-precorrin-7" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="cobalt-precorrin-8x" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_cobalamin-anaerobic_5.4.1.2_RXN-8768" name="cof_cobalamin-anaerobic_5.4.1.2_RXN-8768" reversible="false"> <listOfReactants> <speciesReference species="cobalt-precorrin-8x" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cobyrinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2308</html:p> </notes> </reaction> <reaction id="cof_cobalamin-anaerobic_6.3.5.9_RXN-8769" name="cof_cobalamin-anaerobic_6.3.5.9_RXN-8769" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="2.0"/> <speciesReference species="cobyrinate" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="2.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="2.0"/> <speciesReference species="cob(II)yrinate_a,c-diamide" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="2.0"/> <speciesReference species="phosphate" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0404</html:p> </notes> </reaction> <reaction id="cof_cobalamin_1.16.8.1_R343-RXN" name="cof_cobalamin_1.16.8.1_R343-RXN" reversible="false"> <listOfReactants> <speciesReference species="cob(II)yrinate_a,c-diamide" stoichiometry="2.0"/> <speciesReference species="FMNH2" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cob(I)yrinate_a,c-diamide" stoichiometry="2.0"/> <speciesReference species="FMN" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0002096138"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_cobalamin_2.5.1.17_R344-RXN" name="cof_cobalamin_2.5.1.17_R344-RXN" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="cob(I)yrinate_a,c-diamide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenosyl-cobyrinate_a,c-diamide" stoichiometry="1.0"/> <speciesReference species="PPPi" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0588</html:p> </notes> </reaction> <reaction id="cof_cobalamin_6.3.5.10_R345-RXN" name="cof_cobalamin_6.3.5.10_R345-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="4.0"/> <speciesReference species="adenosyl-cobyrinate_a,c-diamide" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="4.0"/> <speciesReference species="H2O" stoichiometry="4.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="4.0"/> <speciesReference species="adenosyl-cobyrate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="4.0"/> <speciesReference species="phosphate" stoichiometry="4.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3233</html:p> </notes> </reaction> <reaction id="cof_aminoprop_cobalamin_2.7.1.177_RXN-8626" name="cof_aminoprop_cobalamin_2.7.1.177_RXN-8626" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-threonine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="L-threonine_O-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_aminoprop_cobalamin_4.1.1.81_4.1.1.81-RXN" name="cof_aminoprop_cobalamin_4.1.1.81_4.1.1.81-RXN" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-threonine_O-3-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="(R)-1-amino-2-propanol_O-2-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0897</html:p> </notes> </reaction> <reaction id="cof_cobalamin_6.3.1.10_RXN-6261" name="cof_cobalamin_6.3.1.10_RXN-6261" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="adenosyl-cobyrate" stoichiometry="1.0"/> <speciesReference species="(R)-1-amino-2-propanol_O-2-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenosyl-cobinamide_phosphate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3235</html:p> </notes> </reaction> <reaction id="cof_cobalamin_2.7.7.62_COBINPGUANYLYLTRANS-RXN" name="cof_cobalamin_2.7.7.62_COBINPGUANYLYLTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="adenosyl-cobinamide_phosphate" stoichiometry="1.0"/> <speciesReference species="GTP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenosylcobinamide-GDP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_cobalamin_2.7.8.26_COBALAMIN5PSYN-RXN" name="cof_cobalamin_2.7.8.26_COBALAMIN5PSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="adenosylcobinamide-GDP" stoichiometry="1.0"/> <speciesReference species="alpha-ribazole-5'-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenosylcobalamin_5'-phosphate" stoichiometry="1.0"/> <speciesReference species="GMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3234</html:p> </notes> </reaction> <reaction id="cof_cobalamin_3.1.3.73_RXN-8770" name="cof_cobalamin_3.1.3.73_RXN-8770" reversible="false"> <listOfReactants> <speciesReference species="adenosylcobalamin_5'-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_B12" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2236</html:p> </notes> </reaction> <reaction id="cof_cobalamin_1.13.11.79_RXN-8771" name="cof_cobalamin_1.13.11.79_RXN-8771" reversible="false"> <listOfReactants> <speciesReference species="oxygen" stoichiometry="1.0"/> <speciesReference species="FMNH2" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dialurate" stoichiometry="1.0"/> <speciesReference species="5,6-dimethylbenzimidazole" stoichiometry="1.0"/> <speciesReference species="D-erythrose-4-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2560</html:p> </notes> </reaction> <reaction id="cof_cobalamin_2.4.2.21_DMBPPRIBOSYLTRANS-RXN" name="cof_cobalamin_2.4.2.21_DMBPPRIBOSYLTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="5,6-dimethylbenzimidazole" stoichiometry="1.0"/> <speciesReference species="nicotinate_D-ribonucleotide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-ribazole-5'-phosphate" stoichiometry="1.0"/> <speciesReference species="nicotinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2213</html:p> </notes> </reaction> <reaction id="cof_coa_2.1.2.11_3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN" name="cof_coa_2.1.2.11_3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoisovalerate" stoichiometry="1.0"/> <speciesReference species="5,10-methylenetetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydropantoate" stoichiometry="1.0"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2400</html:p> </notes> </reaction> <reaction id="cof_coa_1.1.1.169_2-DEHYDROPANTOATE-REDUCT-RXN" name="cof_coa_1.1.1.169_2-DEHYDROPANTOATE-REDUCT-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-dehydropantoate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(R)-pantoate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1369</html:p> </notes> </reaction> <reaction id="cof_coa_6.3.2.1_PANTOATE-BETA-ALANINE-LIG-RXN" name="cof_coa_6.3.2.1_PANTOATE-BETA-ALANINE-LIG-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="beta-alanine" stoichiometry="1.0"/> <speciesReference species="(R)-pantoate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="(R)-pantothenate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_coa_2.7.1.33_PANTOTHENATE-KIN-RXN" name="cof_coa_2.7.1.33_PANTOTHENATE-KIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="(R)-pantothenate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-4'-phosphopantothenate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0662</html:p> </notes> </reaction> <reaction id="cof_coa_6.3.2.5_P-PANTOCYSLIG-RXN" name="cof_coa_6.3.2.5_P-PANTOCYSLIG-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-4'-phosphopantothenate" stoichiometry="1.0"/> <speciesReference species="CTP" stoichiometry="1.0"/> <speciesReference species="L-cysteine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="R-4'-phosphopantothenoyl-L-cysteine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0210</html:p> </notes> </reaction> <reaction id="cof_coa_4.1.1.36_P-PANTOCYSDECARB-RXN" name="cof_coa_4.1.1.36_P-PANTOCYSDECARB-RXN" reversible="false"> <listOfReactants> <speciesReference species="R-4'-phosphopantothenoyl-L-cysteine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="4'-phosphopantetheine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0210</html:p> </notes> </reaction> <reaction id="cof_coa_2.7.7.3_PANTEPADENYLYLTRAN-RXN" name="cof_coa_2.7.7.3_PANTEPADENYLYLTRAN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="4'-phosphopantetheine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dephospho-CoA" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0954</html:p> </notes> </reaction> <reaction id="cof_coa_2.7.1.24_DEPHOSPHOCOAKIN-RXN" name="cof_coa_2.7.1.24_DEPHOSPHOCOAKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dephospho-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_nad_1.4.3.16_L-ASPARTATE-OXID-RXN" name="cof_nad_1.4.3.16_L-ASPARTATE-OXID-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-aspartate" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> <speciesReference species="alpha-iminosuccinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0997</html:p> </notes> </reaction> <reaction id="cof_nad_1.4.3.16_BS413426" name="cof_nad_1.4.3.16_BS413426" reversible="true"> <listOfReactants> <speciesReference species="L-aspartate" stoichiometry="1.0"/> <speciesReference species="fumarate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-iminosuccinate" stoichiometry="1.0"/> <speciesReference species="succinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0002501843"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0997</html:p> </notes> </reaction> <reaction id="cof_nad_2.5.1.72_QUINOLINATE-SYNTHA-RXN" name="cof_nad_2.5.1.72_QUINOLINATE-SYNTHA-RXN" reversible="false"> <listOfReactants> <speciesReference species="dihydroxyacetone_phosphate" stoichiometry="1.0"/> <speciesReference species="alpha-iminosuccinate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="quinolinate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0002501843"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0998</html:p> </notes> </reaction> <reaction id="cof_nad_2.4.2.19_QUINOPRIBOTRANS-RXN" name="cof_nad_2.4.2.19_QUINOPRIBOTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> <speciesReference species="quinolinate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="nicotinate_D-ribonucleotide" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0002501843"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0996</html:p> </notes> </reaction> <reaction id="cof_nad_2.7.7.18_NICONUCADENYLYLTRAN-RXN" name="cof_nad_2.7.7.18_NICONUCADENYLYLTRAN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="nicotinate_D-ribonucleotide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="nicotinate_adenine_dinucleotide" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0002501843"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_nad_6.3.1.5_BR147" name="cof_nad_6.3.1.5_BR147" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="nicotinate_adenine_dinucleotide" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0002501843"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2172</html:p> </notes> </reaction> <reaction id="cof_nad_2.7.1.23_NAD-KIN-RXN" name="cof_nad_2.7.1.23_NAD-KIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="4.50782e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2219</html:p> </notes> </reaction> <reaction id="cof_nad_3.1.4.1_BS73730" name="cof_nad_3.1.4.1_BS73730" reversible="false"> <listOfReactants> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_nad_salvage_2.4.2.11_nicotinate-phosphoribosyltransferase" name="cof_nad_salvage_2.4.2.11_nicotinate-phosphoribosyltransferase" reversible="true"> <listOfReactants> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="nicotinate_D-ribonucleotide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> <speciesReference species="nicotinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0354</html:p> </notes> </reaction> <reaction id="cof_nad_salvage_3.2.2.5_NADNUCLEOSID-RXN" name="cof_nad_salvage_3.2.2.5_NADNUCLEOSID-RXN" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP-ribose" stoichiometry="1.0"/> <speciesReference species="nicotinamide" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_nad_salvage_3.6.1.13_RXN0-1441" name="cof_nad_salvage_3.6.1.13_RXN0-1441" reversible="false"> <listOfReactants> <speciesReference species="ADP-ribose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="D-ribose-5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2167</html:p> </notes> </reaction> <reaction id="cof_nad_salvage_4.2.1.136_RXN0-6727" name="cof_nad_salvage_4.2.1.136_RXN0-6727" reversible="false"> <listOfReactants> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="(S)-NADHX" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2254</html:p> </notes> </reaction> <reaction id="cof_nad_salvage_3.6.1.22_BS141282" name="cof_nad_salvage_3.6.1.22_BS141282" reversible="false"> <listOfReactants> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="adenosine_3',5'-bisphosphate" stoichiometry="1.0"/> <speciesReference species="nicotinamide_mononucleotide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2278</html:p> </notes> </reaction> <reaction id="cof_nad_salvage_3.6.1.22_NADPYROPHOSPHAT-RXN" name="cof_nad_salvage_3.6.1.22_NADPYROPHOSPHAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="nicotinamide_mononucleotide" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2278</html:p> </notes> </reaction> <reaction id="cof_nad_salvage_2.7.7.1_2.7.7.1-RXN" name="cof_nad_salvage_2.7.7.1_2.7.7.1-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="nicotinamide_mononucleotide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0255</html:p> </notes> </reaction> <reaction id="cof_tetrahydrosulfopterin_archaeosine_3.5.4.16_GTP-CYCLOHYDRO-I-RXN" name="cof_tetrahydrosulfopterin_archaeosine_3.5.4.16_GTP-CYCLOHYDRO-I-RXN" reversible="false"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="7,8-dihydroneopterin_triphosphate" stoichiometry="1.0"/> <speciesReference species="formate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0021040223"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0364</html:p> </notes> </reaction> <reaction id="cof_archaeosine_4.1.2.50_RXN0-5507" name="cof_archaeosine_4.1.2.50_RXN0-5507" reversible="false"> <listOfReactants> <speciesReference species="7,8-dihydroneopterin_triphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetaldehyde" stoichiometry="1.0"/> <speciesReference species="6-carboxy-5,6,7,8-tetrahydropterin" stoichiometry="1.0"/> <speciesReference species="PPPi" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2412</html:p> </notes> </reaction> <reaction id="cof_archaeosine_4.3.99.3_RXN0-6575" name="cof_archaeosine_4.3.99.3_RXN0-6575" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="6-carboxy-5,6,7,8-tetrahydropterin" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="5'-deoxyadenosine" stoichiometry="1.0"/> <speciesReference species="7-carboxy-7-deazaguanine" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0624</html:p> </notes> </reaction> <reaction id="cof_archaeosine_6.3.4.20_RXN-12093" name="cof_archaeosine_6.3.4.20_RXN-12093" reversible="false"> <listOfReactants> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="7-carboxy-7-deazaguanine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="preQ0" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0016</html:p> </notes> </reaction> <reaction id="cof_archaeosine_2.4.2.48_RXN-12144" name="cof_archaeosine_2.4.2.48_RXN-12144" reversible="false"> <listOfReactants> <speciesReference species="preQ0" stoichiometry="1.0"/> <speciesReference species="|Guanine15-in-tRNA-with-GUN-anticodon|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="guanine" stoichiometry="1.0"/> <speciesReference species="|tRNA-PreQ0|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0274</html:p> </notes> </reaction> <reaction id="cof_archaeosine_2.6.1.97_RXN-12145" name="cof_archaeosine_2.6.1.97_RXN-12145" reversible="false"> <listOfReactants> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="|tRNA-PreQ0|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="|tRNA-archaeosine|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2201</html:p> </notes> </reaction> <reaction id="cof_tetrahydrosulfopterin_3.6.1.-_H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN" name="cof_tetrahydrosulfopterin_3.6.1.-_H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN" reversible="false"> <listOfReactants> <speciesReference species="7,8-dihydroneopterin_triphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="7,8-dihydroneopterin_3'-phosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0021040223"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2230</html:p> </notes> </reaction> <reaction id="cof_tetrahydrosulfopterin_3.6.1.-_DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN" name="cof_tetrahydrosulfopterin_3.6.1.-_DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN" reversible="false"> <listOfReactants> <speciesReference species="7,8-dihydroneopterin_3'-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="7,8-dihydro-D-neopterin" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0021040223"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2230</html:p> </notes> </reaction> <reaction id="cof_tetrahydrosulfopterin_neopterin" name="cof_tetrahydrosulfopterin_neopterin" reversible="true"> <listOfReactants> <speciesReference species="7,8-dihydro-D-neopterin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="neopterin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0021040223"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_tetrahydrosulfopterin_sulfopterin" name="cof_tetrahydrosulfopterin_sulfopterin" reversible="true"> <listOfReactants> <speciesReference species="neopterin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="sulfopterin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0021040223"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_tetrahydrosulfopterin_1.5.1.3_BS259283" name="cof_tetrahydrosulfopterin_1.5.1.3_BS259283" reversible="true"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="sulfopterin" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0021040223"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2500</html:p> </notes> </reaction> <reaction id="cof_tetrahydrosulfopterin_6.3.3.2_5-FORMYL-THF-CYCLO-LIGASE-RXN" name="cof_tetrahydrosulfopterin_6.3.3.2_5-FORMYL-THF-CYCLO-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-formyl-tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5,10-methenyltetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0456</html:p> </notes> </reaction> <reaction id="cof_sulfopterin_6.3.4.3_FORMATETHFLIG-RXN" name="cof_sulfopterin_6.3.4.3_FORMATETHFLIG-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="formate" stoichiometry="1.0"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="10-formyl-tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0112218603"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_sulfopterin_1.5.1.20_1.5.1.20-RXN" name="cof_sulfopterin_1.5.1.20_1.5.1.20-RXN" reversible="true"> <listOfReactants> <speciesReference species="5-methyl-tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5,10-methylenetetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0114198113"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_sulfopterin_3.5.1.10_FORMYLTHFDEFORMYL-RXN" name="cof_sulfopterin_3.5.1.10_FORMYLTHFDEFORMYL-RXN" reversible="false"> <listOfReactants> <speciesReference 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<speciesReference species="10-formyl-tetrahydrosulfopterin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0205200355"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_sulfopterin_2.1.2.10_aminomethyltransferase" name="cof_sulfopterin_2.1.2.10_aminomethyltransferase" reversible="true"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="5,10-methenyltetrahydrosulfopterin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="5-formyl-tetrahydrosulfopterin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0919</html:p> </notes> </reaction> <reaction id="cof_sulfopterin_1.5.1.5_METHYLENETHFDEHYDROG-NADP-RXN" name="cof_sulfopterin_1.5.1.5_METHYLENETHFDEHYDROG-NADP-RXN" reversible="true"> <listOfReactants> <speciesReference species="5,10-methylenetetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="5,10-methenyltetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0205200355"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_sam_2.5.1.6_S-ADENMETSYN-RXN" name="cof_sam_2.5.1.6_S-ADENMETSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0046529998"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0199</html:p> </notes> </reaction> <reaction id="cof_sam_3.3.1.1_ADENOSYLHOMOCYSTEINASE-RXN" name="cof_sam_3.3.1.1_ADENOSYLHOMOCYSTEINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenosine" stoichiometry="1.0"/> <speciesReference species="L-homocysteine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0033894614"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0755</html:p> </notes> </reaction> <reaction id="cof_f420_RXN-8076" name="cof_f420_RXN-8076" reversible="false"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="(S)-lactate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(2S)-2-phospholactate" stoichiometry="1.0"/> <speciesReference species="GDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_f420_2.7.7.68_RXN-8077" name="cof_f420_2.7.7.68_RXN-8077" reversible="false"> <listOfReactants> <speciesReference species="(2S)-2-phospholactate" stoichiometry="1.0"/> <speciesReference species="GTP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(2S)-lactyl-2-diphospho-5'-guanosine" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2432</html:p> </notes> </reaction> <reaction id="cof_f420_2.5.1.77_RXN-8079" name="cof_f420_2.5.1.77_RXN-8079" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="2.0"/> <speciesReference species="4-hydroxyphenylpyruvate" stoichiometry="1.0"/> <speciesReference species="5-amino-6-(D-ribitylamino)uracil" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonium" stoichiometry="1.0"/> <speciesReference species="5'-deoxyadenosine" stoichiometry="2.0"/> <speciesReference species="oxalate" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="2.0"/> <speciesReference species="7,8-didemethyl-8-hydroxy-5-deazariboflavin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0362</html:p> </notes> </reaction> <reaction id="cof_f420_2.7.8.28_RXN-8078" name="cof_f420_2.7.8.28_RXN-8078" reversible="false"> <listOfReactants> <speciesReference species="(2S)-lactyl-2-diphospho-5'-guanosine" stoichiometry="1.0"/> <speciesReference species="7,8-didemethyl-8-hydroxy-5-deazariboflavin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="factor_F420-0" stoichiometry="1.0"/> <speciesReference species="GMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="cof_f420_1.5.98.1_1.5.99.9-RXN" name="cof_f420_1.5.98.1_1.5.99.9-RXN" reversible="true"> <listOfReactants> <speciesReference species="|Oxidized-Factor-F420|" stoichiometry="1.0"/> <speciesReference species="5,10-methylenetetrahydrosulfopterin" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="|Reduced-Factor-F420|" stoichiometry="1.0"/> <speciesReference species="5,10-methenyltetrahydrosulfopterin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="sulf_2.7.7.4_SULFATE-ADENYLYLTRANS-RXN" name="sulf_2.7.7.4_SULFATE-ADENYLYLTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="sulfate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenosine_5'-phosphosulfate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.010624411"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2912</html:p> </notes> </reaction> <reaction id="sulf_2.7.1.25_ADENYLYLSULFKIN-RXN" name="sulf_2.7.1.25_ADENYLYLSULFKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="adenosine_5'-phosphosulfate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphoadenosine-5'-phosphosulfate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.010624411"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0216</html:p> </notes> </reaction> <reaction id="sulf_1.8.4.8_1.8.4.8-RXN" name="sulf_1.8.4.8_1.8.4.8-RXN" reversible="true"> <listOfReactants> <speciesReference species="adenosine_3',5'-bisphosphate" stoichiometry="1.0"/> <speciesReference species="sulfite" stoichiometry="1.0"/> <speciesReference species="|Ox-Thioredoxin|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="phosphoadenosine-5'-phosphosulfate" stoichiometry="1.0"/> <speciesReference species="|Red-Thioredoxin|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0103868026"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2911</html:p> </notes> </reaction> <reaction id="sulf_1.8.1.2_SULFITE-REDUCT-RXN" name="sulf_1.8.1.2_SULFITE-REDUCT-RXN" reversible="true"> <listOfReactants> <speciesReference species="hydrogen_sulfide" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="3.0"/> <speciesReference species="H2O" stoichiometry="3.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="3.0"/> <speciesReference species="NADPH" stoichiometry="3.0"/> <speciesReference species="sulfite" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0103868026"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2909</html:p> </notes> </reaction> <reaction id="sulf_3.1.3.7_325-BISPHOSPHATE-NUCLEOTIDASE-RXN" name="sulf_3.1.3.7_325-BISPHOSPHATE-NUCLEOTIDASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="adenosine_3',5'-bisphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.010624411"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="prpp_nuc_cof_nad_2.7.6.1_PRPPSYN-RXN" name="prpp_nuc_cof_nad_2.7.6.1_PRPPSYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="D-ribose-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.029230918"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1045</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_thiamin_2.4.2.14_PRPPAMIDOTRANS-RXN" name="nuc_purin_de-novo_thiamin_2.4.2.14_PRPPAMIDOTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-phospho-beta-D-ribosyl-amine" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092981751"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0632, SSO0633</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_thiamin_6.3.4.13_GLYRIBONUCSYN-RXN" name="nuc_purin_de-novo_thiamin_6.3.4.13_GLYRIBONUCSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-phospho-beta-D-ribosyl-amine" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="glycine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-phospho-ribosyl-glycineamide" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092981751"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0635</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_thiamin_2.1.2.-_GARTRANSFORMYL2-RXN" name="nuc_purin_de-novo_thiamin_2.1.2.-_GARTRANSFORMYL2-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-phospho-ribosyl-glycineamide" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="formate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5'-phosphoribosyl-N-formylglycineamide" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0026, SSO0530</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_thiamin_2.1.2.2_GART-RXN" name="nuc_purin_de-novo_thiamin_2.1.2.2_GART-RXN" reversible="true"> <listOfReactants> <speciesReference species="10-formyl-tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="5-phospho-ribosyl-glycineamide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5'-phosphoribosyl-N-formylglycineamide" stoichiometry="1.0"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092981751"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0026</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_thiamin_6.3.5.3_FGAMSYN-RXN" name="nuc_purin_de-novo_thiamin_6.3.5.3_FGAMSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="5'-phosphoribosyl-N-formylglycineamide" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-phosphoribosyl-N-formylglycineamidine" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092981751"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0628, SSO0629</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_thiamin_6.3.3.1_AIRS-RXN" name="nuc_purin_de-novo_thiamin_6.3.3.1_AIRS-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-phosphoribosyl-N-formylglycineamidine" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-amino-1-(5-phospho-D-ribosyl)imidazole" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092981751"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0636</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_4.1.1.21_AIRCARBOXY-RXN" name="nuc_purin_de-novo_4.1.1.21_AIRCARBOXY-RXN" reversible="true"> <listOfReactants> <speciesReference species="5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-amino-1-(5-phospho-D-ribosyl)imidazole" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0092891595"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1065</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_6.3.2.6_SAICARSYN-RXN" name="nuc_purin_de-novo_6.3.2.6_SAICARSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> <speciesReference species="5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092891595"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0626</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_4.3.2.2_AICARSYN-RXN" name="nuc_purin_de-novo_4.3.2.2_AICARSYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="aminoimidazole_carboxamide_ribonucleotide" stoichiometry="1.0"/> <speciesReference species="fumarate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092891595"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0240</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_6.3.4.-_RXN-10066" name="nuc_purin_de-novo_6.3.4.-_RXN-10066" reversible="false"> <listOfReactants> <speciesReference species="aminoimidazole_carboxamide_ribonucleotide" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="formate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphoribosyl-formamido-carboxamide" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0139785275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0239</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_3.5.4.10_IMPCYCLOHYDROLASE-RXN" name="nuc_purin_de-novo_3.5.4.10_IMPCYCLOHYDROLASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="IMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphoribosyl-formamido-carboxamide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0139785275"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="nuc_purin_de-novo_1.1.1.205_IMP-DEHYDROG-RXN" name="nuc_purin_de-novo_1.1.1.205_IMP-DEHYDROG-RXN" reversible="true"> <listOfReactants> <speciesReference species="IMP" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="XMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0047105437"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2740</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_6.3.5.2_GMP-SYN-GLUT-RXN" name="nuc_purin_de-novo_6.3.5.2_GMP-SYN-GLUT-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="XMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="GMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0047105437"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2451, SSO3232</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_6.3.4.4_ADENYLOSUCCINATE-SYNTHASE-RXN" name="nuc_purin_de-novo_6.3.4.4_ADENYLOSUCCINATE-SYNTHASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="IMP" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenylo-succinate" stoichiometry="1.0"/> <speciesReference species="GDP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092679838"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0242</html:p> </notes> </reaction> <reaction id="nuc_purin_de-novo_4.3.2.2_AMPSYN-RXN" name="nuc_purin_de-novo_4.3.2.2_AMPSYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="adenylo-succinate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="fumarate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0092679838"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0240</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_2.1.3.2_ASPCARBTRANS-RXN" name="nuc_pyrim_de-novo_2.1.3.2_ASPCARBTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="carbamoyl-phosphate" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-carbamoyl-L-aspartate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0061289844"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0614</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_3.5.2.3_DIHYDROOROT-RXN" name="nuc_pyrim_de-novo_3.5.2.3_DIHYDROOROT-RXN" reversible="true"> <listOfReactants> <speciesReference species="(S)-dihydroorotate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-carbamoyl-L-aspartate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0061289844"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0611</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_1.3.5.2_BS413428" name="nuc_pyrim_de-novo_1.3.5.2_BS413428" reversible="true"> <listOfReactants> <speciesReference species="(S)-dihydroorotate" stoichiometry="1.0"/> <speciesReference species="FMN" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="orotate" stoichiometry="1.0"/> <speciesReference species="FMNH2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" 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name="nuc_pyrim_de-novo_1.3.98.1_BS258661" reversible="false"> <listOfReactants> <speciesReference species="(S)-dihydroorotate" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="orotate" stoichiometry="1.0"/> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0610</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_1.3.1.14_BS370137" name="nuc_pyrim_de-novo_1.3.1.14_BS370137" reversible="true"> <listOfReactants> <speciesReference species="(S)-dihydroorotate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="orotate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0610</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_2.4.2.10_OROPRIBTRANS-RXN" name="nuc_pyrim_de-novo_2.4.2.10_OROPRIBTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="orotidine-5'-phosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="orotate" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0061289844"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0615</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_4.1.1.23_OROTPDECARB-RXN" name="nuc_pyrim_de-novo_4.1.1.23_OROTPDECARB-RXN" reversible="false"> <listOfReactants> <speciesReference species="orotidine-5'-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="UMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" 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</listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0976</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_2.7.4.22_RXN-14122" name="nuc_pyrim_de-novo_2.7.4.22_RXN-14122" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dUMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dUDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0976</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_2.7.4.6_UDPKIN-RXN" name="nuc_pyrim_de-novo_2.7.4.6_UDPKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="UTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_pyrim_de-novo_6.3.4.2_CTPSYN-RXN" name="nuc_pyrim_de-novo_6.3.4.2_CTPSYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="UTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="CTP" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0021775187"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0201</html:p> </notes> </reaction> <reaction id="nuc_purin_6.3.4.18_RXN0-742" name="nuc_purin_6.3.4.18_RXN0-742" reversible="false"> <listOfReactants> <speciesReference species="5-amino-1-(5-phospho-D-ribosyl)imidazole" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="hydrogen_carbonate" 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<listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="nuc_purin_4.6.1.1_ADENYLATECYC-RXN" name="nuc_purin_4.6.1.1_ADENYLATECYC-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cyclic-AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0253</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.5.4.3_GUANINE-DEAMINASE-RXN" name="nuc_purin_salvage_3.5.4.3_GUANINE-DEAMINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="guanine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="xanthine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0398</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.8_GUANYL-KIN-RXN" name="nuc_purin_2.7.4.8_GUANYL-KIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="GMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="GDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0033284757"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="nuc_purin_3.6.1.15_3.6.3.50-RXN" name="nuc_purin_3.6.1.15_3.6.3.50-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.15_RXN-12196" name="nuc_pyrim_3.6.1.15_RXN-12196" reversible="false"> <listOfReactants> <speciesReference species="UTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.1.4.1_BS139757" name="nuc_pyrim_3.1.4.1_BS139757" reversible="false"> <listOfReactants> <speciesReference species="UTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="nuc_pyrim_2.7.4.14_RXN-11832" name="nuc_pyrim_2.7.4.14_RXN-11832" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="CMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="CDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0001784029"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0692</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.14_RXN-7913" name="nuc_pyrim_2.7.4.14_RXN-7913" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dCMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dCDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0003848714"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0692</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.9_BS359746" name="nuc_pyrim_2.7.4.9_BS359746" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dUMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dUDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0780, SSO1191, SSO1192</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.9_DTMPKI-RXN" name="nuc_pyrim_2.7.4.9_DTMPKI-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dTMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dTDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0780, SSO1191, SSO1192</html:p> </notes> </reaction> <reaction id="nuc_pyrim_1.17.4.1_CDPREDUCT-RXN" name="nuc_pyrim_1.17.4.1_CDPREDUCT-RXN" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="CDP" stoichiometry="1.0"/> <speciesReference species="|Red-Thioredoxin|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dCDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="|Ox-Thioredoxin|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0003848714"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0929, SSO2498</html:p> </notes> </reaction> <reaction id="nuc_pyrim_1.17.4.1_UDPREDUCT-RXN" name="nuc_pyrim_1.17.4.1_UDPREDUCT-RXN" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> <speciesReference species="|Red-Thioredoxin|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dUDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="|Ox-Thioredoxin|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0006905723"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0929, SSO2498</html:p> </notes> </reaction> <reaction id="nuc_purin_1.17.4.1_ADPREDUCT-RXN" name="nuc_purin_1.17.4.1_ADPREDUCT-RXN" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="|Red-Thioredoxin|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dADP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="|Ox-Thioredoxin|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0006905723"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0929, SSO2498</html:p> </notes> </reaction> <reaction id="nuc_purin_1.17.4.1_GDPREDUCT-RXN" name="nuc_purin_1.17.4.1_GDPREDUCT-RXN" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="GDP" stoichiometry="1.0"/> <speciesReference species="|Red-Thioredoxin|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dGDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="|Ox-Thioredoxin|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0003848714"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0929, SSO2498</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.5.4.13_DCTP-DEAM-RXN" name="nuc_pyrim_3.5.4.13_DCTP-DEAM-RXN" reversible="false"> <listOfReactants> <speciesReference species="dCTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="dUTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0190, SSO2954</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.5.4.13_RXN-14118" name="nuc_pyrim_3.5.4.13_RXN-14118" reversible="false"> <listOfReactants> <speciesReference species="CTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UTP" stoichiometry="1.0"/> <speciesReference species="ammonium" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0190, SSO2954</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.6_DCDPKIN-RXN" name="nuc_pyrim_2.7.4.6_DCDPKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dCDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dCTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.6_DTDPKIN-RXN" name="nuc_pyrim_2.7.4.6_DTDPKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dTDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dTTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.6_DUDPKIN-RXN" name="nuc_pyrim_2.7.4.6_DUDPKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dUDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dUTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.6_GDPKIN-RXN" name="nuc_pyrim_2.7.4.6_GDPKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="GDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="GTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6978012154"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.6_RXN-14120" name="nuc_purin_2.7.4.6_RXN-14120" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="IDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ITP" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.6_DADPKIN-RXN" name="nuc_purin_2.7.4.6_DADPKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dADP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dATP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.6_DGDPKIN-RXN" name="nuc_purin_2.7.4.6_DGDPKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dGDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dGTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.3_R01547" name="nuc_purin_2.7.4.3_R01547" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dAMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0006905723"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0461, SSO0694, SSO1041</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.3_ADENYL-KIN-RXN" name="nuc_purin_2.7.4.3_ADENYL-KIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0461, SSO0694, SSO1041</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.19_RXN-12195" name="nuc_pyrim_3.6.1.19_RXN-12195" reversible="false"> <listOfReactants> <speciesReference species="CTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CDP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0432</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.19_BS141286" name="nuc_pyrim_3.6.1.19_BS141286" reversible="false"> <listOfReactants> <speciesReference species="UDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UMP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0432</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.19_BS141301" 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</notes> </reaction> <reaction id="nuc_pyrim_3.6.1.19_BS384570" name="nuc_pyrim_3.6.1.19_BS384570" reversible="false"> <listOfReactants> <speciesReference species="dCDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dCMP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0432</html:p> </notes> </reaction> <reaction id="nuc_purin_3.6.1.19_BS384600" name="nuc_purin_3.6.1.19_BS384600" reversible="false"> <listOfReactants> <speciesReference species="dGDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dGMP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0003848714"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0432</html:p> </notes> </reaction> <reaction id="nuc_purin_3.6.1.19_BS402613" name="nuc_purin_3.6.1.19_BS402613" reversible="false"> <listOfReactants> <speciesReference species="dITP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dIDP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0432</html:p> </notes> </reaction> <reaction id="nuc_purin_3.6.1.19_RXN-14214" name="nuc_purin_3.6.1.19_RXN-14214" reversible="false"> <listOfReactants> <speciesReference species="dATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" 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</kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0432</html:p> </notes> </reaction> <reaction id="nuc_purin_3.6.1.19_RXN0-5462" name="nuc_purin_3.6.1.19_RXN0-5462" reversible="false"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="GDP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0432</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.19_BS93276" name="nuc_pyrim_3.6.1.19_BS93276" reversible="false"> <listOfReactants> <speciesReference species="CDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CMP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0432</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.15_RXN-12195" name="nuc_pyrim_3.6.1.15_RXN-12195" reversible="false"> <listOfReactants> <speciesReference species="CTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CDP" 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</math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.15_BS141301" name="nuc_pyrim_3.6.1.15_BS141301" reversible="false"> <listOfReactants> <speciesReference species="dUDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dUMP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" 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<html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_purin_3.6.1.15_BS402613" name="nuc_purin_3.6.1.15_BS402613" reversible="false"> <listOfReactants> <speciesReference species="dITP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dIDP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_purin_3.6.1.15_RXN-14214" name="nuc_purin_3.6.1.15_RXN-14214" reversible="false"> <listOfReactants> <speciesReference species="dATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.15_RXN-14216" name="nuc_pyrim_3.6.1.15_RXN-14216" reversible="false"> <listOfReactants> <speciesReference species="dCTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dCDP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_purin_3.6.1.15_RXN0-5462" name="nuc_purin_3.6.1.15_RXN0-5462" reversible="false"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="GDP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.15_BS93276" name="nuc_pyrim_3.6.1.15_BS93276" reversible="false"> <listOfReactants> <speciesReference species="CDP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CMP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0909, SSO2171</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.1.1.148_RXN-8850" name="nuc_pyrim_2.1.1.148_RXN-8850" reversible="false"> <listOfReactants> <speciesReference species="dUMP" stoichiometry="1.0"/> <speciesReference species="5,10-methylenetetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="dTMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0006905723"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0321</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.9_BR48071" name="nuc_pyrim_2.7.4.9_BR48071" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="UMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0780, SSO1191, SSO1192</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.6_CDPKIN-RXN" name="nuc_pyrim_2.7.4.6_CDPKIN-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="CDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="CTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0001429198"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.6_RXN-14074" name="nuc_purin_2.7.4.6_RXN-14074" reversible="true"> <listOfReactants> <speciesReference species="GDP" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.2384985732"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.6_RXN-14228" name="nuc_purin_2.7.4.6_RXN-14228" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dIDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dITP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0230</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.14_RXN-12002" name="nuc_pyrim_2.7.4.14_RXN-12002" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="UMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0692</html:p> </notes> </reaction> <reaction id="nuc_pyrim_2.7.4.14_RXN-14122" name="nuc_pyrim_2.7.4.14_RXN-14122" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dUMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dUDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0006905723"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0692</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.3_BS358184" name="nuc_purin_2.7.4.3_BS358184" reversible="true"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="GDP" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0461, SSO0694, SSO1041</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.3_BS358244" name="nuc_purin_2.7.4.3_BS358244" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="CDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="CTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0461, SSO0694, SSO1041</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.3_BS358245" name="nuc_purin_2.7.4.3_BS358245" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="dCDP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="dCTP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0461, SSO0694, SSO1041</html:p> </notes> </reaction> <reaction id="nuc_purin_2.7.4.3_BS359742" name="nuc_purin_2.7.4.3_BS359742" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="CMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="CDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0461, SSO0694, SSO1041</html:p> </notes> </reaction> <reaction id="nuc_pyrim_3.6.1.3_BS141341" name="nuc_pyrim_3.6.1.3_BS141341" reversible="false"> <listOfReactants> <speciesReference species="dCTP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dCDP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0120, SSO0473, SSO0572, SSO0959, SSO1545, SSO2387, SSO2420, SSO2452, SSO2680, SSO2831</html:p> </notes> </reaction> <reaction id="nuc_purin_3.6.1.3_3.6.3.50-RXN" name="nuc_purin_3.6.1.3_3.6.3.50-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0120, SSO0473, SSO0572, SSO0959, SSO1545, SSO2387, SSO2420, SSO2452, SSO2680, SSO2831</html:p> </notes> </reaction> <reaction id="nuc_2.7.4.3_BS358186" name="nuc_2.7.4.3_BS358186" reversible="true"> <listOfReactants> <speciesReference species="UTP" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UDP" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0736356206"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0461, SSO0694, SSO1041</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.1_ADENPHOSPHOR-RXN" name="nuc_purin_salvage_2.4.2.1_ADENPHOSPHOR-RXN" reversible="true"> <listOfReactants> <speciesReference species="adenosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenine" stoichiometry="1.0"/> <speciesReference species="alpha-D-ribose-1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0033894614"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1519, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.1_RXN0-5199" name="nuc_purin_salvage_2.4.2.1_RXN0-5199" reversible="true"> <listOfReactants> <speciesReference species="guanosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="guanine" stoichiometry="1.0"/> <speciesReference species="alpha-D-ribose-1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1519, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.1_DEOXYADENPHOSPHOR-RXN" name="nuc_purin_salvage_2.4.2.1_DEOXYADENPHOSPHOR-RXN" reversible="true"> <listOfReactants> <speciesReference species="deoxyadenosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenine" stoichiometry="1.0"/> <speciesReference species="2-deoxy-alpha-D-ribose_1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1519, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.1_DEOXYGUANPHOSPHOR-RXN" name="nuc_purin_salvage_2.4.2.1_DEOXYGUANPHOSPHOR-RXN" reversible="true"> <listOfReactants> <speciesReference species="deoxyguanosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-deoxy-alpha-D-ribose_1-phosphate" stoichiometry="1.0"/> <speciesReference species="guanine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1519, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.1_deoxyuridine" name="nuc_purin_salvage_2.4.2.1_deoxyuridine" reversible="true"> <listOfReactants> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="deoxyuridine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-deoxy-alpha-D-ribose_1-phosphate" stoichiometry="1.0"/> <speciesReference species="uracil" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1519, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.2.2.1_xanthosine" name="nuc_purin_salvage_3.2.2.1_xanthosine" reversible="false"> <listOfReactants> <speciesReference species="xanthosine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="xanthine" stoichiometry="1.0"/> <speciesReference species="alpha-D-ribofuranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2243</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.22_XANPRIBOSYLTRAN-RXN" name="nuc_purin_salvage_2.4.2.22_XANPRIBOSYLTRAN-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> <speciesReference species="xanthine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="XMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0233</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.7_BS354829" name="nuc_purin_salvage_2.4.2.7_BS354829" reversible="false"> <listOfReactants> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> <speciesReference species="guanine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="GMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2342</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.7_ADENPRIBOSYLTRAN-RXN" name="nuc_purin_salvage_2.4.2.7_ADENPRIBOSYLTRAN-RXN" reversible="false"> <listOfReactants> <speciesReference species="adenine" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0046529998"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2342</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.8_R00190" name="nuc_purin_salvage_2.4.2.8_R00190" reversible="false"> <listOfReactants> <speciesReference species="adenine" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2424</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.8_R02142" name="nuc_purin_salvage_2.4.2.8_R02142" reversible="false"> <listOfReactants> <speciesReference species="xanthine" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="XMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2424</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.8_GUANPRIBOSYLTRAN-RXN" name="nuc_purin_salvage_2.4.2.8_GUANPRIBOSYLTRAN-RXN" reversible="false"> <listOfReactants> <speciesReference species="guanine" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="GMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2424</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.8_HYPOXANPRIBOSYLTRAN-RXN" name="nuc_purin_salvage_2.4.2.8_HYPOXANPRIBOSYLTRAN-RXN" reversible="false"> <listOfReactants> <speciesReference species="hypoxanthine" stoichiometry="1.0"/> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="IMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2424</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.28_RXN-14304" name="nuc_purin_salvage_2.4.2.28_RXN-14304" reversible="true"> <listOfReactants> <speciesReference species="5'-deoxyadenosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-deoxy-alpha-ribose_1-phosphate" stoichiometry="1.0"/> <speciesReference species="adenine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.80312e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2343, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_AMP-DEPHOSPHORYLATION-RXN" name="nuc_purin_salvage_3.1.3.5_AMP-DEPHOSPHORYLATION-RXN" reversible="false"> <listOfReactants> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_XMPXAN-RXN" name="nuc_purin_salvage_3.1.3.5_XMPXAN-RXN" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="XMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="xanthosine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_BS64635" name="nuc_purin_salvage_3.1.3.5_BS64635" reversible="false"> <listOfReactants> <speciesReference species="dGMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="deoxyguanosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_cof_beta-ala_coa_3.1.3.5_RXN-14025" name="nuc_pyrim_salvage_cof_beta-ala_coa_3.1.3.5_RXN-14025" reversible="false"> <listOfReactants> <speciesReference species="UMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="uridine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_3.1.3.5_RXN-14026" name="nuc_pyrim_salvage_3.1.3.5_RXN-14026" reversible="false"> <listOfReactants> <speciesReference species="CMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cytidine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_RXN-7607" name="nuc_purin_salvage_3.1.3.5_RXN-7607" reversible="false"> <listOfReactants> <speciesReference species="IMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="inosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_RXN-7609" name="nuc_purin_salvage_3.1.3.5_RXN-7609" reversible="false"> <listOfReactants> <speciesReference species="GMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="guanosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_dTMP" name="nuc_purin_salvage_3.1.3.5_dTMP" reversible="false"> <listOfReactants> <speciesReference species="dTMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="thymidine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_dUMP" name="nuc_purin_salvage_3.1.3.5_dUMP" reversible="false"> <listOfReactants> <speciesReference species="dUMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="deoxyuridine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_dAMP" name="nuc_purin_salvage_3.1.3.5_dAMP" reversible="false"> <listOfReactants> <speciesReference species="dAMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="deoxyadenosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_1.3.1.1_RXN0-6565" name="nuc_pyrim_salvage_1.3.1.1_RXN0-6565" reversible="true"> <listOfReactants> <speciesReference species="5,6-dihydrothymine" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="thymine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0610</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_3.5.2.2_RXN-11211" name="nuc_pyrim_salvage_3.5.2.2_RXN-11211" reversible="false"> <listOfReactants> <speciesReference species="5,6-dihydrothymine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-ureido-isobutyrate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2527</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_3.5.1.6_RXN-11210" name="nuc_pyrim_salvage_3.5.1.6_RXN-11210" reversible="false"> <listOfReactants> <speciesReference species="3-ureido-isobutyrate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="(R)-3-amino-2-methylpropanoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2174</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_cof_beta-ala_coa_1.3.1.1_DIHYDROURACIL-DEHYDROGENASE-NAD+-RXN" name="nuc_pyrim_salvage_cof_beta-ala_coa_1.3.1.1_DIHYDROURACIL-DEHYDROGENASE-NAD+-RXN" reversible="true"> <listOfReactants> <speciesReference species="5,6-dihydrouracil" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="uracil" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0610</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_cof_beta-ala_coa_3.5.2.2_DIHYDROPYRIMIDINASE-RXN" name="nuc_pyrim_salvage_cof_beta-ala_coa_3.5.2.2_DIHYDROPYRIMIDINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="5,6-dihydrouracil" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-ureidopropionate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2527</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_cof_beta-ala_coa_3.5.1.6_BETA-UREIDOPROPIONASE-RXN" name="nuc_pyrim_salvage_cof_beta-ala_coa_3.5.1.6_BETA-UREIDOPROPIONASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="3-ureidopropionate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="beta-alanine" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2174</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_3.5.4.1_CYTDEAM-RXN" name="nuc_pyrim_salvage_3.5.4.1_CYTDEAM-RXN" reversible="false"> <listOfReactants> <speciesReference species="cytosine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="uracil" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2770</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_cof_beta-ala_coa_3.2.2.3_uridine" name="nuc_pyrim_salvage_cof_beta-ala_coa_3.2.2.3_uridine" reversible="false"> <listOfReactants> <speciesReference species="uridine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="uracil" stoichiometry="1.0"/> <speciesReference species="alpha-D-ribofuranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2243</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_2.4.2.9_URACIL-PRIBOSYLTRANS-RXN" name="nuc_pyrim_salvage_2.4.2.9_URACIL-PRIBOSYLTRANS-RXN" reversible="true"> <listOfReactants> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="UMP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-phospho-alpha-D-ribose_1-diphosphate" stoichiometry="1.0"/> <speciesReference species="uracil" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.03894e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0231</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.1_INOPHOSPHOR-RXN" name="nuc_purin_salvage_2.4.2.1_INOPHOSPHOR-RXN" reversible="true"> <listOfReactants> <speciesReference species="inosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hypoxanthine" stoichiometry="1.0"/> <speciesReference species="alpha-D-ribose-1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1519, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_1.17.1.4_RXN-7682" name="nuc_purin_salvage_1.17.1.4_RXN-7682" reversible="false"> <listOfReactants> <speciesReference species="hypoxanthine" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="xanthine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3009</html:p> </notes> </reaction> <reaction id="nuc_purin_degra-nuc_1.17.1.4_RXN0-901" name="nuc_purin_degra-nuc_1.17.1.4_RXN0-901" reversible="true"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="xanthine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="urate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3009</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.1_XANTHOSINEPHOSPHORY-RXN" name="nuc_purin_salvage_2.4.2.1_XANTHOSINEPHOSPHORY-RXN" reversible="true"> <listOfReactants> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="xanthosine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-ribose-1-phosphate" stoichiometry="1.0"/> <speciesReference species="xanthine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1519, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_2.4.2.1_DEOXYINOPHOSPHOR-RXN" name="nuc_purin_salvage_2.4.2.1_DEOXYINOPHOSPHOR-RXN" reversible="true"> <listOfReactants> <speciesReference species="deoxyinosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-deoxy-alpha-D-ribose_1-phosphate" stoichiometry="1.0"/> <speciesReference species="hypoxanthine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1519, SSO2706</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_3.2.2.3_BS214506" name="nuc_pyrim_salvage_3.2.2.3_BS214506" reversible="false"> <listOfReactants> <speciesReference species="xanthosine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-ribopyranose" stoichiometry="1.0"/> <speciesReference species="xanthine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2243</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_3.2.2.3_RXN0-361" name="nuc_pyrim_salvage_3.2.2.3_RXN0-361" reversible="false"> <listOfReactants> <speciesReference species="cytidine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cytosine" stoichiometry="1.0"/> <speciesReference species="alpha-D-ribofuranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2243</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.2.2.8_R01245" name="nuc_purin_salvage_3.2.2.8_R01245" reversible="false"> <listOfReactants> <speciesReference species="adenosine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenine" stoichiometry="1.0"/> <speciesReference species="beta-D-ribopyranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0505</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.2.2.8_R01677" name="nuc_purin_salvage_3.2.2.8_R01677" reversible="false"> <listOfReactants> <speciesReference species="guanosine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="guanine" stoichiometry="1.0"/> <speciesReference species="beta-D-ribopyranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0505</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.2.2.8_R01770" name="nuc_purin_salvage_3.2.2.8_R01770" reversible="false"> <listOfReactants> <speciesReference species="inosine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hypoxanthine" stoichiometry="1.0"/> <speciesReference species="beta-D-ribopyranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0505</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_3.2.2.8_R02137" name="nuc_pyrim_salvage_3.2.2.8_R02137" reversible="false"> <listOfReactants> <speciesReference species="cytidine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cytosine" stoichiometry="1.0"/> <speciesReference species="beta-D-ribopyranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0505</html:p> </notes> </reaction> <reaction id="nuc_purin_salvage_3.1.3.5_BS73810" name="nuc_purin_salvage_3.1.3.5_BS73810" reversible="false"> <listOfReactants> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenosine" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_pyrim_salvage_3.1.3.5_BS364579" name="nuc_pyrim_salvage_3.1.3.5_BS364579" reversible="false"> <listOfReactants> <speciesReference species="dCMP" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="deoxycytidine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2028</html:p> </notes> </reaction> <reaction id="nuc_salvage_5.4.2.7_PPENTOMUT-RXN" name="nuc_salvage_5.4.2.7_PPENTOMUT-RXN" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-ribose-1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-ribose-5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0033894614"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="nuc_salvage_5.4.2.7_D-PPENTOMUT-RXN" name="nuc_salvage_5.4.2.7_D-PPENTOMUT-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-deoxy-alpha-D-ribose_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-deoxy-alpha-D-ribose_5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="nuc_salvage_4.1.2.4_DEOXYRIBOSE-P-ALD-RXN" name="nuc_salvage_4.1.2.4_DEOXYRIBOSE-P-ALD-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-deoxy-alpha-D-ribose_5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetaldehyde" stoichiometry="1.0"/> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="isoprenoids_2.3.3.10_HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN" name="isoprenoids_2.3.3.10_HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="acetoacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-3-hydroxy-3-methylglutaryl-CoA" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0418784421"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0535</html:p> </notes> </reaction> <reaction id="isoprenoids_1.1.1.34_1.1.1.34-RXN" name="isoprenoids_1.1.1.34_1.1.1.34-RXN" reversible="true"> <listOfReactants> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="(R)-mevalonate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-3-hydroxy-3-methylglutaryl-CoA" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="2.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0418784421"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0531</html:p> </notes> </reaction> <reaction id="isoprenoids_2.7.1.36_MEVALONATE-KINASE-RXN" name="isoprenoids_2.7.1.36_MEVALONATE-KINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="(R)-mevalonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="mevalonate-5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0418784421"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0383</html:p> </notes> </reaction> <reaction id="isoprenoids_2.7.4.2_PHOSPHOMEVALONATE-KINASE-RXN" name="isoprenoids_2.7.4.2_PHOSPHOMEVALONATE-KINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="mevalonate-5-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="mevalonate-diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0418784421"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2988</html:p> </notes> </reaction> <reaction id="isoprenoids_4.1.1.33_DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN" name="isoprenoids_4.1.1.33_DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="mevalonate-diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="isopentenyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0418784421"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2989</html:p> </notes> </reaction> <reaction id="isoprenoids_2.7.4.26_RXN-10068" name="isoprenoids_2.7.4.26_RXN-10068" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="isopentenyl_phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="isopentenyl_diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0064</html:p> </notes> </reaction> <reaction id="isoprenoids_5.3.3.2_IPPISOM-RXN" name="isoprenoids_5.3.3.2_IPPISOM-RXN" reversible="true"> <listOfReactants> <speciesReference species="isopentenyl_diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dimethylallyl_diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0104250591"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0063</html:p> </notes> </reaction> <reaction id="isoprenoids_2.5.1.1_GPPSYN-RXN" name="isoprenoids_2.5.1.1_GPPSYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="dimethylallyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="isopentenyl_diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="geranyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0104250591"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0061</html:p> </notes> </reaction> <reaction id="isoprenoids_2.5.1.10_FPPSYN-RXN" name="isoprenoids_2.5.1.10_FPPSYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="isopentenyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="geranyl_diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(2E,6E)-farnesyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0104250591"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0061</html:p> </notes> </reaction> <reaction id="isoprenoids_2.5.1.29_FARNESYLTRANSTRANSFERASE-RXN" name="isoprenoids_2.5.1.29_FARNESYLTRANSTRANSFERASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="isopentenyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="(2E,6E)-farnesyl_diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0103359563"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0061</html:p> </notes> </reaction> <reaction id="isoprenoids_1.3.99.34_geranylgeranyl-reductase-partial-reduction" name="isoprenoids_1.3.99.34_geranylgeranyl-reductase-partial-reduction" reversible="true"> <listOfReactants> <speciesReference species="phytyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="3.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="3.0"/> <speciesReference species="NADH" stoichiometry="3.0"/> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2776</html:p> </notes> </reaction> <reaction id="isoprenoids_1.3.99.34_geranylgeranyl-reductase-full-reduction" name="isoprenoids_1.3.99.34_geranylgeranyl-reductase-full-reduction" reversible="true"> <listOfReactants> <speciesReference species="phytanyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="4.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="4.0"/> <speciesReference species="NADH" stoichiometry="4.0"/> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2776</html:p> </notes> </reaction> <reaction id="terpene_2.5.1.82_RXN-11485" name="terpene_2.5.1.82_RXN-11485" reversible="true"> <listOfReactants> <speciesReference species="isopentenyl_diphosphate" stoichiometry="2.0"/> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="all-trans-hexaprenyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2345</html:p> </notes> </reaction> <reaction id="terpene_2.5.1.89_RXN-11488" name="terpene_2.5.1.89_RXN-11488" reversible="true"> <listOfReactants> <speciesReference species="isopentenyl_diphosphate" stoichiometry="7.0"/> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="7.0"/> <speciesReference species="tri-trans,hepta-cis-undecaprenyl_diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0163</html:p> </notes> </reaction> <reaction id="lipids_1.1.1.261_1.1.1.261-RXN_NAD" name="lipids_1.1.1.261_1.1.1.261-RXN_NAD" reversible="false"> <listOfReactants> <speciesReference species="dihydroxyacetone_phosphate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="sn-glycerol-1-phosphate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0051679781"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0760</html:p> </notes> </reaction> <reaction id="lipids_1.1.1.261_1.1.1.261-RXN_NADP" name="lipids_1.1.1.261_1.1.1.261-RXN_NADP" reversible="false"> <listOfReactants> <speciesReference species="dihydroxyacetone_phosphate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="sn-glycerol-1-phosphate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0760</html:p> </notes> </reaction> <reaction id="lipids_2.5.1.41_2.5.1.41-RXN" name="lipids_2.5.1.41_2.5.1.41-RXN" reversible="false"> <listOfReactants> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="sn-glycerol-1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="sn-3-O-(geranylgeranyl)glyceryl_1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0051679781"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0259</html:p> </notes> </reaction> <reaction id="lipids_2.5.1.42_2.5.1.42-RXN" name="lipids_2.5.1.42_2.5.1.42-RXN" reversible="false"> <listOfReactants> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="1.0"/> <speciesReference species="sn-3-O-(geranylgeranyl)glyceryl_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,3-bis-O-(geranylgeranyl)glycerol_1-phosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0051679781"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0583</html:p> </notes> </reaction> <reaction id="lipids_1.3.99.34_RXN-14399" name="lipids_1.3.99.34_RXN-14399" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="8.0"/> <speciesReference species="NADH" stoichiometry="8.0"/> <speciesReference species="2,3-bis-O-(geranylgeranyl)glycerol_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol_1-phosphate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="8.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0051679781"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2776</html:p> </notes> </reaction> <reaction id="lipids_2.7.7.67_RXN-14400" name="lipids_2.7.7.67_RXN-14400" reversible="false"> <listOfReactants> <speciesReference species="CTP" stoichiometry="1.0"/> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol_1-phosphate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="saturated_CDP-archaeol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.001603855"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_hydroxyarchaeol" name="lipids_hydroxyarchaeol" reversible="false"> <listOfReactants> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol_1-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0035641232"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_calditol01" name="lipids_calditol01" reversible="true"> <listOfReactants> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-xylo-3-hexulose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0015593032"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_calditol02" name="lipids_calditol02" reversible="true"> <listOfReactants> <speciesReference species="L-xylo-3-hexulose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(2R,3S)-2,3,4,5,6-pentahydroxyhexanal" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0015593032"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_calditol03" name="lipids_calditol03" reversible="true"> <listOfReactants> <speciesReference species="(2R,3S)-2,3,4,5,6-pentahydroxyhexanal" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="(2R,3S,4S,5R)-2,3,4,5-tetrahydroxy-2-(hydroxymethyl)cyclopentan-1-one" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0015593032"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_calditol04" name="lipids_calditol04" reversible="true"> <listOfReactants> <speciesReference species="(2R,3S,4S,5R)-2,3,4,5-tetrahydroxy-2-(hydroxymethyl)cyclopentan-1-one" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="calditol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0015593032"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_calditol05" name="lipids_calditol05" reversible="false"> <listOfReactants> <speciesReference species="calditol" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="calditol_phosphate" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0015593032"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_calditol06" name="lipids_calditol06" reversible="false"> <listOfReactants> <speciesReference species="calditol_phosphate" stoichiometry="1.0"/> <speciesReference species="UTP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="UDP-calditol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0015593032"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_myo-inositol_5.5.1.4_MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN" name="lipids_myo-inositol_5.5.1.4_MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="beta-D-glucose-6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="1D-myo-inositol_(3)-monophosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.001603855"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0330, SSO0886</html:p> </notes> </reaction> <reaction id="lipids_myo-inositol_3.1.3.25_MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN" name="lipids_myo-inositol_3.1.3.25_MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="1D-myo-inositol_(3)-monophosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="myo-inositol" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2418</html:p> </notes> </reaction> <reaction id="lipids_2.7.8.39_RXN-14403" name="lipids_2.7.8.39_RXN-14403" reversible="false"> <listOfReactants> <speciesReference species="saturated_CDP-archaeol" stoichiometry="1.0"/> <speciesReference species="1D-myo-inositol_(3)-monophosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CMP" stoichiometry="1.0"/> <speciesReference species="saturated_archaetidylinositol_phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.001603855"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0556</html:p> </notes> </reaction> <reaction id="lipids_RXN-14404" name="lipids_RXN-14404" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylinositol_phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="saturated_archaetidylinositol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.001603855"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_caldarchaeol-phospholipid-condensation01" name="lipids_caldarchaeol-phospholipid-condensation01" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylinositol" stoichiometry="1.0"/> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_inositolcaldarchaeol" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0001782063"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_2.7.8.8_2.7.8.38_RXN-14405" name="lipids_2.7.8.8_2.7.8.38_RXN-14405" reversible="false"> <listOfReactants> <speciesReference species="saturated_CDP-archaeol" stoichiometry="1.0"/> <speciesReference species="L-serine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CMP" stoichiometry="1.0"/> <speciesReference species="saturated_archaetidylserine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_RXN-14406" name="lipids_RXN-14406" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylserine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="saturated_archaetidylethanolamine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_2.7.8.-_saturated-archaetidylglycerolphosphate-synthase" name="lipids_2.7.8.-_saturated-archaetidylglycerolphosphate-synthase" reversible="true"> <listOfReactants> <speciesReference species="sn-glycerol-1-phosphate" stoichiometry="1.0"/> <speciesReference species="saturated_CDP-archaeol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="saturated_archaetidylglycerolphosphate" stoichiometry="1.0"/> <speciesReference species="CMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_3.1.3.-_saturated-archaetidylglycerolphosphate-phosphatase" name="lipids_3.1.3.-_saturated-archaetidylglycerolphosphate-phosphatase" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylglycerolphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_archaetidylglycerol" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1195</html:p> </notes> </reaction> <reaction id="lipids_glycolipid01" name="lipids_glycolipid01" reversible="false"> <listOfReactants> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="1.0"/> <speciesReference species="UDP-alpha-D-galactose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_archaetidylgalactose" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0005494693"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_glycolipid02" name="lipids_glycolipid02" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylgalactose" stoichiometry="1.0"/> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_archaetidylgalactosylglucose" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0005494693"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_caldarchaeol-glycolipid-condensation01" name="lipids_caldarchaeol-glycolipid-condensation01" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylgalactosylglucose" stoichiometry="1.0"/> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_glycolipidcaldarchaeol" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.000371263"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_sulfocaldarchaeol" name="lipids_sulfocaldarchaeol" reversible="false"> <listOfReactants> <speciesReference species="saturated_glycolipidcaldarchaeol" stoichiometry="1.0"/> <speciesReference species="phosphoadenosine-5'-phosphosulfate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="adenosine_3',5'-bisphosphate" stoichiometry="1.0"/> <speciesReference species="saturated_sulfoglycolipidcaldarchaeol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0002376084"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_glycolipid03" name="lipids_glycolipid03" reversible="false"> <listOfReactants> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="1.0"/> <speciesReference species="UDP-calditol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_archaetidylcalditol" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0015593032"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_glycolipid04" name="lipids_glycolipid04" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylcalditol" stoichiometry="1.0"/> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_archaetidylcalditylglucose" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0015593032"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_caldarchaeol-glycolipid-condensation02" name="lipids_caldarchaeol-glycolipid-condensation02" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylcalditylglucose" stoichiometry="1.0"/> <speciesReference species="2,3-bis-O-phytanyl-sn-glycerol" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_calditolcaldarchaeol" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0003118609"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_caldarchaeol-inositol-glycolipid-condensation01" name="lipids_caldarchaeol-inositol-glycolipid-condensation01" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylgalactosylglucose" stoichiometry="1.0"/> <speciesReference species="saturated_archaetidylinositol" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_inositolglycolipidcaldarchaeol" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0001782063"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="lipids_caldarchaeol-inositol-glycolipid-condensation02" name="lipids_caldarchaeol-inositol-glycolipid-condensation02" reversible="false"> <listOfReactants> <speciesReference species="saturated_archaetidylcalditylglucose" stoichiometry="1.0"/> <speciesReference species="saturated_archaetidylinositol" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="saturated_inositolcalditolcaldarchaeol" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0012474423"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carotenoids_2.5.1.32_2.5.1.32-RXN" name="carotenoids_2.5.1.32_2.5.1.32-RXN" reversible="false"> <listOfReactants> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="prephytoene_diphosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2905</html:p> </notes> </reaction> <reaction id="carotenoids_2.5.1.99_RXNARA-8002" name="carotenoids_2.5.1.99_RXNARA-8002" reversible="false"> <listOfReactants> <speciesReference species="prephytoene_diphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="15-cis-phytoene" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2905</html:p> </notes> </reaction> <reaction id="carotenoids_1.3.99.31_RXN-12414" name="carotenoids_1.3.99.31_RXN-12414" reversible="true"> <listOfReactants> <speciesReference species="15-cis-phytoene" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="4.0"/> <speciesReference species="H+" stoichiometry="4.0"/> </listOfReactants> <listOfProducts> <speciesReference species="all-trans-lycopene" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="4.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2907</html:p> </notes> </reaction> <reaction id="carotenoids_5.5.1.19_BS415669" name="carotenoids_5.5.1.19_BS415669" reversible="true"> <listOfReactants> <speciesReference species="all-trans-lycopene" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-carotene" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2904</html:p> </notes> </reaction> <reaction id="carotenoids_1.14.13.129_RXN1F-152" name="carotenoids_1.14.13.129_RXN1F-152" reversible="true"> <listOfReactants> <speciesReference species="beta-carotene" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="2.0"/> <speciesReference species="oxygen" stoichiometry="2.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="zeaxanthin" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="2.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2906</html:p> </notes> </reaction> <reaction id="carb_eps_2.6.1.16_L-GLN-FRUCT-6-P-AMINOTRANS-RXN" name="carb_eps_2.6.1.16_L-GLN-FRUCT-6-P-AMINOTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-glucosamine-6-phosphate" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0382, SSO1268</html:p> </notes> </reaction> <reaction id="carb_eps_5.4.2.10_5.4.2.10-RXN" name="carb_eps_5.4.2.10_5.4.2.10-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-glucosamine_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-glucosamine-6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0207</html:p> </notes> </reaction> <reaction id="carb_eps_2.3.1.157_2.3.1.157-RXN" name="carb_eps_2.3.1.157_2.3.1.157-RXN" reversible="false"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="D-glucosamine_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="N-acetyl-alpha-D-glucosamine_1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0745</html:p> </notes> </reaction> <reaction id="carb_eps_2.7.7.23_NAG1P-URIDYLTRANS-RXN" name="carb_eps_2.7.7.23_NAG1P-URIDYLTRANS-RXN" reversible="false"> <listOfReactants> <speciesReference species="N-acetyl-alpha-D-glucosamine_1-phosphate" stoichiometry="1.0"/> <speciesReference species="UTP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="UDP-alpha-N-acetyl-D-glucosamine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0745</html:p> </notes> </reaction> <reaction id="polyamines_4.1.1.50_SAMDECARB-RXN" name="polyamines_4.1.1.50_SAMDECARB-RXN" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methioninamine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0012455072"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0585</html:p> </notes> </reaction> <reaction id="polyamines_4.1.1.19_ARGDECARBOX-RXN" name="polyamines_4.1.1.19_ARGDECARBOX-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-arginine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="agmatine" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0007473053"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0536</html:p> </notes> </reaction> <reaction id="polyamines_3.5.3.11_AGMATIN-RXN" name="polyamines_3.5.3.11_AGMATIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="agmatine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="putrescine" stoichiometry="1.0"/> <speciesReference species="urea" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0007473053"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0445, SSO2732</html:p> </notes> </reaction> <reaction id="polyamines_2.5.1.16_SPERMIDINESYN-RXN" name="polyamines_2.5.1.16_SPERMIDINESYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="putrescine" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methioninamine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-methyl-5'-thioadenosine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="spermidine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0007057885"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0757</html:p> </notes> </reaction> <reaction id="polyamines_2.4.2.28_5-METHYLTHIOADENOSINE-PHOSPHORYLASE-RXN" name="polyamines_2.4.2.28_5-METHYLTHIOADENOSINE-PHOSPHORYLASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="S-methyl-5'-thioadenosine" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="adenine" stoichiometry="1.0"/> <speciesReference species="S-methyl-5-thio-alpha-D-ribose_1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0012455072"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2343, SSO2706</html:p> </notes> </reaction> <reaction id="polyamines_2.6.1.-_2.6.1.76_R101-RXN" name="polyamines_2.6.1.-_2.6.1.76_R101-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-2,4-diaminobutanoate" stoichiometry="1.0"/> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="L-aspartate-semialdehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.000352893"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0104, SSO0160, SSO2727</html:p> </notes> </reaction> <reaction id="polyamines_4.1.1.86_4.1.1.86-RXN" name="polyamines_4.1.1.86_4.1.1.86-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-2,4-diaminobutanoate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="propane-1,3-diamine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.000352893"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="polyamines_2.5.1.23_SYM-NORSPERMIDINE-SYNTHASE-RXN" name="polyamines_2.5.1.23_SYM-NORSPERMIDINE-SYNTHASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="propane-1,3-diamine" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methioninamine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="norspermidine" stoichiometry="1.0"/> <speciesReference species="S-methyl-5'-thioadenosine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.000352893"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="polyamines_2.5.1.126_RXN-15698" name="polyamines_2.5.1.126_RXN-15698" reversible="true"> <listOfReactants> <speciesReference species="norspermidine" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methioninamine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="norspermine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="S-methyl-5'-thioadenosine" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0001868257"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0757</html:p> </notes> </reaction> <reaction id="redox_1.5.1.36_FMNREDUCT-RXN_NAD" name="redox_1.5.1.36_FMNREDUCT-RXN_NAD" reversible="true"> <listOfReactants> <speciesReference species="FMNH2" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="FMN" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0006288413"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2055</html:p> </notes> </reaction> <reaction id="redox_1.5.1.36_RXN-13750_WOP" name="redox_1.5.1.36_RXN-13750_WOP" reversible="true"> <listOfReactants> <speciesReference species="FADH2" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="FAD" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440308911"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2055</html:p> </notes> </reaction> <reaction id="redox_1.8.1.9_THIOREDOXIN-REDUCT-NADPH-RXN" name="redox_1.8.1.9_THIOREDOXIN-REDUCT-NADPH-RXN" reversible="true"> <listOfReactants> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="|Red-Thioredoxin|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="|Ox-Thioredoxin|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0125376901"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2416, SSO2765</html:p> </notes> </reaction> <reaction id="redox_1.8.1.14_COA-DISULFIDE-REDUCTASE-NADH-RXN_NAD" name="redox_1.8.1.14_COA-DISULFIDE-REDUCTASE-NADH-RXN_NAD" reversible="false"> <listOfReactants> <speciesReference species="CoA-disulfide" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="2.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2283</html:p> </notes> </reaction> <reaction id="redox_1.8.1.14_COA-DISULFIDE-REDUCTASE-NADH-RXN_NADP" name="redox_1.8.1.14_COA-DISULFIDE-REDUCTASE-NADH-RXN_NADP" reversible="false"> <listOfReactants> <speciesReference species="CoA-disulfide" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="2.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2283</html:p> </notes> </reaction> <reaction id="redox_1.18.1.3_FERREDOXIN--NAD+-REDUCTASE-RXN" name="redox_1.18.1.3_FERREDOXIN--NAD+-REDUCTASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|Reduced-ferredoxins|" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="|Oxidized-ferredoxins|" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.6447211364"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1225</html:p> </notes> </reaction> <reaction id="conversion_4.2.1.1_RXN0-5224" name="conversion_4.2.1.1_RXN0-5224" reversible="true"> <listOfReactants> <speciesReference species="hydrogen_carbonate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0238509595"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1214</html:p> </notes> </reaction> <reaction id="superoxide_1.11.1.1_NADH-PEROXIDASE-RXN" name="superoxide_1.11.1.1_NADH-PEROXIDASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="superoxide_1.11.1.15_BS373387" name="superoxide_1.11.1.15_BS373387" reversible="false"> <listOfReactants> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> <speciesReference species="|Reduced-ferredoxins|" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="2.0"/> <speciesReference species="|Oxidized-ferredoxins|" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2071, SSO2121, SSO2255, SSO2613</html:p> </notes> </reaction> <reaction id="superoxide_1.15.1.1_SUPEROX-DISMUT-RXN" name="superoxide_1.15.1.1_SUPEROX-DISMUT-RXN" reversible="false"> <listOfReactants> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="superoxide" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0316</html:p> </notes> </reaction> <reaction id="superoxide_1.6.3.1_RXN-10745_NAD" name="superoxide_1.6.3.1_RXN-10745_NAD" reversible="false"> <listOfReactants> <speciesReference species="oxygen" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="superoxide_1.6.3.1_RXN-10745_NADP" name="superoxide_1.6.3.1_RXN-10745_NADP" reversible="false"> <listOfReactants> <speciesReference species="oxygen" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="hydrolysis_3.6.1.1_BS383385" name="hydrolysis_3.6.1.1_BS383385" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="2.0"/> <speciesReference species="PPPi" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="3.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004192275"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2390</html:p> </notes> </reaction> <reaction id="hydrolysis_3.6.1.1_INORGPYROPHOSPHAT-RXN" name="hydrolysis_3.6.1.1_INORGPYROPHOSPHAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.2812362065"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2390</html:p> </notes> </reaction> <reaction id="prot_prot-acetate" name="prot_prot-acetate" reversible="false"> <listOfReactants> <speciesReference species="acetic_acid" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="acetate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="prot_prot-glutamate" name="prot_prot-glutamate" reversible="false"> <listOfReactants> <speciesReference species="L-glutamic_acid" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="prot_prot-hydrogen_carbonate" name="prot_prot-hydrogen_carbonate" reversible="false"> <listOfReactants> <speciesReference species="carbonic_acid" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydrogen_carbonate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="prot_prot-phosphate" name="prot_prot-phosphate" reversible="false"> <listOfReactants> <speciesReference species="dihydrogen_phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="prot_prot-citrate" name="prot_prot-citrate" reversible="false"> <listOfReactants> <speciesReference species="citric_acid" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="citrate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="3.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="prot_prot-succinate" name="prot_prot-succinate" reversible="false"> <listOfReactants> <speciesReference species="succinic_acid" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="succinate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="prot_prot-lactate" name="prot_prot-lactate" reversible="false"> <listOfReactants> <speciesReference species="(S)-lactic_acid" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-lactate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-arabinan_unknown-arabinan-hydrolase-extra" name="carb_degra-arabinan_unknown-arabinan-hydrolase-extra" reversible="false"> <listOfReactants> <speciesReference species="Arabinan_ex" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-arabinobiose_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-cellulose_3.2.1.4_cellulase-extra" name="carb_degra-cellulose_3.2.1.4_cellulase-extra" reversible="false"> <listOfReactants> <speciesReference species="cellulose_ex" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cellobiose_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1354, SSO1949, SSO2534</html:p> </notes> </reaction> <reaction id="carb_degra-glycogen_3.2.1.1_3.2.1.3_glycogen-hydrolase-extra" name="carb_degra-glycogen_3.2.1.1_3.2.1.3_glycogen-hydrolase-extra" reversible="false"> <listOfReactants> <speciesReference species="glycogen_ex" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="0.4"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-maltose_ex" stoichiometry="0.4"/> <speciesReference species="maltotriose_ex" stoichiometry="0.4"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0988, SSO0990, SSO1172, SSO2473</html:p> </notes> </reaction> <reaction id="carb_degra-starch_3.2.1.1_3.2.1.3_starch-hydrolase-extra" name="carb_degra-starch_3.2.1.1_3.2.1.3_starch-hydrolase-extra" reversible="false"> <listOfReactants> <speciesReference species="starch_ex" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="0.4"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-maltose_ex" stoichiometry="0.4"/> <speciesReference species="maltotriose_ex" stoichiometry="0.4"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0988, SSO0990, SSO1172, SSO2473</html:p> </notes> </reaction> <reaction id="carb_degra-xylan_3.2.1.8_unknown-xylan-hydrolase-extra" name="carb_degra-xylan_3.2.1.8_unknown-xylan-hydrolase-extra" reversible="false"> <listOfReactants> <speciesReference species="xylan_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(1,4)-beta-xylobiose_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1354</html:p> </notes> </reaction> <reaction id="carb_degra-melezitose_melezitose-thermal-hydrolyzation" name="carb_degra-melezitose_melezitose-thermal-hydrolyzation" reversible="false"> <listOfReactants> <speciesReference species="melezitose_ex" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="turanose_ex" stoichiometry="1.0"/> <speciesReference species="beta-D-glucose_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-glycogen_2.4.1.1_GLYCOPHOSPHORYL-RXN" name="carb_degra-glycogen_2.4.1.1_GLYCOPHOSPHORYL-RXN" reversible="false"> <listOfReactants> <speciesReference species="glycogen" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-glucose_1-phosphate" stoichiometry="1.0"/> <speciesReference species="a_limit_dextrin" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2538</html:p> </notes> </reaction> <reaction id="carb_degra-glycogen_3.2.1.33_3.2.1.33-RXN" name="carb_degra-glycogen_3.2.1.33_3.2.1.33-RXN" reversible="false"> <listOfReactants> <speciesReference species="a_limit_dextrin" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2094</html:p> </notes> </reaction> <reaction id="carb_degra-glycogen-starch_3.2.1.20_RXN0-5183" name="carb_degra-glycogen-starch_3.2.1.20_RXN0-5183" reversible="false"> <listOfReactants> <speciesReference species="maltotriose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="beta-maltose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3051</html:p> </notes> </reaction> <reaction id="carb_degra-reffinose_3.2.1.22_BS115543" name="carb_degra-reffinose_3.2.1.22_BS115543" reversible="false"> <listOfReactants> <speciesReference species="raffinose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="sucrose" stoichiometry="1.0"/> <speciesReference species="beta-D-galactose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3127</html:p> </notes> </reaction> <reaction id="carb_degra-trehalose_trehalose_2.4.1.245_RXN-9603" name="carb_degra-trehalose_trehalose_2.4.1.245_RXN-9603" reversible="true"> <listOfReactants> <speciesReference species="ADP-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="trehalose" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2609</html:p> </notes> </reaction> <reaction id="carb_degra-trehalose_trehalose_2.4.1.245_RXN-9613" name="carb_degra-trehalose_trehalose_2.4.1.245_RXN-9613" reversible="true"> <listOfReactants> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="trehalose" stoichiometry="1.0"/> <speciesReference species="UDP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0015593032"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2609</html:p> </notes> </reaction> <reaction id="carb_degra-trehalose_3.1.4.1_BS402967" name="carb_degra-trehalose_3.1.4.1_BS402967" reversible="false"> <listOfReactants> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UMP" stoichiometry="1.0"/> <speciesReference species="alpha-D-glucose_1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-arabinan_3.2.1.55_arabinan" name="carb_degra-arabinan_3.2.1.55_arabinan" reversible="false"> <listOfReactants> <speciesReference species="L-arabinobiose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-arabinofuranose" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-lactose_3.2.1.B26_BETAGALACTOSID-RXN" name="carb_degra-lactose_3.2.1.B26_BETAGALACTOSID-RXN" reversible="false"> <listOfReactants> <speciesReference species="lactose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-galactose" stoichiometry="1.0"/> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3019</html:p> </notes> </reaction> <reaction id="carb_degra-lactulose_lactulose_3.2.1.B26_lactulose-transgalactosylation" name="carb_degra-lactulose_lactulose_3.2.1.B26_lactulose-transgalactosylation" reversible="true"> <listOfReactants> <speciesReference species="lactose" stoichiometry="1.0"/> <speciesReference species="beta-D-fructofuranose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="lactulose" stoichiometry="1.0"/> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3019</html:p> </notes> </reaction> <reaction id="carb_degra-chitin_3.2.1.52_RXN-12625" name="carb_degra-chitin_3.2.1.52_RXN-12625" reversible="false"> <listOfReactants> <speciesReference species="N,N'-diacetylchitobiose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="N-acetyl-beta-D-glucosamine" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3039</html:p> </notes> </reaction> <reaction id="carb_degra-cellulose_3.2.1.21_3.2.1.52_RXN-10773" name="carb_degra-cellulose_3.2.1.21_3.2.1.52_RXN-10773" reversible="false"> <listOfReactants> <speciesReference species="cellobiose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3019, SSO3039</html:p> </notes> </reaction> <reaction id="carb_degra-cellulose_3.2.1.B26_RXN-10773" name="carb_degra-cellulose_3.2.1.B26_RXN-10773" reversible="false"> <listOfReactants> <speciesReference species="cellobiose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3019</html:p> </notes> </reaction> <reaction id="carb_degra-glycogen-starch-beta-maltose_3.2.1.20_MALTDEG-RXN" name="carb_degra-glycogen-starch-beta-maltose_3.2.1.20_MALTDEG-RXN" reversible="false"> <listOfReactants> <speciesReference species="beta-maltose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3051</html:p> </notes> </reaction> <reaction id="carb_degra-melibiose_3.2.1.22_BS115540" name="carb_degra-melibiose_3.2.1.22_BS115540" reversible="false"> <listOfReactants> <speciesReference species="melibiose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-galactose" stoichiometry="1.0"/> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3127</html:p> </notes> </reaction> <reaction id="carb_degra-sucrose_3.2.1.20_BS370071" name="carb_degra-sucrose_3.2.1.20_BS370071" reversible="false"> <listOfReactants> <speciesReference species="sucrose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-fructofuranose" stoichiometry="1.0"/> <speciesReference species="alpha-D-glucose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3051</html:p> </notes> </reaction> <reaction id="carb_degra-xylan_3.2.1.37_BS369762" name="carb_degra-xylan_3.2.1.37_BS369762" reversible="false"> <listOfReactants> <speciesReference species="(1,4)-beta-xylobiose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-xylopyranose" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3032</html:p> </notes> </reaction> <reaction id="carb_degra-trehalose_3.2.1.28_TREHALA-RXN" name="carb_degra-trehalose_3.2.1.28_TREHALA-RXN" reversible="false"> <listOfReactants> <speciesReference species="trehalose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2754</html:p> </notes> </reaction> <reaction id="carb_degra-D-arabinose_1.1.1.B35_D-arabinose-1-dehydrogenase" name="carb_degra-D-arabinose_1.1.1.B35_D-arabinose-1-dehydrogenase" reversible="false"> <listOfReactants> <speciesReference species="D-arabinofuranose" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-arabinono-1,4-lactone" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1300</html:p> </notes> </reaction> <reaction id="carb_degra-D-arabinose_3.1.1.30_D-ARABINONOLACTONASE-RXN" name="carb_degra-D-arabinose_3.1.1.30_D-ARABINONOLACTONASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-arabinono-1,4-lactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-arabinonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-D-arabinose_4.2.1.9_ARABINONATE-DEHYDRATASE-RXN" name="carb_degra-D-arabinose_4.2.1.9_ARABINONATE-DEHYDRATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-arabinonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydro-3-deoxy-D-arabinonate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3107</html:p> </notes> </reaction> <reaction id="carb_degra-D-arabinose-d-xylose_4.2.1.141_RXN-8777" name="carb_degra-D-arabinose-d-xylose_4.2.1.141_RXN-8777" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-D-arabinonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,5-dioxopentanoate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3118</html:p> </notes> </reaction> <reaction id="carb_degra-arabinose-xylose_1.2.1.26_25-DIOXOVALERATE-DEHYDROGENASE-RXN" name="carb_degra-arabinose-xylose_1.2.1.26_25-DIOXOVALERATE-DEHYDROGENASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="2,5-dioxopentanoate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3117</html:p> </notes> </reaction> <reaction id="carb_degra-L-arabinose_4.2.1.-_L-arabinose" name="carb_degra-L-arabinose_4.2.1.-_L-arabinose" reversible="false"> <listOfReactants> <speciesReference species="L-arabinonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydro-3-deoxy-L-arabinonate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3226</html:p> </notes> </reaction> <reaction id="carb_degra-D-xylose_4.2.1.9_D-xylose" name="carb_degra-D-xylose_4.2.1.9_D-xylose" reversible="false"> <listOfReactants> <speciesReference species="D-xylonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydro-3-deoxy-D-arabinonate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3107</html:p> </notes> </reaction> <reaction id="carb_degra-arabinose-xylose_4.1.2.55_4.1.2.28-RXN" name="carb_degra-arabinose-xylose_4.1.2.55_4.1.2.28-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-D-arabinonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glycolaldehyde" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3197</html:p> </notes> </reaction> <reaction id="carb_degra-L-arabinose_4.2.1.141_4.2.1.43-RXN" name="carb_degra-L-arabinose_4.2.1.141_4.2.1.43-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-L-arabinonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,5-dioxopentanoate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3118</html:p> </notes> </reaction> <reaction id="carb_degra-L-arabinose_4.1.2.55_4.1.2.18-RXN" name="carb_degra-L-arabinose_4.1.2.55_4.1.2.18-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-dehydro-3-deoxy-L-arabinonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glycolaldehyde" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3197</html:p> </notes> </reaction> <reaction id="carb_degra-arabinose-xylose_1.2.1.26_GLYCOLALD-DEHYDROG-RXN" name="carb_degra-arabinose-xylose_1.2.1.26_GLYCOLALD-DEHYDROG-RXN" reversible="false"> <listOfReactants> <speciesReference species="glycolaldehyde" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="glycolate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3117</html:p> </notes> </reaction> <reaction id="carb_degra-arabinose-xylose_1.1.1.26_GLYCOLATE-REDUCTASE-RXN" name="carb_degra-arabinose-xylose_1.1.1.26_GLYCOLATE-REDUCTASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="glycolate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glyoxylate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3187</html:p> </notes> </reaction> <reaction id="carb_degra-L-fucose_1.1.1.B35_BS383221_NAD" name="carb_degra-L-fucose_1.1.1.B35_BS383221_NAD" reversible="false"> <listOfReactants> <speciesReference species="L-fucopyranose" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="D-threo-aldono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.0233769544"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1300</html:p> </notes> </reaction> <reaction id="carb_degra-L-fucose_1.1.1.B35_BS383221_NADP" name="carb_degra-L-fucose_1.1.1.B35_BS383221_NADP" reversible="false"> <listOfReactants> <speciesReference species="L-fucopyranose" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="D-threo-aldono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.1866230456"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1300</html:p> </notes> </reaction> <reaction id="carb_degra-L-fucose_3.1.1.30_fuconolactonase" name="carb_degra-L-fucose_3.1.1.30_fuconolactonase" reversible="false"> <listOfReactants> <speciesReference species="D-threo-aldono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-fuconate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.21"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-L-fucose_4.2.1.68_L-FUCONATE-HYDRATASE-RXN" name="carb_degra-L-fucose_4.2.1.68_L-FUCONATE-HYDRATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-fuconate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="2-dehydro-3-deoxy-L-fuconate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.21"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2998</html:p> </notes> </reaction> <reaction id="carb_degra-galactose_1.1.1.B35_galactose" name="carb_degra-galactose_1.1.1.B35_galactose" reversible="false"> <listOfReactants> <speciesReference species="beta-L-galactose" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="L-galactono-1,5-lactone" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1300</html:p> </notes> </reaction> <reaction id="carb_degra-glucose_4.2.1.9_GLUCONATE-DEHYDRATASE-RXN" name="carb_degra-glucose_4.2.1.9_GLUCONATE-DEHYDRATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-gluconate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydro-3-deoxy-D-gluconate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3107</html:p> </notes> </reaction> <reaction id="carb_degra-galactose_4.2.1.9_GALACTONDEHYDRAT-RXN" name="carb_degra-galactose_4.2.1.9_GALACTONDEHYDRAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-galactonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-dehydro-3-deoxy-D-galactonate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3107</html:p> </notes> </reaction> <reaction id="carb_degra-ribose_1.1.1.B35_BR29181" name="carb_degra-ribose_1.1.1.B35_BR29181" reversible="false"> <listOfReactants> <speciesReference species="D-ribofuranose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="D-Ribonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1300</html:p> </notes> </reaction> <reaction id="carb_degra-sorbitol_1.1.1.14_RXN-7644" name="carb_degra-sorbitol_1.1.1.14_RXN-7644" reversible="true"> <listOfReactants> <speciesReference species="D-sorbitol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="beta-D-fructofuranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3237</html:p> </notes> </reaction> <reaction id="carb_degra-mannose_2.7.1.1_BR47797" name="carb_degra-mannose_2.7.1.1_BR47797" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="D-mannose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="D-mannose_6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-mannose_5.3.1.8_MANNPISOM-RXN" name="carb_degra-mannose_5.3.1.8_MANNPISOM-RXN" reversible="true"> <listOfReactants> <speciesReference species="D-mannose_6-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-fructose-6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2281</html:p> </notes> </reaction> <reaction id="carb_degra-acetate_6.2.1.1_ACETATE--COA-LIGASE-RXN" name="carb_degra-acetate_6.2.1.1_ACETATE--COA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0701978554"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1340, SSO1342, SSO1903, SSO2020, SSO2021, SSO2041, SSO2059, SSO2070, SSO2216, SSO2863, SSO3203, SSO9201</html:p> </notes> </reaction> <reaction id="carb_degra-acetone-isopropanol_1.1.1.1_BS371769" name="carb_degra-acetone-isopropanol_1.1.1.1_BS371769" reversible="true"> <listOfReactants> <speciesReference species="isopropanol" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="acetone" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0472, SSO0764, SSO1220, SSO1646, SSO2334, SSO2441, SSO2494, SSO2501, SSO2536, SSO2717, SSO2800, SSO2878</html:p> </notes> </reaction> <reaction id="carb_degra-acetonitrile_3.5.1.4_R311-RXN" name="carb_degra-acetonitrile_3.5.1.4_R311-RXN" reversible="false"> <listOfReactants> <speciesReference species="acrylamide" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acrylate" stoichiometry="1.0"/> <speciesReference species="ammonia" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2122</html:p> </notes> </reaction> <reaction id="carb_degra-acetoin_2.3.1.190_RXN-9718" name="carb_degra-acetoin_2.3.1.190_RXN-9718" reversible="false"> <listOfReactants> <speciesReference species="(R)-acetoin" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetaldehyde" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1369, SSO1370</html:p> </notes> </reaction> <reaction id="carb_degra-beta-alanine_2.6.1.19_RXN-2901" name="carb_degra-beta-alanine_2.6.1.19_RXN-2901" reversible="false"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="beta-alanine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="malonate_semialdehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2727</html:p> </notes> </reaction> <reaction id="carb_degra-beta-alanine_1.2.1.18_1.2.1.27_RXN-2902" name="carb_degra-beta-alanine_1.2.1.18_1.2.1.27_RXN-2902" reversible="false"> <listOfReactants> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="malonate_semialdehyde" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1218</html:p> </notes> </reaction> <reaction id="carb_degra-beta-alanine_1.2.1.18_1.2.1.27_RXN-9958_NADP" name="carb_degra-beta-alanine_1.2.1.18_1.2.1.27_RXN-9958_NADP" reversible="false"> <listOfReactants> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="malonate_semialdehyde" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1218</html:p> </notes> </reaction> <reaction id="carb_degra-ethanol_1.1.1.1_ALCOHOL-DEHYDROG-RXN" name="carb_degra-ethanol_1.1.1.1_ALCOHOL-DEHYDROG-RXN" reversible="true"> <listOfReactants> <speciesReference species="ethanol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetaldehyde" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0472, SSO0764, SSO1220, SSO1646, SSO2334, SSO2441, SSO2494, SSO2501, SSO2536, SSO2717, SSO2800, SSO2878</html:p> </notes> </reaction> <reaction id="carb_degra-formate-purin_1.2.1.2_1.2.1.2-RXN" name="carb_degra-formate-purin_1.2.1.2_1.2.1.2-RXN" reversible="false"> <listOfReactants> <speciesReference species="formate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0285541226"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1029, SSO2824</html:p> </notes> </reaction> <reaction id="carb_degra-formaldehyde_1.2.7.B2_formaldehyde-oxidation" name="carb_degra-formaldehyde_1.2.7.B2_formaldehyde-oxidation" reversible="false"> <listOfReactants> <speciesReference species="|Oxidized-ferredoxins|" stoichiometry="2.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="formaldehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="formate" stoichiometry="1.0"/> <speciesReference species="|Reduced-ferredoxins|" stoichiometry="2.0"/> <speciesReference species="H+" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0266911812"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2815, SSO2816</html:p> </notes> </reaction> <reaction id="carb_degra-glycerol_2.7.1.30_GLYCEROL-KIN-RXN" name="carb_degra-glycerol_2.7.1.30_GLYCEROL-KIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="glycerol" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="sn-glycerol-3-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1600, SSO2133</html:p> </notes> </reaction> <reaction id="carb_degra-methylglyoxal_1.1.1.-_RXN0-4281" name="carb_degra-methylglyoxal_1.1.1.-_RXN0-4281" reversible="true"> <listOfReactants> <speciesReference species="methylglyoxal" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetol" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2869</html:p> </notes> </reaction> <reaction id="carb_degra-methylglyoxal_4.4.1.5_GLYOXI-RXN" name="carb_degra-methylglyoxal_4.4.1.5_GLYOXI-RXN" reversible="true"> <listOfReactants> <speciesReference species="S-lactoyl-glutathione" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glutathione" stoichiometry="1.0"/> <speciesReference species="methylglyoxal" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2426</html:p> </notes> </reaction> <reaction id="carb_degra-methylglyoxal_3.1.2.6_GLYOXII-RXN" name="carb_degra-methylglyoxal_3.1.2.6_GLYOXII-RXN" reversible="false"> <listOfReactants> <speciesReference species="S-lactoyl-glutathione" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(R)-lactate" stoichiometry="1.0"/> <speciesReference species="glutathione" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3132</html:p> </notes> </reaction> <reaction id="carb_degra-lactate_1.1.1.27_L-LACTATE-DEHYDROGENASE-RXN" name="carb_degra-lactate_1.1.1.27_L-LACTATE-DEHYDROGENASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="(S)-lactate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="1.21"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2585</html:p> </notes> </reaction> <reaction id="carb_degra-phe_1.2.7.8_BS359419" name="carb_degra-phe_1.2.7.8_BS359419" reversible="true"> <listOfReactants> <speciesReference species="|Oxidized-ferredoxins|" stoichiometry="1.0"/> <speciesReference species="keto-phenylpyruvate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phenylacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="|Reduced-ferredoxins|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2067, SSO2069</html:p> </notes> </reaction> <reaction id="carb_degra-lactate_1.1.3.15_BS257489" name="carb_degra-lactate_1.1.3.15_BS257489" reversible="false"> <listOfReactants> <speciesReference species="(R)-lactate" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3163</html:p> </notes> </reaction> <reaction id="carb_degra-lactate_1.1.3.15_BS257487" name="carb_degra-lactate_1.1.3.15_BS257487" reversible="false"> <listOfReactants> <speciesReference species="(S)-lactate" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3163</html:p> </notes> </reaction> <reaction id="carb_degra-parathion_3.1.8.1_ARYLDIALKYL-PHOSPHATASE-RXN" name="carb_degra-parathion_3.1.8.1_ARYLDIALKYL-PHOSPHATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="parathion" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diethylthiophosphate" stoichiometry="1.0"/> <speciesReference species="4-nitrophenol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2522</html:p> </notes> </reaction> <reaction id="carb_degra-paraoxon_3.1.8.1_RXN-8746" name="carb_degra-paraoxon_3.1.8.1_RXN-8746" reversible="false"> <listOfReactants> <speciesReference species="paraoxon" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="diethylphosphate" stoichiometry="1.0"/> <speciesReference species="4-nitrophenol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2522</html:p> </notes> </reaction> <reaction id="carb_degra-pheac_1.14.13.149_RXN0-2042" name="carb_degra-pheac_1.14.13.149_RXN0-2042" reversible="false"> <listOfReactants> <speciesReference species="oxygen" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="phenylacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1312</html:p> </notes> </reaction> <reaction id="carb_degra-pheac_5.3.3.18_RXN0-6510" name="carb_degra-pheac_5.3.3.18_RXN0-6510" reversible="true"> <listOfReactants> <speciesReference species="2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-oxepin-2(3H)-ylideneacetyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2514</html:p> </notes> </reaction> <reaction id="carb_degra-pheac_3.3.2.12_RXNMETA-12671" name="carb_degra-pheac_3.3.2.12_RXNMETA-12671" reversible="false"> <listOfReactants> <speciesReference species="2-oxepin-2(3H)-ylideneacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-oxo-5,6-didehydrosuberyl-CoA_semialdehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1154</html:p> </notes> </reaction> <reaction id="carb_degra-pheac_1.17.1.7_RXNMETA-12672" name="carb_degra-pheac_1.17.1.7_RXNMETA-12672" reversible="false"> <listOfReactants> <speciesReference species="3-oxo-5,6-didehydrosuberyl-CoA_semialdehyde" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="3-oxo-5,6-didehydrosuberyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-pheac_2.3.1.223_RXN0-6512" name="carb_degra-pheac_2.3.1.223_RXN0-6512" reversible="false"> <listOfReactants> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="3-oxo-5,6-didehydrosuberyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,3-didehydroadipyl-CoA" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2377</html:p> </notes> </reaction> <reaction id="carb_degra-pheac_4.2.1.17_RXN0-6513" name="carb_degra-pheac_4.2.1.17_RXN0-6513" reversible="true"> <listOfReactants> <speciesReference species="3-hydroxyadipyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,3-didehydroadipyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0050, SSO0654, SSO1311, SSO2017, SSO2514, SSO2535, SSO2623, SSO2624</html:p> </notes> </reaction> <reaction id="carb_degra-pheac_1.1.1.35_RXN0-2044" name="carb_degra-pheac_1.1.1.35_RXN0-2044" reversible="true"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="3-hydroxyadipyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="3-oxoadipyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2514</html:p> </notes> </reaction> <reaction id="carb_degra-pheac_2.3.1.174_RXN-3641" name="carb_degra-pheac_2.3.1.174_RXN-3641" reversible="false"> <listOfReactants> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="3-oxoadipyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="succinyl-CoA" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2377</html:p> </notes> </reaction> <reaction id="carb_degra-phenol_1.14.13.7_BS375240" name="carb_degra-phenol_1.14.13.7_BS375240" reversible="true"> <listOfReactants> <speciesReference species="phenol" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="catechol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1228</html:p> </notes> </reaction> <reaction id="carb_degra-phenol_1.13.11.2_CATECHOL-23-DIOXYGENASE-RXN" name="carb_degra-phenol_1.13.11.2_CATECHOL-23-DIOXYGENASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="catechol" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1223, SSO2054</html:p> </notes> </reaction> <reaction id="carb_degra-phenol_3.7.1.9_3.7.1.9-RXN" name="carb_degra-phenol_3.7.1.9_3.7.1.9-RXN" reversible="false"> <listOfReactants> <speciesReference species="(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="formate" stoichiometry="1.0"/> <speciesReference species="2-oxopent-4-enoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0102</html:p> </notes> </reaction> <reaction id="carb_degra-phenol_4.2.1.80_2-OXOPENT-4-ENOATE-HYDRATASE-RXN" name="carb_degra-phenol_4.2.1.80_2-OXOPENT-4-ENOATE-HYDRATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxopent-4-enoate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-hydroxy-2-oxopentanoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-phenol_4.1.3.39_MHPELY-RXN" name="carb_degra-phenol_4.1.3.39_MHPELY-RXN" reversible="true"> <listOfReactants> <speciesReference species="4-hydroxy-2-oxopentanoate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetaldehyde" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-hydroxypheac_1.14.14.9_RXN-8505" name="carb_degra-hydroxypheac_1.14.14.9_RXN-8505" reversible="false"> <listOfReactants> <speciesReference species="FADH2" stoichiometry="1.0"/> <speciesReference species="4-hydroxyphenylacetate" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3,4-dihydroxyphenylacetate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="FAD" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2053</html:p> </notes> </reaction> <reaction id="carb_degra-hydroxypheac_4.1.1.68_CARBOXY-OXOHEPT-ENEDIOATE-DECARBOXY-RXN" name="carb_degra-hydroxypheac_4.1.1.68_CARBOXY-OXOHEPT-ENEDIOATE-DECARBOXY-RXN" reversible="false"> <listOfReactants> <speciesReference species="5-carboxy-2-oxohept-3-enedioate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="2-hydroxyhepta-2,4-dienedioate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2520</html:p> </notes> </reaction> <reaction id="carb_degra-propanol_1.1.1.1_RXN-13198" name="carb_degra-propanol_1.1.1.1_RXN-13198" reversible="true"> <listOfReactants> <speciesReference species="n-propanol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="propanal" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0472, SSO0764, SSO1220, SSO1646, SSO2334, SSO2441, SSO2494, SSO2501, SSO2536, SSO2717, SSO2800, SSO2878</html:p> </notes> </reaction> <reaction id="carb_degra-propanol_1.2.1.3_BS189122" name="carb_degra-propanol_1.2.1.3_BS189122" reversible="true"> <listOfReactants> <speciesReference species="propanal" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="propionate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3117</html:p> </notes> </reaction> <reaction id="carb_degra-propanol_6.2.1.1_R00925" name="carb_degra-propanol_6.2.1.1_R00925" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="propionate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="propanoyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1340, SSO1342, SSO1903, SSO2020, SSO2021, SSO2041, SSO2059, SSO2070, SSO2216, SSO2863, SSO3203, SSO9201</html:p> </notes> </reaction> <reaction id="carb_degra-ribose_2.7.1.15_RIBOKIN-RXN" name="carb_degra-ribose_2.7.1.15_RIBOKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="alpha-D-ribofuranose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="D-ribose-5-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0004, SSO2449</html:p> </notes> </reaction> <reaction id="carb_degra-ribose_5.4.99.-_RXN0-5304" name="carb_degra-ribose_5.4.99.-_RXN0-5304" reversible="true"> <listOfReactants> <speciesReference species="beta-D-ribofuranose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-ribopyranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0393</html:p> </notes> </reaction> <reaction id="carb_degra-toluene_1.14.13.-_TOLUENE-3-MONOOXYGENASE-RXN" name="carb_degra-toluene_1.14.13.-_TOLUENE-3-MONOOXYGENASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="toluene" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-methylphenol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1227, SSO1228, SSO1233</html:p> </notes> </reaction> <reaction id="carb_degra-toluene_1.14.13.-_M-CRESOL-METHYLCATECHOL-RXN" name="carb_degra-toluene_1.14.13.-_M-CRESOL-METHYLCATECHOL-RXN" reversible="false"> <listOfReactants> <speciesReference species="4-methylphenol" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-methylcatechol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1227, SSO1228, SSO1233</html:p> </notes> </reaction> <reaction id="carb_degra-toluene_RXN-8041" name="carb_degra-toluene_RXN-8041" reversible="false"> <listOfReactants> <speciesReference species="4-methylcatechol" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cis,cis-2-hydroxy-6-oxohepta-2,4-dienoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-toluene_3.7.1.-_2-OH-6-OXOHEPTA-2-4-DIENOATE-HYDR-RXN" name="carb_degra-toluene_3.7.1.-_2-OH-6-OXOHEPTA-2-4-DIENOATE-HYDR-RXN" reversible="false"> <listOfReactants> <speciesReference species="cis,cis-2-hydroxy-6-oxohepta-2,4-dienoate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="2-oxopent-4-enoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra_1.2.1.26_R01752" name="carb_degra_1.2.1.26_R01752" reversible="true"> <listOfReactants> <speciesReference species="D-glyceraldehyde" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-glycerate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-10.4068728889"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3117</html:p> </notes> </reaction> <reaction id="carb_degra_1.2.1.26_RXN66-3" name="carb_degra_1.2.1.26_RXN66-3" reversible="false"> <listOfReactants> <speciesReference species="acetaldehyde" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0004282432"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3117</html:p> </notes> </reaction> <reaction id="carb_degra_6.2.1.13_ACETATE--COA-LIGASE-ADP-FORMING-RXN" name="carb_degra_6.2.1.13_ACETATE--COA-LIGASE-ADP-FORMING-RXN" reversible="false"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1806</html:p> </notes> </reaction> <reaction id="carb_degra_6.2.1.13_PROPANOATECOA-LIGASE-RXN" name="carb_degra_6.2.1.13_PROPANOATECOA-LIGASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="propionate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="propanoyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1806</html:p> </notes> </reaction> <reaction id="carb_degra_3-hydroxybutanoyl-CoA-hydrolysis_3.1.2.4_RXN-14251" name="carb_degra_3-hydroxybutanoyl-CoA-hydrolysis_3.1.2.4_RXN-14251" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="(S)-3-hydroxybutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="(S)-3-hydroxybutanoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2514</html:p> </notes> </reaction> <reaction id="carb_degra-arg_ureacyc_3.5.3.6_ARGININE-DEIMINASE-RXN" name="carb_degra-arg_ureacyc_3.5.3.6_ARGININE-DEIMINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-arginine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="L-citrulline" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1148</html:p> </notes> </reaction> <reaction id="carb_degra-arg_3.5.1.4_GUANIDINOBUTANAMIDE-NH3-RXN" name="carb_degra-arg_3.5.1.4_GUANIDINOBUTANAMIDE-NH3-RXN" reversible="false"> <listOfReactants> <speciesReference species="4-guanidinobutyramide" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="4-guanidinobutyrate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2122</html:p> </notes> </reaction> <reaction id="carb_degra-asn_3.5.1.1_ASPARAGHYD-RXN" name="carb_degra-asn_3.5.1.1_ASPARAGHYD-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-asparagine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2350</html:p> </notes> </reaction> <reaction id="carb_degra-asn_1.4.3.16_BS258998" name="carb_degra-asn_1.4.3.16_BS258998" reversible="false"> <listOfReactants> <speciesReference species="L-aspartate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="oxaloacetate" stoichiometry="1.0"/> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0997</html:p> </notes> </reaction> <reaction id="carb_degra-cys_thiamin_2.8.1.7_RXN0-308" name="carb_degra-cys_thiamin_2.8.1.7_RXN0-308" reversible="false"> <listOfReactants> <speciesReference species="L-cysteine" stoichiometry="1.0"/> <speciesReference species="|L-Cysteine-Desulfurases|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-alanine" stoichiometry="1.0"/> <speciesReference species="|Persulfurated-L-cysteine-desulfurases|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="9.0156e-06"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2215</html:p> </notes> </reaction> <reaction id="carb_degra-gln_1.4.1.13_GLUTAMATESYN-RXN" name="carb_degra-gln_1.4.1.13_GLUTAMATESYN-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="2.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0684</html:p> </notes> </reaction> <reaction id="carb_degra-glu_2.6.1.19_GABATRANSAM-RXN" name="carb_degra-glu_2.6.1.19_GABATRANSAM-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="4-aminobutyrate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-glutamate" stoichiometry="1.0"/> <speciesReference species="succinate_semialdehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2727</html:p> </notes> </reaction> <reaction id="carb_degra-glu_1.1.1.95_BS187992" name="carb_degra-glu_1.1.1.95_BS187992" reversible="true"> <listOfReactants> <speciesReference species="2-oxoglutarate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-hydroxyglutarate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0905</html:p> </notes> </reaction> <reaction id="carb_degra-glu_2.8.3.12_RXN-1082" name="carb_degra-glu_2.8.3.12_RXN-1082" reversible="false"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="(R)-2-hydroxyglutarate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(R)-2-hydroxyglutaryl-CoA" stoichiometry="1.0"/> <speciesReference species="acetate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1083, SSO1085</html:p> </notes> </reaction> <reaction id="carb_degra-glu_4.2.1.-_RXN-1083" name="carb_degra-glu_4.2.1.-_RXN-1083" reversible="false"> <listOfReactants> <speciesReference species="(R)-2-hydroxyglutaryl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(E)-glutaconyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3226</html:p> </notes> </reaction> <reaction id="carb_degra-glu_4.1.1.70_GLUTACONYL-COA-DECARBOXYLASE-RXN" name="carb_degra-glu_4.1.1.70_GLUTACONYL-COA-DECARBOXYLASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="(E)-glutaconyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="crotonyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO12093</html:p> </notes> </reaction> <reaction id="carb_degra-gly_1.8.1.4_1.4.4.2_2.1.2.10_GCVMULTI-RXN" name="carb_degra-gly_1.8.1.4_1.4.4.2_2.1.2.10_GCVMULTI-RXN" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="tetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="glycine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="5,10-methylenetetrahydrosulfopterin" stoichiometry="1.0"/> <speciesReference species="ammonium" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0917, SSO0918, SSO0919, SSO1123, SSO1524, SSO1565, SSO2559</html:p> </notes> </reaction> <reaction id="carb_degra-orn_4.3.1.12_ORNITHINE-CYCLODEAMINASE-RXN" name="carb_degra-orn_4.3.1.12_ORNITHINE-CYCLODEAMINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-ornithine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonium" stoichiometry="1.0"/> <speciesReference species="L-proline" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0138225084"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0378</html:p> </notes> </reaction> <reaction id="carb_degra-thr_4.3.1.19_THREDEHYD-RXN" name="carb_degra-thr_4.3.1.19_THREDEHYD-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-threonine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-oxobutanoate" stoichiometry="1.0"/> <speciesReference species="ammonia" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0248</html:p> </notes> </reaction> <reaction id="carb_degra-shikimate_4.2.1.-_4.2.1.118_DHSHIKIMATE-DEHYDRO-RXN" name="carb_degra-shikimate_4.2.1.-_4.2.1.118_DHSHIKIMATE-DEHYDRO-RXN" reversible="false"> <listOfReactants> <speciesReference species="3-dehydroshikimate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="protocatechuate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3226</html:p> </notes> </reaction> <reaction id="carb_degra-ser_2.6.1.51_SERINE--PYRUVATE-AMINOTRANSFERASE-RXN" name="carb_degra-ser_2.6.1.51_SERINE--PYRUVATE-AMINOTRANSFERASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="L-serine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-alanine" stoichiometry="1.0"/> <speciesReference species="hydroxypyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2597</html:p> </notes> </reaction> <reaction id="carb_degra-ser_1.1.1.26_R01388" name="carb_degra-ser_1.1.1.26_R01388" reversible="true"> <listOfReactants> <speciesReference species="D-glycerate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydroxypyruvate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3187</html:p> </notes> </reaction> <reaction id="carb_degra-lys_1.8.1.4_2-KETO-ADIPATE-DEHYDROG-RXN" name="carb_degra-lys_1.8.1.4_2-KETO-ADIPATE-DEHYDROG-RXN" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="2-oxoadipate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="glutaryl-CoA" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1123, SSO1524, SSO1565, SSO2559</html:p> </notes> </reaction> <reaction id="carb_degra-lys_GLUTARYL-COA-DEHYDROG-RXN" name="carb_degra-lys_GLUTARYL-COA-DEHYDROG-RXN" reversible="true"> <listOfReactants> <speciesReference species="FAD" stoichiometry="1.0"/> <speciesReference species="glutaryl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(E)-glutaconyl-CoA" stoichiometry="1.0"/> <speciesReference species="FADH2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-val_1.2.1.25_1.2.1.25-RXN" name="carb_degra-val_1.2.1.25_1.2.1.25-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-oxoisovalerate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="isobutanoyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440308911"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-val_1.3.8.-_MEPROPCOA-FAD-RXN" name="carb_degra-val_1.3.8.-_MEPROPCOA-FAD-RXN" reversible="false"> <listOfReactants> <speciesReference species="FAD" stoichiometry="1.0"/> <speciesReference species="isobutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="methylacrylyl-CoA" stoichiometry="1.0"/> <speciesReference species="FADH2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440308911"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="carb_degra-val_4.2.1.17_METHYLACYLYLCOA-HYDROXY-RXN" name="carb_degra-val_4.2.1.17_METHYLACYLYLCOA-HYDROXY-RXN" reversible="true"> <listOfReactants> <speciesReference species="(S)-3-hydroxy-isobutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="methylacrylyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.6440308911"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0050, SSO0654, SSO1311, SSO2017, SSO2514, SSO2535, SSO2623, SSO2624</html:p> </notes> </reaction> <reaction id="carb_degra-val_3.1.2.4_3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN" name="carb_degra-val_3.1.2.4_3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="(S)-3-hydroxy-isobutanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-3-hydroxy-isobutanoate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440308911"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2514</html:p> </notes> </reaction> <reaction id="carb_degra-val_1.1.1.31_3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN" name="carb_degra-val_1.1.1.31_3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="(S)-3-hydroxy-isobutanoate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="(S)-methylmalonate-semialdehyde" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440308911"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0974, SSO1560</html:p> </notes> </reaction> <reaction id="carb_degra-val_1.2.1.27_RXN-11213" name="carb_degra-val_1.2.1.27_RXN-11213" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="(S)-methylmalonate-semialdehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydrogen_carbonate" stoichiometry="1.0"/> <speciesReference species="propanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.6440308911"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1218</html:p> </notes> </reaction> <reaction id="carb_degra-leu_1.2.1.-_2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN" name="carb_degra-leu_1.2.1.-_2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="4-methyl-2-oxopentanoate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="isovaleryl-CoA" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0155</html:p> </notes> </reaction> <reaction id="carb_degra-leu_1.3.8.7_RXN-14264" name="carb_degra-leu_1.3.8.7_RXN-14264" reversible="true"> <listOfReactants> <speciesReference species="FAD" stoichiometry="1.0"/> <speciesReference species="isovaleryl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-methylcrotonyl-CoA" stoichiometry="1.0"/> <speciesReference species="FADH2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2877</html:p> </notes> </reaction> <reaction id="carb_degra-leu_6.4.1.4_METHYLCROTONYL-COA-CARBOXYLASE-RXN" name="carb_degra-leu_6.4.1.4_METHYLCROTONYL-COA-CARBOXYLASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="3-methylcrotonyl-CoA" stoichiometry="1.0"/> <speciesReference species="hydrogen_carbonate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ADP" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="3-methylglutaconyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2466</html:p> </notes> </reaction> <reaction id="carb_degra-leu_4.2.1.18_METHYLGLUTACONYL-COA-HYDRATASE-RXN" name="carb_degra-leu_4.2.1.18_METHYLGLUTACONYL-COA-HYDRATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="(S)-3-hydroxy-3-methylglutaryl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-methylglutaconyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2514</html:p> </notes> </reaction> <reaction id="carb_degra-ile_1.2.1.-_2KETO-3METHYLVALERATE-RXN" name="carb_degra-ile_1.2.1.-_2KETO-3METHYLVALERATE-RXN" reversible="false"> <listOfReactants> <speciesReference species="(S)-3-methyl-2-oxopentanoate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="2-methylbutanoyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0155</html:p> </notes> </reaction> <reaction id="carb_degra-ile_1.3.8.5_2-METHYLACYL-COA-DEHYDROGENASE-RXN" name="carb_degra-ile_1.3.8.5_2-METHYLACYL-COA-DEHYDROGENASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="FAD" stoichiometry="1.0"/> <speciesReference species="2-methylbutanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(E)-2-methylcrotonoyl-CoA" stoichiometry="1.0"/> <speciesReference species="FADH2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2877</html:p> </notes> </reaction> <reaction id="carb_degra-ile_4.2.1.17_TIGLYLCOA-HYDROXY-RXN" name="carb_degra-ile_4.2.1.17_TIGLYLCOA-HYDROXY-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-methyl-3-hydroxybutyryl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(E)-2-methylcrotonoyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0050, SSO0654, SSO1311, SSO2017, SSO2514, SSO2535, SSO2623, SSO2624</html:p> </notes> </reaction> <reaction id="carb_degra-ile_1.1.1.35_1.1.1.178-RXN" name="carb_degra-ile_1.1.1.35_1.1.1.178-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-methyl-3-hydroxybutyryl-CoA" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="2-methylacetoacetyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2514</html:p> </notes> </reaction> <reaction id="carb_degra-ile_2.3.1.9_METHYLACETOACETYLCOATHIOL-RXN" name="carb_degra-ile_2.3.1.9_METHYLACETOACETYLCOATHIOL-RXN" reversible="true"> <listOfReactants> <speciesReference species="2-methylacetoacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="propanoyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2061, SSO2062, SSO2377, SSO2496, SSO2625, SSO2874</html:p> </notes> </reaction> <reaction id="spontaneous_H2O-dissociation" name="spontaneous_H2O-dissociation" reversible="true"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="OH-" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.5645876489"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_H2O-dissociation_ex" name="spontaneous_H2O-dissociation_ex" reversible="true"> <listOfReactants> <speciesReference species="H2O_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+_ex" stoichiometry="1.0"/> <speciesReference species="OH-_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_RXN-8315" name="spontaneous_RXN-8315" reversible="true"> <listOfReactants> <speciesReference species="sulfite" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="bisulfite" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_RXN-11811" name="spontaneous_RXN-11811" reversible="true"> <listOfReactants> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonium" stoichiometry="1.0"/> <speciesReference species="OH-" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.5645876489"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_RXN-11811-ex" name="spontaneous_RXN-11811-ex" reversible="true"> <listOfReactants> <speciesReference species="ammonia_ex" stoichiometry="1.0"/> <speciesReference species="H2O_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonium_ex" stoichiometry="1.0"/> <speciesReference species="OH-_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_RXN-12753" name="spontaneous_RXN-12753" reversible="false"> <listOfReactants> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-NADHX" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_RXN-12754" name="spontaneous_RXN-12754" reversible="false"> <listOfReactants> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(R)-NADHX" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_RXN-10639" name="spontaneous_RXN-10639" reversible="false"> <listOfReactants> <speciesReference species="alpha-D-glucose_1-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose_1-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_SPONTPRO-RXN" name="spontaneous_SPONTPRO-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-glutamate_gamma-semialdehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-1-pyrroline-5-carboxylate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_4.2.1.104_RXN0-5222" name="spontaneous_4.2.1.104_RXN0-5222" reversible="false"> <listOfReactants> <speciesReference species="carbamate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_5.1.3.3_ALDOSE-1-EPIMERASE-RXN" name="spontaneous_5.1.3.3_ALDOSE-1-EPIMERASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="alpha-D-glucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="beta-D-glucose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0166</html:p> </notes> </reaction> <reaction id="spontaneous_5_5.4.99_RXN0-5305" name="spontaneous_5_5.4.99_RXN0-5305" reversible="true"> <listOfReactants> <speciesReference species="beta-D-ribofuranose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="alpha-D-ribofuranose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_biotin-carboxyl-carrier-protein-assembly_RXN-7101" name="spontaneous_biotin-carboxyl-carrier-protein-assembly_RXN-7101" reversible="false"> <listOfReactants> <speciesReference species="|BCCP-biotin-monomers|" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="|BCCP-dimers|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_formaldehyde-oxidation-II-(glutathione-dependent)_4.4.1.22_RXN-2961" name="spontaneous_formaldehyde-oxidation-II-(glutathione-dependent)_4.4.1.22_RXN-2961" reversible="true"> <listOfReactants> <speciesReference species="S-hydroxymethylglutathione" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="formaldehyde" stoichiometry="1.0"/> <speciesReference species="glutathione" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_lactate-biosynthesis_3-dehydroquinate-biosynthesis_RXN-10054" name="spontaneous_lactate-biosynthesis_3-dehydroquinate-biosynthesis_RXN-10054" reversible="false"> <listOfReactants> <speciesReference species="enolaldehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="methylglyoxal" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_1.11.1.11_RXN-12440" name="spontaneous_no-pathway_1.11.1.11_RXN-12440" reversible="false"> <listOfReactants> <speciesReference species="L-ascorbate" stoichiometry="1.0"/> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-dehydro-ascorbate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_pyroglutamate-formation" name="spontaneous_no-pathway_pyroglutamate-formation" reversible="false"> <listOfReactants> <speciesReference species="L-glutamate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-oxoproline" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_pyroglutamate-formation-ex" name="spontaneous_no-pathway_pyroglutamate-formation-ex" reversible="false"> <listOfReactants> <speciesReference species="L-glutamate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="5-oxoproline_ex" stoichiometry="1.0"/> <speciesReference species="H2O_ex" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-12861" name="spontaneous_no-pathway_RXN-12861" reversible="false"> <listOfReactants> <speciesReference species="dehydroascorbate_(bicyclic_form)" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,3-dioxo-L-gulonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-12862" name="spontaneous_no-pathway_RXN-12862" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="L-dehydro-ascorbate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dehydroascorbate_(bicyclic_form)" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-12864" name="spontaneous_no-pathway_RXN-12864" reversible="false"> <listOfReactants> <speciesReference species="glutathione" stoichiometry="4.0"/> <speciesReference species="selenite" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glutathione_disulfide" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="3.0"/> <speciesReference species="selenodiglutathione" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-12869" name="spontaneous_no-pathway_RXN-12869" reversible="false"> <listOfReactants> <speciesReference species="dehydroascorbate_(bicyclic_form)" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="cyclic-2,3-O-oxalyl-L-threonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-12870" name="spontaneous_no-pathway_RXN-12870" reversible="false"> <listOfReactants> <speciesReference species="2,3-dioxo-L-gulonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-carboxy-L-xylonolactone" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-12871" name="spontaneous_no-pathway_RXN-12871" reversible="false"> <listOfReactants> <speciesReference species="2-carboxy-L-xylonolactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-carboxy-L-threo-pentonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-12872" name="spontaneous_no-pathway_RXN-12872" reversible="false"> <listOfReactants> <speciesReference species="cyclic-2,3-O-oxalyl-L-threonate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="cyclic-_3,4-O-oxalyl-L-threonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-14056" name="spontaneous_no-pathway_RXN-14056" reversible="true"> <listOfReactants> <speciesReference species="(R)-methylmalonate-semialdehyde" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="(S)-methylmalonate-semialdehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="spontaneous_no-pathway_RXN-14813" name="spontaneous_no-pathway_RXN-14813" reversible="true"> <listOfReactants> <speciesReference species="aldehydo-L-fucose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-fucose" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="tRNA_6.1.1.1_TYROSINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.1_TYROSINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-tyrosine" stoichiometry="1.0"/> <speciesReference species="|TYR-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-TYR-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0078</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.2_TRYPTOPHAN--TRNA-LIGASE-RXN" name="tRNA_6.1.1.2_TRYPTOPHAN--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-tryptophan" stoichiometry="1.0"/> <speciesReference species="|TRP-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-TRP-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0452</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.3_THREONINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.3_THREONINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-threonine" stoichiometry="1.0"/> <speciesReference species="|THR-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-THR-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0384, SSO2486</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.4_LEUCINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.4_LEUCINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-leucine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|LEU-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-LEU-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0504, SSO0589</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.5_ISOLEUCINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.5_ISOLEUCINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-isoleucine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|ILE-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-ILE-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0722</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.6_LYSINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.6_LYSINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-lysine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|LYS-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-LYS-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0090</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.7_ALANINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.7_ALANINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-alanine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|ALA-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-ALA-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0341</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.9_VALINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.9_VALINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-valine" stoichiometry="1.0"/> <speciesReference species="|VAL-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-VAL-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0899</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.10_METHIONINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.10_METHIONINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-methionine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|MET-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-MET-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0558, SSO0627</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.11_SERINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.11_SERINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-serine" stoichiometry="1.0"/> <speciesReference species="|SER-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-SER-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0602</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.12_ASPARTATE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.12_ASPARTATE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|ASP-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-ASP-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0173</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.14_GLYCINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.14_GLYCINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="glycine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|GLY-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-GLY-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0444</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.15_PROLINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.15_PROLINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-proline" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|PRO-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-PRO-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0569</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.16_CYSTEINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.16_CYSTEINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-cysteine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|CYS-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-CYS-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2280</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.18_GLUTAMINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.18_GLUTAMINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-glutamine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|GLN-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-GLN-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0093</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.19_ARGININE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.19_ARGININE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="L-arginine" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|ARG-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-ARG-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0857</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.20_PHENYLALANINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.20_PHENYLALANINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-phenylalanine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|PHE-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-PHE-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0100, SSO0101</html:p> </notes> </reaction> <reaction id="tRNA_6.1.1.21_HISTIDINE--TRNA-LIGASE-RXN" name="tRNA_6.1.1.21_HISTIDINE--TRNA-LIGASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="L-histidine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="|HIS-tRNAs|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="|Charged-HIS-tRNAs|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0279</html:p> </notes> </reaction> <reaction id="other_lactate-biosynthesis_3-dehydroquinate-biosynthesis_RXN-8075" name="other_lactate-biosynthesis_3-dehydroquinate-biosynthesis_RXN-8075" reversible="false"> <listOfReactants> <speciesReference species="D-glyceraldehyde-3-phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> <speciesReference species="enolaldehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="other_phenylmercury-acetate-degradation_1.16.1.1_MERCURY-II-REDUCTASE-RXN" name="other_phenylmercury-acetate-degradation_1.16.1.1_MERCURY-II-REDUCTASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="Hg2+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="Hg0" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2689</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.6.1.7_BS165362" name="other_no-pathway_3.6.1.7_BS165362" reversible="false"> <listOfReactants> <speciesReference species="1,3-bisphospho-D-glycerate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-phospho-D-glycerate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0887</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.6.1.7_BS165360" name="other_no-pathway_3.6.1.7_BS165360" reversible="false"> <listOfReactants> <speciesReference species="acetylphosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0887</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.6.1.7_BS93363" name="other_no-pathway_3.6.1.7_BS93363" reversible="false"> <listOfReactants> <speciesReference species="carbamoyl-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="carbamate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0887</html:p> </notes> </reaction> <reaction id="other_multiple-pathways_1.1.1.22_UGD-RXN" name="other_multiple-pathways_1.1.1.22_UGD-RXN" reversible="false"> <listOfReactants> <speciesReference species="NAD+" stoichiometry="2.0"/> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="NADH" stoichiometry="2.0"/> <speciesReference species="UDP-D-glucuronate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0810</html:p> </notes> </reaction> <reaction id="other_no-pathway_1.8.1.5_1.8.1.5-RXN" name="other_no-pathway_1.8.1.5_1.8.1.5-RXN" reversible="true"> <listOfReactants> <speciesReference species="NADP+" stoichiometry="1.0"/> <speciesReference species="acetoacetate" stoichiometry="1.0"/> <speciesReference species="coenzyme_M" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="2-oxopropyl-CoM" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1225</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.3.1.9_RXN-12561" name="other_no-pathway_2.3.1.9_RXN-12561" reversible="true"> <listOfReactants> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="propanoyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="beta-ketovaleryl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2061, SSO2062, SSO2377, SSO2496, SSO2625, SSO2874</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.2.1.127_3.2.1.127-RXN" name="other_no-pathway_3.2.1.127_3.2.1.127-RXN" reversible="true"> <listOfReactants> <speciesReference species="|Immunoglobulin-G-Glycopeptides|" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-fucopyranose" stoichiometry="1.0"/> <speciesReference species="|Immunoglobulin-G-Glycopeptides-fragments|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="other_no-pathway_2.7.8.23_RXN-10827" name="other_no-pathway_2.7.8.23_RXN-10827" reversible="false"> <listOfReactants> <speciesReference species="carboxyphosphonoenolpyruvate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="carboxyphosphinopyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2587</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.5.1.46_RXN-13414" name="other_no-pathway_2.5.1.46_RXN-13414" reversible="true"> <listOfReactants> <speciesReference species="spermidine" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="dehydrospermidine" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0967</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.3.1.48_HISTONE-ACETYLTRANSFERASE-RXN" name="other_no-pathway_2.3.1.48_HISTONE-ACETYLTRANSFERASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="|Histones|" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="|Acetylated-histones|" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0480</html:p> </notes> </reaction> <reaction id="other_jasmonic-acid-biosynthesis_2.3.1.16_RXN-10701" name="other_jasmonic-acid-biosynthesis_2.3.1.16_RXN-10701" reversible="false"> <listOfReactants> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="OPC4-3-ketoacyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="jasmonoyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2377</html:p> </notes> </reaction> <reaction id="other_no-pathway_6.2.1.3_LINOLENOYL-RXN" name="other_no-pathway_6.2.1.3_LINOLENOYL-RXN" reversible="true"> <listOfReactants> <speciesReference species="linolenoyl-CoA" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="alpha-linolenate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0369, SSO2510, SSO2523, SSO2875, SSO3064</html:p> </notes> </reaction> <reaction id="other_no-pathway_6.2.1.3_RXN-13614" name="other_no-pathway_6.2.1.3_RXN-13614" reversible="false"> <listOfReactants> <speciesReference species="caprate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="decanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0369, SSO2510, SSO2523, SSO2875, SSO3064</html:p> </notes> </reaction> <reaction id="other_no-pathway_6.2.1.3_RXN-9623" name="other_no-pathway_6.2.1.3_RXN-9623" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="palmitate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="palmitoyl-CoA" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0369, SSO2510, SSO2523, SSO2875, SSO3064</html:p> </notes> </reaction> <reaction id="other_no-pathway_6.2.1.3_RXN-9644" name="other_no-pathway_6.2.1.3_RXN-9644" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="oleate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="oleoyl-CoA" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0369, SSO2510, SSO2523, SSO2875, SSO3064</html:p> </notes> </reaction> <reaction id="other_no-pathway_6.2.1.3_RXN-9673" name="other_no-pathway_6.2.1.3_RXN-9673" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="linoleate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="linoleoyl-CoA" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0369, SSO2510, SSO2523, SSO2875, SSO3064</html:p> </notes> </reaction> <reaction id="other_no-pathway_6.2.1.3_RXN66-480" name="other_no-pathway_6.2.1.3_RXN66-480" reversible="false"> <listOfReactants> <speciesReference species="phytenate" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phytenoyl-CoA" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0369, SSO2510, SSO2523, SSO2875, SSO3064</html:p> </notes> </reaction> <reaction id="other_no-pathway_6.2.1.3_RXN66-484" name="other_no-pathway_6.2.1.3_RXN66-484" reversible="false"> <listOfReactants> <speciesReference species="pristanate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="ATP" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="pristanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> <speciesReference species="AMP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0369, SSO2510, SSO2523, SSO2875, SSO3064</html:p> </notes> </reaction> <reaction id="other_octane-oxidation_6.2.1.3_R223-RXN" name="other_octane-oxidation_6.2.1.3_R223-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="octanoate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="AMP" stoichiometry="1.0"/> <speciesReference species="octanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0369, SSO2510, SSO2523, SSO2875, SSO3064</html:p> </notes> </reaction> <reaction id="other_protocatechuate-degradation-II-(ortho-cleavage-pathway)_4.1.1.44_4-CARBOXYMUCONOLACTONE-DECARBOXYLASE-RXN" name="other_protocatechuate-degradation-II-(ortho-cleavage-pathway)_4.1.1.44_4-CARBOXYMUCONOLACTONE-DECARBOXYLASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-carboxy-5-oxo-2,5-dihydrofuran-2-acetate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-oxoadipate_enol_lactone" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2884</html:p> </notes> </reaction> <reaction id="other_metabolism-of-degradation_3.5.1.87_BS189995" name="other_metabolism-of-degradation_3.5.1.87_BS189995" reversible="false"> <listOfReactants> <speciesReference species="N-carbamoyl-L-methionine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-methionine" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="ammonia" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2719</html:p> </notes> </reaction> <reaction id="other_metabolism-of-degradation_3.5.1.87_BS389254" name="other_metabolism-of-degradation_3.5.1.87_BS389254" reversible="false"> <listOfReactants> <speciesReference species="N-carbamoyl-L-alanine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-alanine" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="ammonia" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2719</html:p> </notes> </reaction> <reaction id="other_metabolism-of-degradation_3.5.1.14_BS140645" name="other_metabolism-of-degradation_3.5.1.14_BS140645" reversible="false"> <listOfReactants> <speciesReference species="N-Acetyl-L-aspartate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="L-aspartate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="other_no-pathway_1.1.5.3_GLYC3PDEHYDROG-RXN" name="other_no-pathway_1.1.5.3_GLYC3PDEHYDROG-RXN" reversible="true"> <listOfReactants> <speciesReference species="sn-glycerol-3-phosphate" stoichiometry="1.0"/> <speciesReference species="representative_quinone" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="representative_quinol" stoichiometry="1.0"/> <speciesReference species="dihydroxyacetone_phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-1.27346e-05"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2526, SSO2643</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.5.1.32_RXN1F-144" name="other_no-pathway_2.5.1.32_RXN1F-144" reversible="true"> <listOfReactants> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="all-trans-phytoene" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="2.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2905</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.8.1.2_BS141612" name="other_no-pathway_3.8.1.2_BS141612" reversible="false"> <listOfReactants> <speciesReference species="chloroacetate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glycolate" stoichiometry="1.0"/> <speciesReference species="HCl" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0726, SSO1896, SSO2028, SSO2159</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.8.1.2_BS141613" name="other_no-pathway_3.8.1.2_BS141613" reversible="false"> <listOfReactants> <speciesReference species="bromoacetate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glycolate" stoichiometry="1.0"/> <speciesReference species="HBr" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0726, SSO1896, SSO2028, SSO2159</html:p> </notes> </reaction> <reaction id="other_no-pathway_4.1.3.6_CITLY-RXN" name="other_no-pathway_4.1.3.6_CITLY-RXN" reversible="false"> <listOfReactants> <speciesReference species="citrate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="oxaloacetate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1254</html:p> </notes> </reaction> <reaction id="other_no-pathway_1.1.3.15_BS257485" name="other_no-pathway_1.1.3.15_BS257485" reversible="false"> <listOfReactants> <speciesReference species="glycolate" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glyoxylate" stoichiometry="1.0"/> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3163</html:p> </notes> </reaction> <reaction id="other_no-pathway_5.3.4.1_BS368701" name="other_no-pathway_5.3.4.1_BS368701" reversible="false"> <listOfReactants> <speciesReference species="L-ascorbate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="2.0"/> <speciesReference species="L-dehydro-ascorbate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0192</html:p> </notes> </reaction> <reaction id="other_no-pathway_1.8.4.11_1.8.4.13-RXN" name="other_no-pathway_1.8.4.11_1.8.4.13-RXN" reversible="false"> <listOfReactants> <speciesReference species="|Red-Thioredoxin|" stoichiometry="1.0"/> <speciesReference species="L-methionine-(S)-S-oxide" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-methionine" stoichiometry="1.0"/> <speciesReference species="|Ox-Thioredoxin|" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1503</html:p> </notes> </reaction> <reaction id="other_pyruvate-oxidation-pathway_1.2.5.1_RXN-11496" name="other_pyruvate-oxidation-pathway_1.2.5.1_RXN-11496" reversible="false"> <listOfReactants> <speciesReference species="pyruvate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="representative_quinone" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="representative_quinol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2962</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.2.1.51_ALPHA-L-FUCOSIDASE-RXN" name="other_no-pathway_3.2.1.51_ALPHA-L-FUCOSIDASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="alpha-L-fucoside" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-fucopyranose" stoichiometry="1.0"/> <speciesReference species="ethanol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO11867, SSO3060</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.1.3.41_4-NITROPHENYLPHOSPHATASE-RXN" name="other_no-pathway_3.1.3.41_4-NITROPHENYLPHOSPHATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="4-nitrophenyl_phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-nitrophenol" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2355</html:p> </notes> </reaction> <reaction id="other_photorespiration_3.1.3.18_GPH-RXN" name="other_photorespiration_3.1.3.18_GPH-RXN" reversible="false"> <listOfReactants> <speciesReference species="2-phosphoglycolate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glycolate" stoichiometry="1.0"/> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0094, SSO2157</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.1.1.45_CARBOXYMETHYLENEBUTENOLIDASE-RXN" name="other_no-pathway_3.1.1.45_CARBOXYMETHYLENEBUTENOLIDASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="cis-dienelactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2-maleylacetate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2087</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.1.1.2_BS115376" name="other_no-pathway_3.1.1.2_BS115376" reversible="false"> <listOfReactants> <speciesReference species="4-nitrophenyl_butyrate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-nitrophenol" stoichiometry="1.0"/> <speciesReference species="n-butanoate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="other_no-pathway_3.1.1.2_BS12514" name="other_no-pathway_3.1.1.2_BS12514" reversible="false"> <listOfReactants> <speciesReference species="p-nitrophenyl_acetate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-nitrophenol" stoichiometry="1.0"/> <speciesReference species="acetate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="other_no-pathway_3.1.1.2_BS363949" name="other_no-pathway_3.1.1.2_BS363949" reversible="false"> <listOfReactants> <speciesReference species="dibutyrin" stoichiometry="1.0"/> <speciesReference species="n-butanoate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="tributyrin" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="other_multiple-pathways_3.1.1.1_BS321404" name="other_multiple-pathways_3.1.1.1_BS321404" reversible="true"> <listOfReactants> <speciesReference species="ethanol" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ethylacetate" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2493, SSO2517, SSO2518</html:p> </notes> </reaction> <reaction id="other_thiosulfate-disproportionation-III-(rhodanese)_2.8.1.1_THIOSULFATE-SULFURTRANSFERASE-RXN" name="other_thiosulfate-disproportionation-III-(rhodanese)_2.8.1.1_THIOSULFATE-SULFURTRANSFERASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="hydrogen_cyanide" stoichiometry="1.0"/> <speciesReference species="thiosulfate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="thiocyanate" stoichiometry="1.0"/> <speciesReference species="sulfite" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1019, SSO1817</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.7.8.23_2.7.8.23-RXN" name="other_no-pathway_2.7.8.23_2.7.8.23-RXN" reversible="false"> <listOfReactants> <speciesReference species="carboxyphosphonoenolpyruvate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphinopyruvate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2587</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.7.8.23_RXN-10828" name="other_no-pathway_2.7.8.23_RXN-10828" reversible="false"> <listOfReactants> <speciesReference species="carboxyphosphinopyruvate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphinopyruvate" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2587</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.7.8.15_R05969" name="other_no-pathway_2.7.8.15_R05969" reversible="true"> <listOfReactants> <speciesReference species="UDP-alpha-N-acetyl-D-glucosamine" stoichiometry="1.0"/> <speciesReference species="dolichyl_phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UMP" stoichiometry="1.0"/> <speciesReference species="N-acetyl-D-glucosaminyl-diphosphodolichol" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0060</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.7.1.119_HYGROMYCIN-B-KINASE-RXN" name="other_no-pathway_2.7.1.119_HYGROMYCIN-B-KINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1.0"/> <speciesReference species="hygromycin-B" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="7''-O-phosphohygromycin_B" stoichiometry="1.0"/> <speciesReference species="ADP" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="other_no-pathway_2.4.1.83_2.4.1.83-RXN" name="other_no-pathway_2.4.1.83_2.4.1.83-RXN" reversible="true"> <listOfReactants> <speciesReference species="dolichyl_phosphate" stoichiometry="1.0"/> <speciesReference species="GDP-alpha-D-mannose" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="GDP" stoichiometry="1.0"/> <speciesReference species="dolichyl_beta-D-mannosyl_phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3241</html:p> </notes> </reaction> <reaction id="other_multiple-pathways_2.3.2.2_BS370350" name="other_multiple-pathways_2.3.2.2_BS370350" reversible="true"> <listOfReactants> <speciesReference species="N-(4-nitrophenyl)-L-alpha-glutamine" stoichiometry="1.0"/> <speciesReference species="glutathione" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-nitroaniline" stoichiometry="1.0"/> <speciesReference species="5-L-glutamyl-glutathione" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3216</html:p> </notes> </reaction> <reaction id="other_multiple-pathways_2.3.2.2_R00494" name="other_multiple-pathways_2.3.2.2_R00494" reversible="true"> <listOfReactants> <speciesReference species="glutathione" 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name="other_no-pathway_2.3.1.16_RXN-14277" reversible="true"> <listOfReactants> <speciesReference species="hexanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="3-oxooctanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2377</html:p> </notes> </reaction> <reaction id="other_multiple-pathways_2.3.1.16_R00829" name="other_multiple-pathways_2.3.1.16_R00829" reversible="true"> <listOfReactants> <speciesReference species="succinyl-CoA" stoichiometry="1.0"/> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="3-oxoadipyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2377</html:p> </notes> </reaction> <reaction id="other_threonine-degradation-III-(to-methylglyoxal)_1.4.3.21_AMACETOXID-RXN" name="other_threonine-degradation-III-(to-methylglyoxal)_1.4.3.21_AMACETOXID-RXN" reversible="false"> <listOfReactants> <speciesReference species="aminoacetone" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> <speciesReference species="methylglyoxal" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1692</html:p> </notes> </reaction> <reaction id="other_multiple-pathways_1.4.3.21_BS259130" name="other_multiple-pathways_1.4.3.21_BS259130" reversible="false"> <listOfReactants> <speciesReference species="tyramine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="4-hydroxyaceto-phenone" stoichiometry="1.0"/> <speciesReference 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<speciesReference species="hydrogen_peroxide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1692</html:p> </notes> </reaction> <reaction id="other_multiple-pathways_1.4.3.21_BS259107" name="other_multiple-pathways_1.4.3.21_BS259107" reversible="false"> <listOfReactants> <speciesReference species="benzylamine" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="oxygen" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="benzaldehyde" stoichiometry="1.0"/> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference 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species="hydrogen_peroxide" stoichiometry="1.0"/> <speciesReference species="phenylacetaldehyde" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1692</html:p> </notes> </reaction> <reaction id="other_metabolism-of-degradation_1.3.1.32_MALEYLACETATE-REDUCTASE-RXN_NAD" name="other_metabolism-of-degradation_1.3.1.32_MALEYLACETATE-REDUCTASE-RXN_NAD" reversible="false"> <listOfReactants> <speciesReference species="2-maleylacetate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference 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<speciesReference species="phenylacetyl-CoA" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2627</html:p> </notes> </reaction> <reaction id="other_nicotinate-degradation_5.2.1.1_MALEATE-ISOMERASE-RXN" name="other_nicotinate-degradation_5.2.1.1_MALEATE-ISOMERASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="maleate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="fumarate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> 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id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2673</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.5.1.25_3.5.1.80-RXN" name="other_no-pathway_3.5.1.25_3.5.1.80-RXN" reversible="false"> <listOfReactants> <speciesReference species="N-acetyl-D-galactosamine-6-phosphate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetate" stoichiometry="1.0"/> <speciesReference species="D-galactosamine-6-phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2673</html:p> </notes> </reaction> <reaction id="other_metabolism-of-degradation_3.5.1.14_BS370039" name="other_metabolism-of-degradation_3.5.1.14_BS370039" reversible="false"> <listOfReactants> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="N-alpha-acetyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="L-methionine" stoichiometry="1.0"/> <speciesReference species="acetate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="other_L-idonate-degradation_1.1.1.69_GLUCONATE-5-DEHYDROGENASE-RXN_NAD" name="other_L-idonate-degradation_1.1.1.69_GLUCONATE-5-DEHYDROGENASE-RXN_NAD" reversible="false"> <listOfReactants> <speciesReference species="5-dehydro-D-gluconate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-gluconate" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2289</html:p> </notes> </reaction> <reaction id="other_L-idonate-degradation_1.1.1.69_GLUCONATE-5-DEHYDROGENASE-RXN_NADP" name="other_L-idonate-degradation_1.1.1.69_GLUCONATE-5-DEHYDROGENASE-RXN_NADP" reversible="false"> <listOfReactants> <speciesReference species="5-dehydro-D-gluconate" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-gluconate" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2289</html:p> </notes> </reaction> <reaction id="other_no-pathway_1.97.1.9_BS375300" name="other_no-pathway_1.97.1.9_BS375300" reversible="true"> <listOfReactants> <speciesReference species="selenate" stoichiometry="1.0"/> <speciesReference species="H2" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="selenite" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2794</html:p> </notes> </reaction> <reaction id="other_adenosylcobalamin-biosynthesis-II-(late-cobalt-incorporation)_2.1.1.132_2.1.1.132-RXN" name="other_adenosylcobalamin-biosynthesis-II-(late-cobalt-incorporation)_2.1.1.132_2.1.1.132-RXN" reversible="false"> <listOfReactants> <speciesReference species="precorrin-6B" stoichiometry="1.0"/> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-adenosyl-L-homocysteine" stoichiometry="2.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="precorrin-8x" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2303</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.4.1.117_2.4.1.117-RXN" name="other_no-pathway_2.4.1.117_2.4.1.117-RXN" reversible="true"> <listOfReactants> <speciesReference species="UDP-alpha-D-glucose" stoichiometry="1.0"/> <speciesReference species="dolichyl_phosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="UDP" stoichiometry="1.0"/> <speciesReference species="dolichyl_beta-D-glucosyl_phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO12256</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.5.1.32_2.5.1.32-RXN" name="other_no-pathway_2.5.1.32_2.5.1.32-RXN" reversible="false"> <listOfReactants> <speciesReference species="geranylgeranyl_diphosphate" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="prephytoene_diphosphate" stoichiometry="1.0"/> <speciesReference species="diphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2905</html:p> </notes> </reaction> <reaction id="other_no-pathway_2.8.3.16_RXN0-1382" name="other_no-pathway_2.8.3.16_RXN0-1382" reversible="false"> <listOfReactants> <speciesReference species="formyl-CoA" stoichiometry="1.0"/> <speciesReference species="oxalate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="formate" stoichiometry="1.0"/> <speciesReference species="oxalyl-CoA" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3144</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.3.2.1_ISOCHORMAT-RXN" name="other_no-pathway_3.3.2.1_ISOCHORMAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="isochorismate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="2,3-dihydroxy-2,3-dihydrobenzoate" stoichiometry="1.0"/> <speciesReference species="pyruvate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2455</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.5.99.2_THIAMINASE-RXN" name="other_no-pathway_3.5.99.2_THIAMINASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="thiamin" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="hydroxymethylpyrimidine" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="4-methyl-5-(beta-hydroxyethyl)thiazole" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2598</html:p> </notes> </reaction> <reaction id="other_no-pathway_3.8.1.2_BS141614" name="other_no-pathway_3.8.1.2_BS141614" reversible="false"> <listOfReactants> <speciesReference species="iodoacetate" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="glycolate" stoichiometry="1.0"/> <speciesReference species="iodide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0726, SSO1896, SSO2028, SSO2159</html:p> </notes> </reaction> <reaction id="other_beta-D-glucuronide-and-D-glucuronate-degradation_3.2.1.31_BS410988" name="other_beta-D-glucuronide-and-D-glucuronate-degradation_3.2.1.31_BS410988" reversible="false"> <listOfReactants> <speciesReference species="retinyl-beta-glucuronide" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="all-trans-retinol" stoichiometry="1.0"/> <speciesReference species="D-glucuronide" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO3036</html:p> </notes> </reaction> <reaction id="other_multiple-pathways_3.5.1.4_NICOTINAMID-RXN" name="other_multiple-pathways_3.5.1.4_NICOTINAMID-RXN" reversible="false"> <listOfReactants> <speciesReference species="nicotinamide" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="nicotinate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2122</html:p> </notes> </reaction> <reaction id="other_no-pathway_1.2.1.24_RXN0-5293_NAD" name="other_no-pathway_1.2.1.24_RXN0-5293_NAD" reversible="false"> <listOfReactants> <speciesReference species="succinate_semialdehyde" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="succinate" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1629, SSO3117</html:p> </notes> </reaction> <reaction id="other_no-pathway_1.2.1.79_RXN0-5293_NADP" name="other_no-pathway_1.2.1.79_RXN0-5293_NADP" reversible="false"> <listOfReactants> <speciesReference species="succinate_semialdehyde" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="succinate" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1842</html:p> </notes> </reaction> <reaction id="other_galactose-degradation-I_3.1.1.25_GALACTONOLACTONASE-RXN" name="other_galactose-degradation-I_3.1.1.25_GALACTONOLACTONASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="D-galactono-1,4-lactone" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-galactonate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2522</html:p> </notes> </reaction> <reaction id="other_no-pathway_1.1.1.14_L-IDITOL-2-DEHYDROGENASE-RXN" name="other_no-pathway_1.1.1.14_L-IDITOL-2-DEHYDROGENASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="L-iditol" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="L-sorbose" 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</kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2122</html:p> </notes> </reaction> <reaction id="other_indole-glucosinolate-breakdown_indole-3-acetate-biosynthesis_3.5.5.1_R07855" name="other_indole-glucosinolate-breakdown_indole-3-acetate-biosynthesis_3.5.5.1_R07855" reversible="false"> <listOfReactants> <speciesReference species="phenylacetonitrile" stoichiometry="1.0"/> <speciesReference species="H2O" stoichiometry="2.0"/> </listOfReactants> <listOfProducts> <speciesReference species="ammonia" stoichiometry="1.0"/> <speciesReference species="phenylacetate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO2122</html:p> </notes> </reaction> <reaction id="other_adenosine-5'-monophosphate-recycling_5.3.1.29_RXN-8801" name="other_adenosine-5'-monophosphate-recycling_5.3.1.29_RXN-8801" reversible="false"> <listOfReactants> <speciesReference species="ribose-1,5-bisphosphate" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="D-ribulose-1,5-bisphosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO0436</html:p> </notes> </reaction> <reaction id="other_2,4-dinitrotoluene-degradation_valine-degradation_1.2.1.27_BR29389" name="other_2,4-dinitrotoluene-degradation_valine-degradation_1.2.1.27_BR29389" reversible="false"> <listOfReactants> <speciesReference species="malonate_semialdehyde" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="NADP+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="acetyl-CoA" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADPH" stoichiometry="1.0"/> <speciesReference species="H+" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1218</html:p> </notes> </reaction> <reaction id="other_2,4-dinitrotoluene-degradation_valine-degradation_1.2.1.27_BS189112" name="other_2,4-dinitrotoluene-degradation_valine-degradation_1.2.1.27_BS189112" reversible="false"> <listOfReactants> <speciesReference species="methylmalonate_semialdehyde" stoichiometry="1.0"/> <speciesReference species="coenzyme_A" stoichiometry="1.0"/> <speciesReference species="NAD+" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="H+" stoichiometry="1.0"/> <speciesReference species="propanoyl-CoA" stoichiometry="1.0"/> <speciesReference species="CO2" stoichiometry="1.0"/> <speciesReference species="NADH" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes> <html:p>GENE_ASSOCIATIONS: SSO1218</html:p> </notes> </reaction> <reaction id="other_homoserine-lactone_2.5.1.4_ADENOSYLMETHIONINE-CYCLOTRANSFERASE-RXN" name="other_homoserine-lactone_2.5.1.4_ADENOSYLMETHIONINE-CYCLOTRANSFERASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="S-adenosyl-L-methionine" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="S-methyl-5'-thioadenosine" stoichiometry="1.0"/> <speciesReference species="L-homoserine_lactone" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_flux_phosphate" name="T_flux_phosphate" reversible="true"> <listOfReactants> <speciesReference species="phosphate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts/> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="-0.0519436908"/> </listOfParameters> </kineticLaw> <notes/> </reaction> <reaction id="T_trans_phosphate" name="T_trans_phosphate" reversible="false"> <listOfReactants> <speciesReference species="phosphate_ex" stoichiometry="1.0"/> </listOfReactants> <listOfProducts> <speciesReference species="phosphate" stoichiometry="1.0"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <ci> FLUX_VALUE </ci> </math> <listOfParameters> <parameter id="LOWER_BOUND" units="mmol_per_gDW_per_hr" value="-0.0"/> <parameter id="OBJECTIVE_COEFFICIENT" value="0.0"/> <parameter id="FLUX_VALUE" units="mmol_per_gDW_per_hr" value="0.0519436908"/> </listOfParameters> </kineticLaw> <notes/> </reaction> </listOfReactions> </model> </sbml>