in fact, it uses citrate, but here it is revised to iso-citrate

for the purposes of model reduction the reaction was revised from ... + Pyrophosphate to ... + 2*Orthophosphate

lumped reaction EC 2.4.2.14 + EC 6.3.4.13 + EC 2.1.2.- + EC 6.3.5.3 + EC 6.3.3.1 + EC 4.1.1.21 + EC 6.3.2.6 + EC 4.3.2.2

the reacton lumped with EC 1.8.1.7 Glutathione Reductase

lumped reaction EC 2.1.3.3 + EC 6.3.4.5 + EC 4.3.2.1

lumped reactions (EC2.7.1.5 + EC3.1.3.- + EC3.2.1.2) from Phosphogluco-amylopectin down to Maltose

The ratio is derived from own allometric measurements in experiments [root_gFW/(root_gFW + shoot_gFW)] average root fresh biomass = 1.36 ± 0.53 gFW (n = 19) average shoot fresh biomass = 7.45 ± 1.81 gFW (n = 19)

CIS [2.3.3.1] + ACO [4.2.1.3]

lumped reaction EC 2.5.1.54 + EC 4.2.3.4 + EC 4.2.1.10 + EC 1.1.1.25 + EC 1.1.1.282 + EC 2.7.1.71 + EC 2.5.1.19 + EC 4.2.3.5

transfering electron from cytochrome b6/f complex of photosystem II

redox-regulated and inactivated by oxidation

beta-fructofuranosidase

non-cyclic photosynthesis

cyclic electron flow, cyclic photosynthesis

lumped reactions [EC 6.3.3.2 + EC 3.5.4.9 + EC 6.3.4.3 + EC 1.2.1.2]

lumped reaction EC 1.1.1.205 + EC 6.3.5.2

lumped reaction EC 2.4.2.17 + EC 3.6.1.31 + EC 3.5.4.19 + EC 5.3.1.16 + EC 2.4.2.- + EC 4.2.1.19 + EC 2.6.1.9 + EC 3.1.3.15 + EC 1.1.1.23

lumped reaction EC 2.7.2.4 + EC 1.2.1.11 + EC 1.1.1.3

cytosolic IDH

mitochondrial IDH

lumped reaction EC 4.3.1.19 + EC 2.2.1.6 + EC 1.1.1.86 + EC 4.2.1.9 + EC 2.6.1.42

lumped reaction EC 2.1.2.3 + EC 3.5.4.10

lumped reaction EC 2.3.3.13 + EC 4.2.1.33 + EC 1.1.1.85 + EC 2.6.1.6 + EC 2.6.1.42

lumped reaction EC 2.6.1.83 + EC 5.1.1.7 + EC 4.1.1.20

cytoplasmatic MDH

mitochondrial MDH

cytoplasmatic MDH

lumped reactions EC 2.7.1.39 + EC 2.5.1.- + EC 4.4.1.8 + EC 2.1.1.13

in AraCyc it is noted as NADH-dependent

chloroplast MDH is activated in the light

lumped reaction EC 2.3.1.1 + EC 2.7.2.8 + EC 1.2.1.38 + EC 2.6.1.11 + EC 3.5.1.16

lumped reactions: paruvate dehydrogenase (acetyl-transferring)(1.2.4.1) + dihydrolipoyllysine-residue acetyltransferase (2.3.1.12) + dihydrolipoyl dehydrogenase (1.8.1.4)

The native enzyme is a hetero-octamer, in a composition of 4alpha4beta. Both alpha and beta subunits are required for enzyme activity.

lumped reaction EC 2.2.1.6 + EC 1.1.1.86 + EC 4.2.1.9

lumped reaction EC 2.7.2.11 + EC 1.2.1.41 + EC 1.5.1.2

lumped reaction EC 5.4.99.5 + EC 2.6.1.79 + EC 4.2.1.91

this reaction describes oxigenase activity of RuBisCO

gene set was accepted from (EC 6.2.1.4 ... GDP-forming), since there is no information of gene products used in EC 6.2.1.5

lumped reaction EC 1.1.1.95 + EC 2.6.1.52 + EC 3.1.3.3

lumped reaction EC 2.7.7.4 + EC 1.8.4.9 + EC 1.8.7.1

lumped reactions: (EC 1.2.4.2) + (EC 2.3.1.61) + (EC 1.8.1.4)

Althought, the topological analysis reveales this step as unused, but it is required to break the huge conserved moiety from all phosphorylated metabolites in plastid!

all SWEET suc-transporters were joint into one group that performs efflux of suc from autotrophic cells

all SUC suc-transporters were joint into one group that performs influx of suc into geterotrophic cells

old version: 4*h_plant + 1*ATP_plant + 1*H2O_plant => 4*h_external + 1*ADP_plant + 1*Orthophosphate_plant + 1*h_plant

integral protein mPTP, that transfers H+ from cytosol directly into matrix of mitochondrion

lumped reaction EC 4.1.3.27 + EC 2.4.2.18 + EC 5.3.1.24 + EC 4.1.1.48 + EC 4.2.1.20

lumped reaction EC 2.7.1.39 + EC 4.2.3.1

lumped reaction EC 5.4.99.5 + EC 2.6.1.79 + EC 1.3.1.78

lumped reaction EC 2.2.1.6 + EC 1.1.1.86 + EC 4.2.1.9 + EC 2.6.1.42

1*suc = 2*glc , this is stoichiometric abstraction, because sucrose hydrolysis results in glc + fru, whic is after phsphorylation is returned into glycolysis

transport and storage of inorganic sulfur in vacuole

transport and storage of inorganic phosphorus in vacuole

transport and storage of inorganic sulfur in vacuole

transport and storage of sucrose in vacuole 1) suc + H_vac => suc_vac + h [sucrose transport in antiport into vacuole] 2) ATP + H2O + h => H_vac + ADP + Pi + h [hydrolysis of ATP to pump in h into vacuole] final) suc + ATP + H2O => suc_vac + ADP + Pi + h