<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1"> <model id="kolodkin3" name="kolodkin3" substanceUnits="nmol" timeUnits="min" volumeUnits="L" extentUnits="nMol"> <listOfFunctionDefinitions> <functionDefinition id="TR" name="TR"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> Kapf </ci> </bvar> <bvar> <ci> Cvar </ci> </bvar> <bvar> <ci> Kapb </ci> </bvar> <bvar> <ci> Nvar </ci> </bvar> <apply> <minus/> <apply> <times/> <ci> Cvar </ci> <ci> Kapf </ci> </apply> <apply> <times/> <ci> Kapb </ci> <ci> Nvar </ci> </apply> </apply> </lambda> </math> </functionDefinition> </listOfFunctionDefinitions> <listOfUnitDefinitions> <unitDefinition metaid="metaid_0" id="nmol" name="nmol"> <listOfUnits> <unit kind="mole" exponent="1" scale="-9" multiplier="1"/> </listOfUnits> </unitDefinition> <unitDefinition metaid="metaid_1" id="L" name="L"> <listOfUnits> <unit kind="litre" exponent="1" scale="0" multiplier="1"/> </listOfUnits> </unitDefinition> <unitDefinition metaid="metaid_2" id="min" name="min"> <listOfUnits> <unit kind="second" exponent="1" scale="0" multiplier="60"/> </listOfUnits> </unitDefinition> <unitDefinition metaid="metaid_3" id="nMol" name="nM"> <listOfUnits> <unit kind="mole" exponent="1" scale="-9" multiplier="1"/> <unit kind="litre" exponent="-1" scale="0" multiplier="1"/> </listOfUnits> </unitDefinition> </listOfUnitDefinitions> <listOfCompartments> <compartment metaid="metaid_4" sboTerm="SBO:0000410" id="default_compartment" spatialDimensions="3" size="1" constant="true"/> </listOfCompartments> <listOfSpecies> <species metaid="metaid_5" id="Lc" compartment="default_compartment" initialConcentration="0.005" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false"/> <species metaid="metaid_6" id="Ln_" name="Ln" compartment="default_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> <species metaid="metaid_7" id="NRLc" compartment="default_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> <species metaid="metaid_8" id="NRLm" compartment="default_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> <species metaid="metaid_9" id="NRLn" compartment="default_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> <species metaid="metaid_10" id="NRc" compartment="default_compartment" initialConcentration="42" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> <species metaid="metaid_11" id="NRm" compartment="default_compartment" initialConcentration="42" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> <species metaid="metaid_12" id="NRn" compartment="default_compartment" initialConcentration="83.25" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> <species metaid="metaid_13" id="RE" compartment="default_compartment" initialConcentration="3.7" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> <species metaid="metaid_14" id="REL" compartment="default_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> </listOfSpecies> <listOfParameters> <parameter metaid="metaid_15" id="EXTERNAL" value="0" constant="false"/> <parameter metaid="metaid_16" id="Kapb" value="3.24e-11" constant="false"/> <parameter metaid="metaid_17" id="Kapb4" value="3.6" constant="false"/> <parameter metaid="metaid_18" id="Kapb5" value="3.6" constant="false"/> <parameter metaid="metaid_19" id="Kapf" value="3.24e-11" constant="false"/> <parameter metaid="metaid_20" id="Kapf4" value="3.6" constant="false"/> <parameter metaid="metaid_21" id="Kapf5" value="3.6" constant="false"/> <parameter metaid="metaid_22" id="Vcytosol" value="1.55e-12" constant="false"/> <parameter metaid="metaid_23" id="Vnucleus" value="4.5e-13" constant="false"/> <parameter metaid="metaid_24" id="k1" value="60" constant="false"/> <parameter metaid="metaid_25" id="k12" value="60" constant="false"/> <parameter metaid="metaid_26" id="k13" value="60" constant="false"/> <parameter metaid="metaid_27" id="k16" value="60" constant="false"/> <parameter metaid="metaid_28" id="k2" value="60" constant="false"/> <parameter metaid="metaid_29" id="k22" value="60" constant="false"/> <parameter metaid="metaid_30" id="k23" value="60" constant="false"/> <parameter metaid="metaid_31" id="k26" value="60" constant="false"/> </listOfParameters> <listOfReactions> <reaction metaid="metaid_35" id="v_1" name="v_1" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_32" species="NRLn" stoichiometry="1" constant="true"/> <speciesReference metaid="metaid_33" species="RE" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_34" species="REL" stoichiometry="1" constant="true"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <minus/> <apply> <times/> <ci> k1 </ci> <ci> NRLn </ci> <ci> RE </ci> </apply> <apply> <times/> <ci> k2 </ci> <ci> REL </ci> </apply> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_38" id="v_2" name="v_2" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_36" species="Lc" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_37" species="Ln_" stoichiometry="1" constant="true"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <ci> TR </ci> <ci> Kapf </ci> <ci> Lc </ci> <ci> Kapb </ci> <ci> Ln_ </ci> </apply> <ci> Vnucleus </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_42" id="v_3" name="v_3" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_39" species="Ln_" stoichiometry="1" constant="true"/> <speciesReference metaid="metaid_40" species="NRn" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_41" species="NRLn" stoichiometry="1" constant="true"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <plus/> <apply> <minus/> <apply> <times/> <ci> k22 </ci> <ci> NRLn </ci> </apply> </apply> <apply> <times/> <ci> k12 </ci> <ci> Ln_ </ci> <ci> NRn </ci> </apply> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_46" id="v_4" name="v_4" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_43" species="NRm" stoichiometry="1" constant="true"/> <speciesReference metaid="metaid_44" species="Ln_" stoichiometry="3.44444444444" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_45" species="NRLm" stoichiometry="1" constant="true"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vnucleus </ci> <apply> <plus/> <apply> <minus/> <apply> <times/> <ci> k23 </ci> <ci> NRLm </ci> </apply> </apply> <apply> <times/> <ci> k13 </ci> <ci> Ln_ </ci> <ci> NRm </ci> </apply> </apply> </apply> <ci> Vcytosol </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_49" id="v_5" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_47" species="NRc" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_48" species="NRm" stoichiometry="1" constant="true"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <ci> TR </ci> <ci> Kapf4 </ci> <ci> NRc </ci> <ci> Kapb4 </ci> <ci> NRm </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_52" id="v_6" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_50" species="NRLc" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_51" species="NRLm" stoichiometry="1" constant="true"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <ci> TR </ci> <ci> Kapf5 </ci> <ci> NRLc </ci> <ci> Kapb5 </ci> <ci> NRLm </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_63" id="v_7" name="v_7" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_53" species="NRc" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_54" species="NRLc" stoichiometry="1" constant="true"/> </listOfProducts> <listOfModifiers> <modifierSpeciesReference metaid="metaid_55" species="NRLn"/> <modifierSpeciesReference metaid="metaid_56" species="RE"/> <modifierSpeciesReference metaid="metaid_57" species="Ln_"/> <modifierSpeciesReference metaid="metaid_58" species="NRm"/> <modifierSpeciesReference metaid="metaid_59" species="REL"/> <modifierSpeciesReference metaid="metaid_60" species="NRn"/> <modifierSpeciesReference metaid="metaid_61" species="NRLm"/> <modifierSpeciesReference metaid="metaid_62" species="Lc"/> </listOfModifiers> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <plus/> <apply> <minus/> <apply> <times/> <ci> k16 </ci> <ci> Lc </ci> <ci> NRc </ci> </apply> <apply> <times/> <ci> k26 </ci> <ci> NRLc </ci> </apply> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRLn </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> RE </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> Ln_ </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRn </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRm </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRc </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRLc </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> REL </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRLm </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRLn </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> RE </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> Ln_ </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRn </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRm </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRc </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRLc </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> REL </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <ci> NRLm </ci> </apply> </apply> </math> </kineticLaw> </reaction> </listOfReactions> </model> </sbml>