<?xml version="1.0" encoding="UTF-8"?> <!-- generated with COPASI 4.9.45 (Development) (http://www.copasi.org) at 2013-04-19 11:50:56 UTC --> <?oxygen RNGSchema="http://www.copasi.org/static/schema/CopasiML.rng" type="xml"?> <COPASI xmlns="http://www.copasi.org/static/schema" versionMajor="4" versionMinor="9" versionDevel="45" copasiSourcesModified="0"> <ListOfFunctions> <Function key="Function_40" name="Function for v1" type="UserDefined" reversible="true"> <Expression> (k1*A*E-k1a*EA)/Cell </Expression> <ListOfParameterDescriptions> <ParameterDescription key="FunctionParameter_254" name="A" order="0" role="substrate"/> <ParameterDescription key="FunctionParameter_270" name="Cell" order="1" role="volume"/> <ParameterDescription key="FunctionParameter_258" name="E" order="2" role="substrate"/> <ParameterDescription key="FunctionParameter_268" name="EA" order="3" role="product"/> <ParameterDescription key="FunctionParameter_264" name="k1" order="4" role="constant"/> 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<ParameterDescription key="FunctionParameter_395" name="EB" order="2" role="substrate"/> <ParameterDescription key="FunctionParameter_402" name="EBC" order="3" role="product"/> <ParameterDescription key="FunctionParameter_399" name="k25" order="4" role="constant"/> <ParameterDescription key="FunctionParameter_400" name="k25a" order="5" role="constant"/> </ListOfParameterDescriptions> </Function> <Function key="Function_64" name="Function for v26" type="UserDefined" reversible="true"> <Expression> (k26*EAB*C-k26a*EABC)/Cell </Expression> <ListOfParameterDescriptions> <ParameterDescription key="FunctionParameter_385" name="C" order="0" role="substrate"/> <ParameterDescription key="FunctionParameter_410" name="Cell" order="1" role="volume"/> <ParameterDescription key="FunctionParameter_401" name="EAB" order="2" role="substrate"/> <ParameterDescription key="FunctionParameter_408" name="EABC" order="3" role="product"/> <ParameterDescription key="FunctionParameter_405" name="k26" order="4" 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key="FunctionParameter_409" name="XC" order="2" role="substrate"/> <ParameterDescription key="FunctionParameter_403" name="k28" order="3" role="constant"/> <ParameterDescription key="FunctionParameter_413" name="k28a" order="4" role="constant"/> </ListOfParameterDescriptions> </Function> <Function key="Function_67" name="Function for v29" type="UserDefined" reversible="true"> <Expression> (k29*E_Q-k29a*E*Q)/Cell </Expression> <ListOfParameterDescriptions> <ParameterDescription key="FunctionParameter_424" name="Cell" order="0" role="volume"/> <ParameterDescription key="FunctionParameter_420" name="E" order="1" role="product"/> <ParameterDescription key="FunctionParameter_414" name="E_Q" order="2" role="substrate"/> <ParameterDescription key="FunctionParameter_422" name="Q" order="3" role="product"/> <ParameterDescription key="FunctionParameter_418" name="k29" order="4" role="constant"/> <ParameterDescription key="FunctionParameter_397" name="k29a" order="5" role="constant"/> </ListOfParameterDescriptions> </Function> <Function key="Function_68" name="Function for v30" type="UserDefined" reversible="true"> <Expression> (k30*XC*B-k30a*XC_B)/Cell </Expression> <ListOfParameterDescriptions> <ParameterDescription key="FunctionParameter_412" name="B" order="0" role="substrate"/> <ParameterDescription key="FunctionParameter_430" name="Cell" order="1" role="volume"/> <ParameterDescription key="FunctionParameter_421" name="XC" order="2" role="substrate"/> <ParameterDescription key="FunctionParameter_428" name="XC_B" order="3" role="product"/> <ParameterDescription key="FunctionParameter_425" name="k30" order="4" role="constant"/> <ParameterDescription key="FunctionParameter_426" name="k30a" order="5" role="constant"/> </ListOfParameterDescriptions> </Function> <Function key="Function_69" name="Function for v31" type="UserDefined" reversible="true"> <Expression> (k31*XC*R-k31a*XC_R)/Cell </Expression> <ListOfParameterDescriptions> <ParameterDescription 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<dcterms:W3CDTF>2013-03-21T18:08:46Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </Metabolite> <Metabolite key="Metabolite_3" name="E" simulationType="reactions" compartment="Compartment_0"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Metabolite_3"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:36:31Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </Metabolite> <Metabolite key="Metabolite_4" name="XC" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_5" name="EA" simulationType="reactions" compartment="Compartment_0"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Metabolite_5"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-26T10:58:53Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </Metabolite> <Metabolite key="Metabolite_6" name="EC" simulationType="reactions" compartment="Compartment_0"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Metabolite_6"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-26T10:58:38Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </Metabolite> <Metabolite key="Metabolite_7" name="EB" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_8" name="Q" simulationType="reactions" compartment="Compartment_0"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Metabolite_8"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T18:01:42Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </Metabolite> <Metabolite key="Metabolite_9" name="P" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_10" name="S" simulationType="fixed" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_11" name="R" simulationType="fixed" compartment="Compartment_0"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Metabolite_11"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T18:05:07Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </Metabolite> <Metabolite key="Metabolite_12" name="XQ" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_13" name="EQ" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_14" name="ER" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_15" name="E_Q" simulationType="reactions" compartment="Compartment_0"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Metabolite_15"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:31Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </Metabolite> <Metabolite key="Metabolite_16" name="EBC" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_17" name="XQ_R" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_18" name="EAB" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_19" name="XC_R" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_20" name="EABQ" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_21" name="EBQ" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_22" name="EAQ" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_23" name="XQ_B" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_24" name="XC_B" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_25" name="EAC" simulationType="reactions" compartment="Compartment_0"> </Metabolite> <Metabolite key="Metabolite_26" name="EABC" simulationType="reactions" compartment="Compartment_0"> </Metabolite> </ListOfMetabolites> <ListOfModelValues> <ModelValue key="ModelValue_0" name="k1" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_0"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:12:42Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k1a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k2a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k4],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k3],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k2],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k4a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k3a],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_1" name="k1a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_1"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:23:28Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_2" name="k2" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_2"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:50:10Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_3" name="k2a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_3"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:23:20Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_4" name="k3" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_4"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:22:47Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_5" name="k3a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_5"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:23:05Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_6" name="k4" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_6"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:22:54Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_7" name="k4a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_7"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:23:00Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_8" name="k5" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_9" name="k5a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_10" name="k6" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_10"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:42:52Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k6a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k10a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k5],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k2],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k10],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k5a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k2a],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_11" name="k6a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_12" name="k7" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_12"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:52:43Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k7a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k12a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k5],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k4],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k12],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k5a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k4a],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_13" name="k7a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_14" name="k8a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_15" name="k8" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_15"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:40:15Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k8a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k11a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k7],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k3],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k11],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k7a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k3a],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_16" name="k9" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_16"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:50:15Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_17" name="k9a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_18" name="k10" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_18"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:31:23Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_19" name="k10a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_19"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:49:41Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_20" name="k11" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_20"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:44:25Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k9],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k10],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k12a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k11a],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k9a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k10a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k12],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_21" name="k11a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_21"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:41Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_22" name="k12" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_23" name="k12a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_23"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:42Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_24" name="k13" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_25" name="k14" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_25"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:42Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_26" name="k14a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_26"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:28:07Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_27" name="k15" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_27"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:43Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_28" name="k15a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_28"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:43Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_29" name="k16" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_29"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:44Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_30" name="k16a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_30"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:44Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_31" name="k17" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_31"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:45Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_32" name="k17a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_32"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:38:45Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_33" name="k19" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_33"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:26:14Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k19a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k22a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k25],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k3],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k22],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k25a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k3a],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_34" name="k19a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_34"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:37:28Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_35" name="k20" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_35"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:29:45Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k20a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k19a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k24],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k1],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k19],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k24a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k1a],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_36" name="k20a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_36"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:37:30Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_37" name="k21" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_37"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:34:26Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_38" name="k21a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_38"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:37:50Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_39" name="k22" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_40" name="k22a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_41" name="k23" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_42" name="k23a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_43" name="k24" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_43"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:28:08Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k24a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k21a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k26],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k2],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k21],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k26a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k2a],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_44" name="k24a" simulationType="fixed"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_44"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:33:49Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> </ModelValue> <ModelValue key="ModelValue_45" name="k25" simulationType="assignment"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#ModelValue_45"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-22T12:31:45Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <Expression> <CN=Root,Model=TryS_119,Vector=Values[k25a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k23a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k26],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k4],Reference=InitialValue>/(<CN=Root,Model=TryS_119,Vector=Values[k23],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k26a],Reference=InitialValue>*<CN=Root,Model=TryS_119,Vector=Values[k4a],Reference=InitialValue>) </Expression> </ModelValue> <ModelValue key="ModelValue_46" name="k25a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_47" name="k26" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_48" name="k26a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_49" name="k27" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_50" name="k28" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_51" name="k28a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_52" name="k29" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_53" name="k29a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_54" name="k30" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_55" name="k30a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_56" name="k31" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_57" name="k31a" simulationType="fixed"> </ModelValue> <ModelValue key="ModelValue_58" name="k32" simulationType="fixed"> </ModelValue> </ListOfModelValues> <ListOfReactions> <Reaction key="Reaction_0" name="v1" reversible="true"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Reaction_0"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-21T17:13:48Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <ListOfSubstrates> <Substrate metabolite="Metabolite_0" stoichiometry="1"/> <Substrate metabolite="Metabolite_3" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_5" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1614" name="k1" value="13.4954"/> <Constant key="Parameter_1615" name="k1a" value="134.294"/> </ListOfConstants> <KineticLaw function="Function_40"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_254"> <SourceParameter reference="Metabolite_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_270"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_258"> <SourceParameter reference="Metabolite_3"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_268"> <SourceParameter reference="Metabolite_5"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_264"> <SourceParameter reference="ModelValue_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_266"> <SourceParameter reference="ModelValue_1"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_1" name="v2" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_2" stoichiometry="1"/> <Substrate metabolite="Metabolite_5" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_18" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1616" name="k2" value="1"/> <Constant key="Parameter_1617" name="k2a" value="1"/> </ListOfConstants> <KineticLaw function="Function_41"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_246"> <SourceParameter reference="Metabolite_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_276"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_267"> <SourceParameter reference="Metabolite_5"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_274"> <SourceParameter reference="Metabolite_18"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_271"> <SourceParameter reference="ModelValue_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_272"> <SourceParameter reference="ModelValue_3"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_2" name="v3" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_2" stoichiometry="1"/> <Substrate metabolite="Metabolite_3" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_7" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1618" name="k3" value="1"/> <Constant key="Parameter_1619" name="k3a" value="1"/> </ListOfConstants> <KineticLaw function="Function_42"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_265"> <SourceParameter reference="Metabolite_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_282"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_273"> <SourceParameter reference="Metabolite_3"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_280"> <SourceParameter reference="Metabolite_7"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_277"> <SourceParameter reference="ModelValue_4"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_278"> <SourceParameter reference="ModelValue_5"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_3" name="v4" reversible="true"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Reaction_3"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-24T19:13:48Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <ListOfSubstrates> <Substrate metabolite="Metabolite_0" stoichiometry="1"/> <Substrate metabolite="Metabolite_7" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_18" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1620" name="k4" value="762.267"/> <Constant key="Parameter_1621" name="k4a" value="39.715"/> </ListOfConstants> <KineticLaw function="Function_43"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_262"> <SourceParameter reference="Metabolite_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_288"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_286"> <SourceParameter reference="Metabolite_18"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_279"> <SourceParameter reference="Metabolite_7"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_283"> <SourceParameter reference="ModelValue_6"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_284"> <SourceParameter reference="ModelValue_7"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_4" name="v5" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_8" stoichiometry="1"/> <Substrate metabolite="Metabolite_18" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_20" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1622" name="k5" value="1"/> <Constant key="Parameter_1623" name="k5a" value="1"/> </ListOfConstants> <KineticLaw function="Function_44"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_294"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_285"> <SourceParameter reference="Metabolite_18"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_292"> <SourceParameter reference="Metabolite_20"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_269"> <SourceParameter reference="Metabolite_8"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_289"> <SourceParameter reference="ModelValue_8"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_290"> <SourceParameter reference="ModelValue_9"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_5" name="v6" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_8" stoichiometry="1"/> <Substrate metabolite="Metabolite_5" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_22" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1624" name="k6" value="1"/> <Constant key="Parameter_1625" name="k6a" value="1"/> </ListOfConstants> <KineticLaw function="Function_45"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_300"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_291"> <SourceParameter reference="Metabolite_5"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_298"> <SourceParameter reference="Metabolite_22"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_275"> <SourceParameter reference="Metabolite_8"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_295"> <SourceParameter reference="ModelValue_10"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_296"> <SourceParameter reference="ModelValue_11"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_6" name="v7" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_8" stoichiometry="1"/> <Substrate metabolite="Metabolite_7" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_21" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1626" name="k7" value="1"/> <Constant key="Parameter_1627" name="k7a" value="1"/> </ListOfConstants> <KineticLaw function="Function_46"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_306"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_297"> <SourceParameter reference="Metabolite_7"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_304"> <SourceParameter reference="Metabolite_21"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_281"> <SourceParameter reference="Metabolite_8"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_301"> <SourceParameter reference="ModelValue_12"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_302"> <SourceParameter reference="ModelValue_13"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_7" name="v8" reversible="true"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Reaction_7"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-04-09T09:57:31Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <ListOfSubstrates> <Substrate metabolite="Metabolite_3" stoichiometry="1"/> <Substrate metabolite="Metabolite_8" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_13" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1628" name="k8" value="125.297"/> <Constant key="Parameter_1629" name="k8a" value="237.469"/> </ListOfConstants> <KineticLaw function="Function_47"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_312"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_303"> <SourceParameter reference="Metabolite_3"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_310"> <SourceParameter reference="Metabolite_13"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_287"> <SourceParameter reference="Metabolite_8"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_307"> <SourceParameter reference="ModelValue_15"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_308"> <SourceParameter reference="ModelValue_14"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_8" name="v9" reversible="true"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Reaction_8"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-26T10:57:45Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <ListOfSubstrates> <Substrate metabolite="Metabolite_0" stoichiometry="1"/> <Substrate metabolite="Metabolite_13" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_22" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1630" name="k9" value="369.689"/> <Constant key="Parameter_1631" name="k9a" value="29.8764"/> </ListOfConstants> <KineticLaw function="Function_48"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_293"> <SourceParameter reference="Metabolite_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_318"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_316"> <SourceParameter reference="Metabolite_22"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_309"> <SourceParameter reference="Metabolite_13"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_313"> <SourceParameter reference="ModelValue_16"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_314"> <SourceParameter reference="ModelValue_17"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_9" name="v10" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_2" stoichiometry="1"/> <Substrate metabolite="Metabolite_22" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_20" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1632" name="k10" value="1"/> <Constant key="Parameter_1633" name="k10a" value="1"/> </ListOfConstants> <KineticLaw function="Function_49"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_299"> <SourceParameter reference="Metabolite_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_324"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_322"> <SourceParameter reference="Metabolite_20"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_315"> <SourceParameter reference="Metabolite_22"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_319"> <SourceParameter reference="ModelValue_18"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_320"> <SourceParameter reference="ModelValue_19"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_10" name="v11" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_2" stoichiometry="1"/> <Substrate metabolite="Metabolite_13" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_21" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1634" name="k11" value="1"/> <Constant key="Parameter_1635" name="k11a" value="1"/> </ListOfConstants> <KineticLaw function="Function_50"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_305"> <SourceParameter reference="Metabolite_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_330"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_328"> <SourceParameter reference="Metabolite_21"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_321"> <SourceParameter reference="Metabolite_13"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_325"> <SourceParameter reference="ModelValue_20"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_326"> <SourceParameter reference="ModelValue_21"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_11" name="v12" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_21" stoichiometry="1"/> <Substrate metabolite="Metabolite_0" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_20" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1636" name="k12" value="1"/> <Constant key="Parameter_1637" name="k12a" value="1"/> </ListOfConstants> <KineticLaw function="Function_51"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_311"> <SourceParameter reference="Metabolite_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_336"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_334"> <SourceParameter reference="Metabolite_20"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_327"> <SourceParameter reference="Metabolite_21"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_331"> <SourceParameter reference="ModelValue_22"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_332"> <SourceParameter reference="ModelValue_23"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_12" name="v13" reversible="false"> <ListOfSubstrates> <Substrate metabolite="Metabolite_20" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_9" stoichiometry="1"/> <Product metabolite="Metabolite_12" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1638" name="k13" value="1"/> </ListOfConstants> <KineticLaw function="Function_52"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_317"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_333"> <SourceParameter reference="Metabolite_20"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_337"> <SourceParameter reference="ModelValue_24"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_13" name="v14" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_12" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_14" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1639" name="k14" value="1"/> <Constant key="Parameter_1640" name="k14a" value="1"/> </ListOfConstants> <KineticLaw function="Function_53"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_343"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_341"> <SourceParameter reference="Metabolite_14"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_335"> <SourceParameter reference="Metabolite_12"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_329"> <SourceParameter reference="ModelValue_25"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_339"> <SourceParameter reference="ModelValue_26"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_14" name="v15" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_14" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_11" stoichiometry="1"/> <Product metabolite="Metabolite_3" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1643" name="k15" value="1"/> <Constant key="Parameter_1642" name="k15a" value="1"/> </ListOfConstants> <KineticLaw function="Function_54"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_350"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_346"> <SourceParameter reference="Metabolite_3"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_340"> <SourceParameter reference="Metabolite_14"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_348"> <SourceParameter reference="Metabolite_11"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_344"> <SourceParameter reference="ModelValue_27"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_323"> <SourceParameter reference="ModelValue_28"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_15" name="v16" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_2" stoichiometry="1"/> <Substrate metabolite="Metabolite_12" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_23" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1644" name="k16" value="1"/> <Constant key="Parameter_1641" name="k16a" value="1"/> </ListOfConstants> <KineticLaw function="Function_55"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_338"> <SourceParameter reference="Metabolite_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_356"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_347"> <SourceParameter reference="Metabolite_12"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_354"> <SourceParameter reference="Metabolite_23"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_351"> <SourceParameter reference="ModelValue_29"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_352"> <SourceParameter reference="ModelValue_30"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_16" name="v17" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_11" stoichiometry="1"/> <Substrate metabolite="Metabolite_12" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_17" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1645" name="k17" value="1"/> <Constant key="Parameter_1646" name="k17a" value="1"/> </ListOfConstants> <KineticLaw function="Function_56"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_362"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_345"> <SourceParameter reference="Metabolite_11"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_353"> <SourceParameter reference="Metabolite_12"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_360"> <SourceParameter reference="Metabolite_17"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_357"> <SourceParameter reference="ModelValue_31"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_358"> <SourceParameter reference="ModelValue_32"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_17" name="v19" reversible="true"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Reaction_17"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-26T10:56:16Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <ListOfSubstrates> <Substrate metabolite="Metabolite_1" stoichiometry="1"/> <Substrate metabolite="Metabolite_3" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_6" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1647" name="k19" value="1"/> <Constant key="Parameter_1648" name="k19a" value="1381.41"/> </ListOfConstants> <KineticLaw function="Function_57"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_342"> <SourceParameter reference="Metabolite_1"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_368"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_359"> <SourceParameter reference="Metabolite_3"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_366"> <SourceParameter reference="Metabolite_6"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_363"> <SourceParameter reference="ModelValue_33"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_364"> <SourceParameter reference="ModelValue_34"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_18" name="v20" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_0" stoichiometry="1"/> <Substrate metabolite="Metabolite_6" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_25" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1649" name="k20" value="1"/> <Constant key="Parameter_1650" name="k20a" value="1"/> </ListOfConstants> <KineticLaw function="Function_58"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_349"> <SourceParameter reference="Metabolite_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_374"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_372"> <SourceParameter reference="Metabolite_25"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_365"> <SourceParameter reference="Metabolite_6"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_369"> <SourceParameter reference="ModelValue_35"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_370"> <SourceParameter reference="ModelValue_36"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_19" name="v21" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_2" stoichiometry="1"/> <Substrate metabolite="Metabolite_25" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_26" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1651" name="k21" value="1"/> <Constant key="Parameter_1652" name="k21a" value="1"/> </ListOfConstants> <KineticLaw function="Function_59"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_355"> <SourceParameter reference="Metabolite_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_380"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_378"> <SourceParameter reference="Metabolite_26"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_371"> <SourceParameter reference="Metabolite_25"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_375"> <SourceParameter reference="ModelValue_37"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_376"> <SourceParameter reference="ModelValue_38"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_20" name="v22" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_2" stoichiometry="1"/> <Substrate metabolite="Metabolite_6" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_16" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1653" name="k22" value="1"/> <Constant key="Parameter_1654" name="k22a" value="1"/> </ListOfConstants> <KineticLaw function="Function_60"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_361"> <SourceParameter reference="Metabolite_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_386"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_384"> <SourceParameter reference="Metabolite_16"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_377"> <SourceParameter reference="Metabolite_6"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_381"> <SourceParameter reference="ModelValue_39"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_382"> <SourceParameter reference="ModelValue_40"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_21" name="v23" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_16" stoichiometry="1"/> <Substrate metabolite="Metabolite_0" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_26" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1655" name="k23" value="1"/> <Constant key="Parameter_1656" name="k23a" value="1"/> </ListOfConstants> <KineticLaw function="Function_61"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_367"> <SourceParameter reference="Metabolite_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_392"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_390"> <SourceParameter reference="Metabolite_26"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_383"> <SourceParameter reference="Metabolite_16"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_387"> <SourceParameter reference="ModelValue_41"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_388"> <SourceParameter reference="ModelValue_42"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_22" name="v24" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_1" stoichiometry="1"/> <Substrate metabolite="Metabolite_5" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_25" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1657" name="k24" value="1"/> <Constant key="Parameter_1658" name="k24a" value="1"/> </ListOfConstants> <KineticLaw function="Function_62"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_373"> <SourceParameter reference="Metabolite_1"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_398"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_389"> <SourceParameter reference="Metabolite_5"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_396"> <SourceParameter reference="Metabolite_25"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_393"> <SourceParameter reference="ModelValue_43"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_394"> <SourceParameter reference="ModelValue_44"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_23" name="v25" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_1" stoichiometry="1"/> <Substrate metabolite="Metabolite_7" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_16" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1659" name="k25" value="1"/> <Constant key="Parameter_1660" name="k25a" value="1"/> </ListOfConstants> <KineticLaw function="Function_63"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_379"> <SourceParameter reference="Metabolite_1"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_404"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_395"> <SourceParameter reference="Metabolite_7"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_402"> <SourceParameter reference="Metabolite_16"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_399"> <SourceParameter reference="ModelValue_45"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_400"> <SourceParameter reference="ModelValue_46"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_24" name="v26" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_1" stoichiometry="1"/> <Substrate metabolite="Metabolite_18" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_26" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1665" name="k26" value="1"/> <Constant key="Parameter_1664" name="k26a" value="1"/> </ListOfConstants> <KineticLaw function="Function_64"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_385"> <SourceParameter reference="Metabolite_1"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_410"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_401"> <SourceParameter reference="Metabolite_18"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_408"> <SourceParameter reference="Metabolite_26"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_405"> <SourceParameter reference="ModelValue_47"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_406"> <SourceParameter reference="ModelValue_48"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_25" name="v27" reversible="false"> <ListOfSubstrates> <Substrate metabolite="Metabolite_26" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_4" stoichiometry="1"/> <Product metabolite="Metabolite_9" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1663" name="k27" value="1"/> </ListOfConstants> <KineticLaw function="Function_65"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_391"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_407"> <SourceParameter reference="Metabolite_26"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_411"> <SourceParameter reference="ModelValue_49"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_26" name="v28" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_4" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_15" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1661" name="k28" value="1"/> <Constant key="Parameter_1662" name="k28a" value="1"/> </ListOfConstants> <KineticLaw function="Function_66"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_417"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_415"> <SourceParameter reference="Metabolite_15"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_409"> <SourceParameter reference="Metabolite_4"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_403"> <SourceParameter reference="ModelValue_50"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_413"> <SourceParameter reference="ModelValue_51"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_27" name="v29" reversible="true"> <ListOfSubstrates> <Substrate metabolite="Metabolite_15" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_8" stoichiometry="1"/> <Product metabolite="Metabolite_3" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1666" name="k29" value="1"/> <Constant key="Parameter_1667" name="k29a" value="1"/> </ListOfConstants> <KineticLaw function="Function_67"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_424"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_420"> <SourceParameter reference="Metabolite_3"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_414"> <SourceParameter reference="Metabolite_15"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_422"> <SourceParameter reference="Metabolite_8"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_418"> <SourceParameter reference="ModelValue_52"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_397"> <SourceParameter reference="ModelValue_53"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_28" name="v30" reversible="true"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Reaction_28"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-26T10:58:42Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <ListOfSubstrates> <Substrate metabolite="Metabolite_4" stoichiometry="1"/> <Substrate metabolite="Metabolite_2" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_24" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1670" name="k30" value="264.931"/> <Constant key="Parameter_1669" name="k30a" value="1706.16"/> </ListOfConstants> <KineticLaw function="Function_68"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_412"> <SourceParameter reference="Metabolite_2"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_430"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_421"> <SourceParameter reference="Metabolite_4"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_428"> <SourceParameter reference="Metabolite_24"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_425"> <SourceParameter reference="ModelValue_54"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_426"> <SourceParameter reference="ModelValue_55"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_29" name="v31" reversible="true"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Reaction_29"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-26T10:58:42Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <ListOfSubstrates> <Substrate metabolite="Metabolite_4" stoichiometry="1"/> <Substrate metabolite="Metabolite_11" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_19" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1668" name="k31" value="9.54226"/> <Constant key="Parameter_1671" name="k31a" value="216.98"/> </ListOfConstants> <KineticLaw function="Function_69"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_436"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_419"> <SourceParameter reference="Metabolite_11"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_427"> <SourceParameter reference="Metabolite_4"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_434"> <SourceParameter reference="Metabolite_19"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_431"> <SourceParameter reference="ModelValue_56"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_432"> <SourceParameter reference="ModelValue_57"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> <Reaction key="Reaction_30" name="v32" reversible="false"> <MiriamAnnotation> <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#Reaction_30"> <dcterms:created> <rdf:Description> <dcterms:W3CDTF>2013-03-26T10:58:43Z</dcterms:W3CDTF> </rdf:Description> </dcterms:created> </rdf:Description> </rdf:RDF> </MiriamAnnotation> <ListOfSubstrates> <Substrate metabolite="Metabolite_9" stoichiometry="1"/> </ListOfSubstrates> <ListOfProducts> <Product metabolite="Metabolite_10" stoichiometry="1"/> </ListOfProducts> <ListOfConstants> <Constant key="Parameter_1672" name="k32" value="4852.33"/> </ListOfConstants> <KineticLaw function="Function_70"> <ListOfCallParameters> <CallParameter functionParameter="FunctionParameter_416"> <SourceParameter reference="Compartment_0"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_433"> <SourceParameter reference="Metabolite_9"/> </CallParameter> <CallParameter functionParameter="FunctionParameter_437"> <SourceParameter reference="ModelValue_58"/> </CallParameter> </ListOfCallParameters> </KineticLaw> </Reaction> </ListOfReactions> <StateTemplate> <StateTemplateVariable objectReference="Model_0"/> <StateTemplateVariable objectReference="Metabolite_3"/> <StateTemplateVariable objectReference="Metabolite_8"/> <StateTemplateVariable objectReference="Metabolite_4"/> <StateTemplateVariable objectReference="Metabolite_12"/> <StateTemplateVariable objectReference="Metabolite_18"/> <StateTemplateVariable objectReference="Metabolite_26"/> <StateTemplateVariable objectReference="Metabolite_20"/> <StateTemplateVariable objectReference="Metabolite_7"/> <StateTemplateVariable objectReference="Metabolite_6"/> <StateTemplateVariable objectReference="Metabolite_13"/> <StateTemplateVariable objectReference="Metabolite_5"/> <StateTemplateVariable objectReference="Metabolite_9"/> <StateTemplateVariable objectReference="Metabolite_21"/> <StateTemplateVariable objectReference="Metabolite_25"/> <StateTemplateVariable objectReference="Metabolite_14"/> <StateTemplateVariable objectReference="Metabolite_15"/> <StateTemplateVariable objectReference="Metabolite_22"/> <StateTemplateVariable objectReference="Metabolite_24"/> <StateTemplateVariable objectReference="Metabolite_17"/> <StateTemplateVariable objectReference="Metabolite_16"/> <StateTemplateVariable objectReference="Metabolite_23"/> <StateTemplateVariable objectReference="Metabolite_19"/> <StateTemplateVariable objectReference="ModelValue_0"/> <StateTemplateVariable objectReference="ModelValue_10"/> <StateTemplateVariable objectReference="ModelValue_12"/> <StateTemplateVariable objectReference="ModelValue_15"/> <StateTemplateVariable objectReference="ModelValue_20"/> <StateTemplateVariable objectReference="ModelValue_33"/> <StateTemplateVariable objectReference="ModelValue_35"/> <StateTemplateVariable objectReference="ModelValue_43"/> <StateTemplateVariable objectReference="ModelValue_45"/> <StateTemplateVariable objectReference="Metabolite_0"/> <StateTemplateVariable objectReference="Metabolite_1"/> <StateTemplateVariable objectReference="Metabolite_2"/> <StateTemplateVariable objectReference="Metabolite_10"/> <StateTemplateVariable objectReference="Metabolite_11"/> <StateTemplateVariable objectReference="Compartment_0"/> <StateTemplateVariable objectReference="ModelValue_1"/> <StateTemplateVariable objectReference="ModelValue_2"/> <StateTemplateVariable objectReference="ModelValue_3"/> <StateTemplateVariable objectReference="ModelValue_4"/> <StateTemplateVariable objectReference="ModelValue_5"/> <StateTemplateVariable objectReference="ModelValue_6"/> <StateTemplateVariable objectReference="ModelValue_7"/> <StateTemplateVariable objectReference="ModelValue_8"/> <StateTemplateVariable objectReference="ModelValue_9"/> <StateTemplateVariable objectReference="ModelValue_11"/> <StateTemplateVariable objectReference="ModelValue_13"/> <StateTemplateVariable objectReference="ModelValue_14"/> <StateTemplateVariable objectReference="ModelValue_16"/> <StateTemplateVariable objectReference="ModelValue_17"/> <StateTemplateVariable objectReference="ModelValue_18"/> <StateTemplateVariable objectReference="ModelValue_19"/> <StateTemplateVariable objectReference="ModelValue_21"/> <StateTemplateVariable objectReference="ModelValue_22"/> <StateTemplateVariable objectReference="ModelValue_23"/> <StateTemplateVariable objectReference="ModelValue_24"/> <StateTemplateVariable objectReference="ModelValue_25"/> <StateTemplateVariable objectReference="ModelValue_26"/> <StateTemplateVariable objectReference="ModelValue_27"/> <StateTemplateVariable objectReference="ModelValue_28"/> <StateTemplateVariable objectReference="ModelValue_29"/> <StateTemplateVariable objectReference="ModelValue_30"/> <StateTemplateVariable objectReference="ModelValue_31"/> <StateTemplateVariable objectReference="ModelValue_32"/> <StateTemplateVariable objectReference="ModelValue_34"/> <StateTemplateVariable objectReference="ModelValue_36"/> <StateTemplateVariable objectReference="ModelValue_37"/> <StateTemplateVariable objectReference="ModelValue_38"/> <StateTemplateVariable objectReference="ModelValue_39"/> <StateTemplateVariable objectReference="ModelValue_40"/> <StateTemplateVariable objectReference="ModelValue_41"/> <StateTemplateVariable objectReference="ModelValue_42"/> <StateTemplateVariable objectReference="ModelValue_44"/> <StateTemplateVariable objectReference="ModelValue_46"/> <StateTemplateVariable objectReference="ModelValue_47"/> <StateTemplateVariable objectReference="ModelValue_48"/> <StateTemplateVariable objectReference="ModelValue_49"/> <StateTemplateVariable objectReference="ModelValue_50"/> <StateTemplateVariable objectReference="ModelValue_51"/> <StateTemplateVariable objectReference="ModelValue_52"/> <StateTemplateVariable objectReference="ModelValue_53"/> <StateTemplateVariable objectReference="ModelValue_54"/> <StateTemplateVariable objectReference="ModelValue_55"/> <StateTemplateVariable objectReference="ModelValue_56"/> <StateTemplateVariable objectReference="ModelValue_57"/> <StateTemplateVariable objectReference="ModelValue_58"/> </StateTemplate> <InitialState type="initialState"> 0 6.02214179e+017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.49537061687956 6.496983415110805e-009 7067.220021466759 125.2966506291472 6210.123456277067 0.01739668189544005 2.005267865347004e-006 54684.41904654458 8.61285612366646e-014 1.3850926117e+021 4.817713432e+021 1.806642537e+020 0 0 1 134.2939838 6317.116733 42.4469248983 223.401281347 286.7064474 762.2665647 39.71496125 22.91729291 1465.04965 1e-010 530.538761235 237.469413308 369.688932945 29.8763965658 261.19 7289.2804823 315.68381975 29.9958100432 1330.84779006 2.27895805686 543.476605024 1e-010 34.9267638563 4941.84508678 488.901949443 2199.40597503 48.5266386368 82.5043501462 868.3235560175809 1e-010 94.60314178235619 56632.71736790135 897.7372926606398 26.80024184881917 1e-010 1e-010 13678.37882701691 1e-010 0.04749572035088576 1058.424816339208 15.17703303207865 455.4656533189719 290.4225515875771 30247.77369507031 200.1432098627498 234.2365802541889 1218.736110552861 1e-010 420.551496677673 14253.47455029182 </InitialState> </Model> <ListOfTasks> <Task key="Task_12" name="Steady-State" type="steadyState" scheduled="false" updateModel="false"> <Report reference="Report_8" target="" append="1" confirmOverwrite="1"/> <Problem> <Parameter name="JacobianRequested" type="bool" value="1"/> <Parameter name="StabilityAnalysisRequested" type="bool" value="1"/> </Problem> <Method name="Enhanced Newton" type="EnhancedNewton"> <Parameter name="Resolution" type="unsignedFloat" value="1e-009"/> <Parameter name="Derivation Factor" type="unsignedFloat" value="0.001"/> <Parameter name="Use Newton" type="bool" value="1"/> <Parameter name="Use Integration" type="bool" value="1"/> <Parameter name="Use Back Integration" type="bool" value="1"/> <Parameter name="Accept Negative Concentrations" type="bool" value="0"/> <Parameter name="Iteration Limit" type="unsignedInteger" value="50"/> <Parameter name="Maximum duration for forward integration" type="unsignedFloat" value="1000000000"/> <Parameter name="Maximum duration for backward integration" type="unsignedFloat" value="1000000"/> </Method> </Task> <Task key="Task_11" name="Time-Course" type="timeCourse" scheduled="false" updateModel="false"> <Problem> <Parameter name="StepNumber" type="unsignedInteger" value="100"/> <Parameter name="StepSize" type="float" value="0.01"/> <Parameter name="Duration" type="float" value="1"/> <Parameter name="TimeSeriesRequested" type="bool" value="1"/> <Parameter name="OutputStartTime" type="float" value="0"/> <Parameter name="Output Event" type="bool" value="0"/> </Problem> <Method name="Deterministic (LSODA)" type="Deterministic(LSODA)"> <Parameter name="Integrate Reduced Model" type="bool" value="0"/> <Parameter name="Relative Tolerance" type="unsignedFloat" value="1e-006"/> <Parameter name="Absolute Tolerance" type="unsignedFloat" value="1e-012"/> <Parameter name="Max Internal Steps" type="unsignedInteger" value="10000"/> </Method> </Task> <Task key="Task_10" name="Scan" type="scan" scheduled="false" updateModel="false"> <Problem> <Parameter name="Subtask" type="unsignedInteger" value="0"/> <ParameterGroup name="ScanItems"> <ParameterGroup name="ScanItem"> <Parameter name="Maximum" type="float" value="3000"/> <Parameter name="Minimum" type="float" value="0"/> <Parameter name="Number of steps" type="unsignedInteger" value="100"/> <Parameter name="Object" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[B],Reference=InitialConcentration"/> <Parameter name="Type" type="unsignedInteger" value="1"/> <Parameter name="log" type="bool" value="0"/> </ParameterGroup> </ParameterGroup> <Parameter name="Output in subtask" type="bool" value="0"/> <Parameter name="Adjust initial conditions" type="bool" value="0"/> </Problem> <Method name="Scan Framework" type="ScanFramework"> </Method> </Task> <Task key="Task_9" name="Elementary Flux Modes" type="fluxMode" scheduled="false" updateModel="false"> <Report reference="Report_7" target="" append="1" confirmOverwrite="1"/> <Problem> </Problem> <Method name="EFM Algorithm" type="EFMAlgorithm"> </Method> </Task> <Task key="Task_8" name="Optimization" type="optimization" scheduled="false" updateModel="false"> <Report reference="Report_6" target="" append="1" confirmOverwrite="1"/> <Problem> <Parameter name="Subtask" type="cn" value="CN=Root,Vector=TaskList[Steady-State]"/> <ParameterText name="ObjectiveExpression" type="expression"> </ParameterText> <Parameter name="Maximize" type="bool" value="0"/> <Parameter name="Randomize Start Values" type="bool" value="0"/> <Parameter name="Calculate Statistics" type="bool" value="1"/> <ParameterGroup name="OptimizationItemList"> </ParameterGroup> <ParameterGroup name="OptimizationConstraintList"> </ParameterGroup> </Problem> <Method name="Random Search" type="RandomSearch"> <Parameter name="Number of Iterations" type="unsignedInteger" value="100000"/> <Parameter name="Random Number Generator" type="unsignedInteger" value="1"/> <Parameter name="Seed" type="unsignedInteger" value="0"/> </Method> </Task> <Task key="Task_7" name="Parameter Estimation" type="parameterFitting" scheduled="false" updateModel="false"> <Report reference="Report_5" target="" append="1" confirmOverwrite="1"/> <Problem> <Parameter name="Maximize" type="bool" value="0"/> <Parameter name="Randomize Start Values" type="bool" value="0"/> <Parameter name="Calculate Statistics" type="bool" value="1"/> <ParameterGroup name="OptimizationItemList"> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k19a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="868.3235560175809"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k20a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="1e-010"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k21],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="94.60314178235619"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k21a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="56632.71736790135"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k22],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="897.7372926606398"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k22a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="26.80024184881917"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k23],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="1e-010"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k23a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="1e-010"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k24a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="13678.37882701691"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k25a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="1e-010"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k26],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="0.04749572035088576"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k26a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="1058.424816339208"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k27],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="15.17703303207865"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k28],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="455.4656533189719"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k28a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="290.4225515875771"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k29],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="30247.77369507031"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k29a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="200.1432098627498"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k30],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="234.2365802541889"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k30a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="1218.736110552861"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k31],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="1e-010"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k31a],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="420.551496677673"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> <ParameterGroup name="FitItem"> <ParameterGroup name="Affected Cross Validation Experiments"> </ParameterGroup> <ParameterGroup name="Affected Experiments"> </ParameterGroup> <Parameter name="LowerBound" type="cn" value="1e-10"/> <Parameter name="ObjectCN" type="cn" value="CN=Root,Model=TryS_119,Vector=Values[k32],Reference=InitialValue"/> <Parameter name="StartValue" type="float" value="14253.47455029182"/> <Parameter name="UpperBound" type="cn" value="inf"/> </ParameterGroup> </ParameterGroup> <ParameterGroup name="OptimizationConstraintList"> </ParameterGroup> <Parameter name="Steady-State" type="cn" value="CN=Root,Vector=TaskList[Steady-State]"/> <Parameter name="Time-Course" type="cn" value="CN=Root,Vector=TaskList[Time-Course]"/> <ParameterGroup name="Experiment Set"> <ParameterGroup name="Experiment"> <Parameter name="Data is Row Oriented" type="bool" value="1"/> <Parameter name="Experiment Type" type="unsignedInteger" value="0"/> <Parameter name="File Name" type="file" value="../data/Sysmo_trypanothionesystem/data_Alejandro/cleaned_up_data/umol/20120801 Spd Data with high Mg cleaned_120823_umol.csv"/> <Parameter name="First Row" type="unsignedInteger" value="1"/> <Parameter name="Key" type="key" value="Experiment_0"/> <Parameter name="Last Row" type="unsignedInteger" value="76"/> <Parameter name="Number of Columns" type="unsignedInteger" value="26"/> <ParameterGroup name="Object Map"> <ParameterGroup name="0"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="1"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="10"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[R],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="11"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[Q],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="12"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[C],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="13"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[A],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="14"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[B],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="15"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="16"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="17"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="18"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="19"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="2"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="20"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="21"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="22"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="23"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="24"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Reactions[v32],Reference=Flux"/> <Parameter name="Role" type="unsignedInteger" value="2"/> </ParameterGroup> <ParameterGroup name="25"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="3"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="4"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="5"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="6"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="7"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="8"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="9"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> </ParameterGroup> <Parameter name="Row containing Names" type="unsignedInteger" value="1"/> <Parameter name="Separator" type="string" value=";"/> <Parameter name="Weight Method" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="Experiment_1"> <Parameter name="Data is Row Oriented" type="bool" value="1"/> <Parameter name="Experiment Type" type="unsignedInteger" value="0"/> <Parameter name="File Name" type="file" value="../data/Sysmo_trypanothionesystem/data_Alejandro/cleaned_up_data/umol/20120910_TSH2 Inhibition_extradatapoints_Spdonly_umol.csv"/> <Parameter name="First Row" type="unsignedInteger" value="1"/> <Parameter name="Key" type="key" value="Experiment_1"/> <Parameter name="Last Row" type="unsignedInteger" value="73"/> <Parameter name="Number of Columns" type="unsignedInteger" value="26"/> <ParameterGroup name="Object Map"> <ParameterGroup name="0"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="1"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="10"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[R],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="11"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[Q],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="12"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[C],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="13"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[A],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="14"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Compartments[Cell],Vector=Metabolites[B],Reference=InitialConcentration"/> <Parameter name="Role" type="unsignedInteger" value="1"/> </ParameterGroup> <ParameterGroup name="15"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="16"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="17"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="18"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="19"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="2"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="20"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="21"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="22"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="23"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="24"> <Parameter name="Object CN" type="cn" value="CN=Root,Model=TryS_119,Vector=Reactions[v32],Reference=Flux"/> <Parameter name="Role" type="unsignedInteger" value="2"/> </ParameterGroup> <ParameterGroup name="25"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="3"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="4"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="5"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="6"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="7"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="8"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> <ParameterGroup name="9"> <Parameter name="Role" type="unsignedInteger" value="0"/> </ParameterGroup> </ParameterGroup> <Parameter name="Row containing Names" type="unsignedInteger" value="1"/> <Parameter name="Separator" type="string" value=";"/> <Parameter name="Weight Method" type="unsignedInteger" value="1"/> </ParameterGroup> </ParameterGroup> <ParameterGroup name="Validation Set"> <Parameter name="Threshold" type="unsignedInteger" value="5"/> <Parameter name="Weight" type="unsignedFloat" value="1"/> </ParameterGroup> </Problem> <Method name="Evolutionary Programming" type="EvolutionaryProgram"> <Parameter name="Number of Generations" type="unsignedInteger" value="200"/> <Parameter name="Population Size" type="unsignedInteger" value="20"/> <Parameter name="Random Number Generator" type="unsignedInteger" value="1"/> <Parameter name="Seed" type="unsignedInteger" value="0"/> </Method> </Task> <Task key="Task_6" name="Metabolic Control Analysis" type="metabolicControlAnalysis" scheduled="false" updateModel="false"> <Report reference="Report_4" target="" append="1" confirmOverwrite="1"/> <Problem> <Parameter name="Steady-State" type="key" value="Task_12"/> </Problem> <Method name="MCA Method (Reder)" type="MCAMethod(Reder)"> <Parameter name="Modulation Factor" type="unsignedFloat" value="1e-009"/> </Method> </Task> <Task key="Task_5" name="Lyapunov Exponents" type="lyapunovExponents" scheduled="false" updateModel="false"> <Report reference="Report_3" target="" append="1" confirmOverwrite="1"/> <Problem> <Parameter name="ExponentNumber" type="unsignedInteger" value="3"/> <Parameter name="DivergenceRequested" type="bool" value="1"/> <Parameter name="TransientTime" type="float" value="0"/> </Problem> <Method name="Wolf Method" type="WolfMethod"> <Parameter name="Orthonormalization Interval" type="unsignedFloat" value="1"/> <Parameter name="Overall time" type="unsignedFloat" value="1000"/> <Parameter name="Relative Tolerance" type="unsignedFloat" value="1e-006"/> <Parameter name="Absolute Tolerance" type="unsignedFloat" value="1e-012"/> <Parameter name="Max Internal Steps" type="unsignedInteger" value="10000"/> </Method> </Task> <Task key="Task_4" name="Time Scale Separation Analysis" type="timeScaleSeparationAnalysis" scheduled="false" updateModel="false"> <Report reference="Report_2" target="" append="1" confirmOverwrite="1"/> <Problem> <Parameter name="StepNumber" type="unsignedInteger" value="100"/> <Parameter name="StepSize" type="float" value="0.01"/> <Parameter name="Duration" type="float" value="1"/> <Parameter name="TimeSeriesRequested" type="bool" value="1"/> <Parameter name="OutputStartTime" type="float" value="0"/> </Problem> <Method name="ILDM (LSODA,Deuflhard)" type="TimeScaleSeparation(ILDM,Deuflhard)"> <Parameter name="Deuflhard Tolerance" type="unsignedFloat" value="1e-006"/> </Method> </Task> <Task key="Task_3" name="Sensitivities" type="sensitivities" scheduled="false" updateModel="false"> <Report reference="Report_1" target="" append="1" confirmOverwrite="1"/> <Problem> <Parameter name="SubtaskType" type="unsignedInteger" value="1"/> <ParameterGroup name="TargetFunctions"> <Parameter name="SingleObject" type="cn" value=""/> <Parameter name="ObjectListType" type="unsignedInteger" value="7"/> </ParameterGroup> <ParameterGroup name="ListOfVariables"> <ParameterGroup name="Variables"> <Parameter name="SingleObject" type="cn" value=""/> <Parameter name="ObjectListType" type="unsignedInteger" value="41"/> </ParameterGroup> </ParameterGroup> </Problem> <Method name="Sensitivities Method" type="SensitivitiesMethod"> <Parameter name="Delta factor" type="unsignedFloat" value="0.001"/> <Parameter name="Delta minimum" type="unsignedFloat" value="1e-012"/> </Method> </Task> <Task key="Task_2" name="Moieties" type="moieties" scheduled="false" updateModel="false"> <Problem> </Problem> <Method name="Householder Reduction" type="Householder"> </Method> </Task> <Task key="Task_1" name="Cross Section" type="crosssection" scheduled="false" updateModel="false"> <Problem> <Parameter name="StepNumber" type="unsignedInteger" value="100"/> <Parameter name="StepSize" type="float" value="0.01"/> <Parameter name="Duration" type="float" value="1"/> <Parameter name="TimeSeriesRequested" type="bool" value="1"/> <Parameter name="OutputStartTime" type="float" value="0"/> <Parameter name="Output Event" type="bool" value="0"/> <Parameter name="LimitCrossings" type="bool" value="0"/> <Parameter name="NumCrossingsLimit" type="unsignedInteger" value="0"/> <Parameter name="LimitOutTime" type="bool" value="0"/> <Parameter name="LimitOutCrossings" type="bool" value="0"/> <Parameter name="PositiveDirection" type="bool" value="1"/> <Parameter name="NumOutCrossingsLimit" type="unsignedInteger" value="0"/> <Parameter name="LimitUntilConvergence" type="bool" value="0"/> <Parameter name="ConvergenceTolerance" type="float" value="1e-006"/> <Parameter name="Threshold" type="float" value="0"/> <Parameter name="DelayOutputUntilConvergence" type="bool" value="0"/> <Parameter name="OutputConvergenceTolerance" type="float" value="1e-006"/> <ParameterText name="TriggerExpression" type="expression"> </ParameterText> <Parameter name="SingleVariable" type="cn" value=""/> </Problem> <Method name="Deterministic (LSODA)" type="Deterministic(LSODA)"> <Parameter name="Integrate Reduced Model" type="bool" value="0"/> <Parameter name="Relative Tolerance" type="unsignedFloat" value="1e-006"/> <Parameter name="Absolute Tolerance" type="unsignedFloat" value="1e-012"/> <Parameter name="Max Internal Steps" type="unsignedInteger" value="10000"/> </Method> </Task> <Task key="Task_13" name="Linear Noise Approximation" type="linearNoiseApproximation" scheduled="false" updateModel="false"> <Report reference="Report_0" target="" append="1" confirmOverwrite="1"/> <Problem> <Parameter name="Steady-State" type="key" value="Task_12"/> </Problem> <Method name="Linear Noise Approximation" type="LinearNoiseApproximation"> </Method> </Task> </ListOfTasks> <ListOfReports> <Report key="Report_8" name="Steady-State" taskType="steadyState" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Footer> <Object cn="CN=Root,Vector=TaskList[Steady-State]"/> </Footer> </Report> <Report key="Report_7" name="Elementary Flux Modes" taskType="fluxMode" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Footer> <Object cn="CN=Root,Vector=TaskList[Elementary Flux Modes],Object=Result"/> </Footer> </Report> <Report key="Report_6" name="Optimization" taskType="optimization" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Header> <Object cn="CN=Root,Vector=TaskList[Optimization],Object=Description"/> <Object cn="String=\[Function Evaluations\]"/> <Object cn="Separator=	"/> <Object cn="String=\[Best Value\]"/> <Object cn="Separator=	"/> <Object cn="String=\[Best Parameters\]"/> </Header> <Body> <Object cn="CN=Root,Vector=TaskList[Optimization],Problem=Optimization,Reference=Function Evaluations"/> <Object cn="Separator=	"/> <Object cn="CN=Root,Vector=TaskList[Optimization],Problem=Optimization,Reference=Best Value"/> <Object cn="Separator=	"/> <Object cn="CN=Root,Vector=TaskList[Optimization],Problem=Optimization,Reference=Best Parameters"/> </Body> <Footer> <Object cn="String=
"/> <Object cn="CN=Root,Vector=TaskList[Optimization],Object=Result"/> </Footer> </Report> <Report key="Report_5" name="Parameter Estimation" taskType="parameterFitting" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Header> <Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Object=Description"/> <Object cn="String=\[Function Evaluations\]"/> <Object cn="Separator=	"/> <Object cn="String=\[Best Value\]"/> <Object cn="Separator=	"/> <Object cn="String=\[Best Parameters\]"/> </Header> <Body> <Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Problem=Parameter Estimation,Reference=Function Evaluations"/> <Object cn="Separator=	"/> <Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Problem=Parameter Estimation,Reference=Best Value"/> <Object cn="Separator=	"/> <Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Problem=Parameter Estimation,Reference=Best Parameters"/> </Body> <Footer> <Object cn="String=
"/> <Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Object=Result"/> </Footer> </Report> <Report key="Report_4" name="Metabolic Control Analysis" taskType="metabolicControlAnalysis" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Header> <Object cn="CN=Root,Vector=TaskList[Metabolic Control Analysis],Object=Description"/> </Header> <Footer> <Object cn="String=
"/> <Object cn="CN=Root,Vector=TaskList[Metabolic Control Analysis],Object=Result"/> </Footer> </Report> <Report key="Report_3" name="Lyapunov Exponents" taskType="lyapunovExponents" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Header> <Object cn="CN=Root,Vector=TaskList[Lyapunov Exponents],Object=Description"/> </Header> <Footer> <Object cn="String=
"/> <Object cn="CN=Root,Vector=TaskList[Lyapunov Exponents],Object=Result"/> </Footer> </Report> <Report key="Report_2" name="Time Scale Separation Analysis" taskType="timeScaleSeparationAnalysis" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Header> <Object cn="CN=Root,Vector=TaskList[Time Scale Separation Analysis],Object=Description"/> </Header> <Footer> <Object cn="String=
"/> <Object cn="CN=Root,Vector=TaskList[Time Scale Separation Analysis],Object=Result"/> </Footer> </Report> <Report key="Report_1" name="Sensitivities" taskType="sensitivities" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Header> <Object cn="CN=Root,Vector=TaskList[Sensitivities],Object=Description"/> </Header> <Footer> <Object cn="String=
"/> <Object cn="CN=Root,Vector=TaskList[Sensitivities],Object=Result"/> </Footer> </Report> <Report key="Report_0" name="Linear Noise Approximation" taskType="linearNoiseApproximation" separator="	" precision="6"> <Comment> Automatically generated report. </Comment> <Header> <Object cn="CN=Root,Vector=TaskList[Linear Noise Approximation],Object=Description"/> </Header> <Footer> <Object cn="String=
"/> <Object cn="CN=Root,Vector=TaskList[Linear Noise Approximation],Object=Result"/> </Footer> </Report> </ListOfReports> <ListOfPlots> <PlotSpecification name="Progress of Fit" type="Plot2D" active="1"> <Parameter name="log X" type="bool" value="0"/> <Parameter name="log Y" type="bool" value="1"/> <ListOfPlotItems> <PlotItem name="sum of squares" type="Curve2D"> <Parameter name="Color" type="string" value="auto"/> <Parameter name="Line subtype" type="unsignedInteger" value="0"/> <Parameter name="Line type" type="unsignedInteger" value="0"/> <Parameter name="Line width" type="unsignedFloat" value="1"/> <Parameter name="Recording Activity" type="string" value="during"/> <Parameter name="Symbol subtype" type="unsignedInteger" value="0"/> <ListOfChannels> <ChannelSpec cn="CN=Root,Vector=TaskList[Parameter Estimation],Problem=Parameter Estimation,Reference=Function Evaluations"/> <ChannelSpec cn="CN=Root,Vector=TaskList[Parameter Estimation],Problem=Parameter Estimation,Reference=Best Value"/> </ListOfChannels> </PlotItem> </ListOfPlotItems> </PlotSpecification> </ListOfPlots> <GUI> </GUI> <SBMLReference file="TryS_104.xml"> <SBMLMap SBMLid="A" COPASIkey="Metabolite_0"/> <SBMLMap SBMLid="B" COPASIkey="Metabolite_2"/> <SBMLMap SBMLid="C" COPASIkey="Metabolite_1"/> <SBMLMap SBMLid="Cell" COPASIkey="Compartment_0"/> <SBMLMap SBMLid="E" COPASIkey="Metabolite_3"/> <SBMLMap SBMLid="EA" COPASIkey="Metabolite_5"/> <SBMLMap SBMLid="EAB" COPASIkey="Metabolite_18"/> <SBMLMap SBMLid="EABC" COPASIkey="Metabolite_26"/> <SBMLMap SBMLid="EABQ" COPASIkey="Metabolite_20"/> <SBMLMap SBMLid="EAC" COPASIkey="Metabolite_25"/> <SBMLMap SBMLid="EAQ" COPASIkey="Metabolite_22"/> <SBMLMap SBMLid="EB" COPASIkey="Metabolite_7"/> <SBMLMap SBMLid="EBC" COPASIkey="Metabolite_16"/> <SBMLMap SBMLid="EBQ" COPASIkey="Metabolite_21"/> <SBMLMap SBMLid="EC" COPASIkey="Metabolite_6"/> <SBMLMap SBMLid="EQ" COPASIkey="Metabolite_13"/> <SBMLMap SBMLid="ER" COPASIkey="Metabolite_14"/> <SBMLMap SBMLid="E_Q" 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