Command line: /home/administrator/Software/SPAdes-3.13.1-Linux/bin/spades.py --only-error-correction -m 230 -t 32 -o /DATA/markop/Pcitri_rnaspades_alldata/input --pe1-fr --pe2-fr --pe3-fr --pe1-12 /DATA/markop/Pcitri_rnaspades_alldata/input/SUSPHIRE_filtered.fastq --pe2-12 /DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh50_filtered.fastq --pe3-12 /DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh75_filtered.fastq System information: SPAdes version: 3.13.1 Python version: 2.7.12 OS: Linux-4.13.0-41-generic-x86_64-with-LinuxMint-18.2-sonya Output dir: /DATA/markop/Pcitri_rnaspades_alldata/input Mode: ONLY read error correction (without assembling) Debug mode is turned OFF Dataset parameters: Multi-cell mode (you should set '--sc' flag if input data was obtained with MDA (single-cell) technology or --meta flag if processing metagenomic dataset) Reads: Library number: 1, library type: paired-end orientation: fr left reads: not specified right reads: not specified interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/SUSPHIRE_filtered.fastq'] single reads: not specified merged reads: not specified Library number: 2, library type: paired-end orientation: fr left reads: not specified right reads: not specified interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh50_filtered.fastq'] single reads: not specified merged reads: not specified Library number: 3, library type: paired-end orientation: fr left reads: not specified right reads: not specified interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh75_filtered.fastq'] single reads: not specified merged reads: not specified Read error correction parameters: Iterations: 1 PHRED offset will be auto-detected Corrected reads will be compressed Other parameters: Dir for temp files: /DATA/markop/Pcitri_rnaspades_alldata/input/tmp Threads: 32 Memory limit (in Gb): 230 ======= SPAdes pipeline started. Log can be found here: /DATA/markop/Pcitri_rnaspades_alldata/input/spades.log == Splitting /DATA/markop/Pcitri_rnaspades_alldata/input/SUSPHIRE_filtered.fastq into left and right reads (in /DATA/markop/Pcitri_rnaspades_alldata/input/split_input directory) == Splitting /DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh50_filtered.fastq into left and right reads (in /DATA/markop/Pcitri_rnaspades_alldata/input/split_input directory) == Splitting /DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh75_filtered.fastq into left and right reads (in /DATA/markop/Pcitri_rnaspades_alldata/input/split_input directory) ===== Read error correction started. == Running read error correction tool: /home/administrator/Software/SPAdes-3.13.1-Linux/bin/spades-hammer /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/configs/config.info 0:00:00.000 4M / 4M INFO General (main.cpp : 75) Starting BayesHammer, built from refs/heads/spades_3.13.1, git revision 9a9d54db2ff9abaac718155bf74c12ec9464e8ca 0:00:00.000 4M / 4M INFO General (main.cpp : 76) Loading config from /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/configs/config.info 0:00:00.002 4M / 4M INFO General (main.cpp : 78) Maximum # of threads to use (adjusted due to OMP capabilities): 32 0:00:00.002 4M / 4M INFO General (memory_limit.cpp : 49) Memory limit set to 230 Gb 0:00:00.002 4M / 4M INFO General (main.cpp : 86) Trying to determine PHRED offset 0:00:00.011 4M / 4M INFO General (main.cpp : 92) Determined value is 33 0:00:00.011 4M / 4M INFO General (hammer_tools.cpp : 36) Hamming graph threshold tau=1, k=21, subkmer positions = [ 0 10 ] 0:00:00.011 4M / 4M INFO General (main.cpp : 113) Size of aux. kmer data 24 bytes === ITERATION 0 begins === 0:00:00.012 4M / 4M INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index 0:00:00.012 4M / 4M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 512 files using 32 threads. This might take a while. 0:00:00.013 4M / 4M INFO General (file_limit.hpp : 32) Open file limit set to 10000 0:00:00.013 4M / 4M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.39579 Gb 0:00:00.013 4M / 4M INFO General (kmer_splitters.hpp : 97) Using cell size of 131072 0:00:00.122 17G / 17G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_1.fastq 0:00:59.637 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 7551826 reads 0:01:57.064 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 15099419 reads 0:02:58.294 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 22632325 reads 0:03:58.434 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 30111488 reads 0:05:00.866 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 37626949 reads 0:06:04.349 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 45207512 reads 0:07:03.266 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 52764527 reads 0:08:04.166 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 60447827 reads 0:09:05.019 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 68064494 reads 0:10:06.500 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 75612315 reads 0:11:08.465 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 83161170 reads 0:12:09.625 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 90758682 reads 0:18:10.582 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 136365190 reads 0:36:45.438 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 275373560 reads 0:44:21.558 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_2.fastq 1:11:44.448 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 537165579 reads 1:28:54.258 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_1.fastq 1:40:06.249 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_2.fastq 1:52:30.932 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_1.fastq 2:01:45.259 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 1078169479 reads 2:10:02.224 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_2.fastq 2:27:23.453 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 112) Total 1375900260 reads processed 2:27:25.041 128M / 18G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. 2:53:47.489 128M / 18G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 2665835484 kmers in total. 2:53:47.489 128M / 18G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. 2:54:06.518 128M / 18G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices 2:55:53.937 1G / 18G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. 2:58:15.092 1G / 18G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 1236163304 bytes occupied (3.70965 bits per kmer). 2:58:15.096 1G / 18G INFO K-mer Counting (kmer_data.cpp : 356) Arranging kmers in hash map order 3:00:14.669 41G / 41G INFO General (main.cpp : 148) Clustering Hamming graph. 4:01:51.554 41G / 41G INFO General (main.cpp : 155) Extracting clusters 4:46:10.114 41G / 97G INFO General (main.cpp : 167) Clustering done. Total clusters: 963678659 4:46:11.913 21G / 97G INFO K-mer Counting (kmer_data.cpp : 376) Collecting K-mer information, this takes a while. 4:46:45.852 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_1.fastq 5:46:29.452 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_2.fastq 6:43:49.562 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_1.fastq 6:51:27.922 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_2.fastq 6:58:38.802 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_1.fastq 7:15:33.108 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_2.fastq 7:32:09.314 80G / 97G INFO K-mer Counting (kmer_data.cpp : 389) Collection done, postprocessing. 7:32:21.272 80G / 97G INFO K-mer Counting (kmer_data.cpp : 403) There are 2665835484 kmers in total. Among them 1629294690 (61.1176%) are singletons. 7:32:21.272 80G / 97G INFO General (main.cpp : 173) Subclustering Hamming graph 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 649) Subclustering done. Total 105389 non-read kmers were generated. 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 650) Subclustering statistics: 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 651) Total singleton hamming clusters: 816331828. Among them 387596852 (47.4803%) are good 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 652) Total singleton subclusters: 11642560. Among them 11608386 (99.7065%) are good 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 653) Total non-singleton subcluster centers: 187925135. Among them 142141957 (75.6375%) are good 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 654) Average size of non-trivial subcluster: 9.84488 kmers 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 655) Average number of sub-clusters per non-singleton cluster: 1.35441 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 656) Total solid k-mers: 541347195 9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 657) Substitution probabilities: [4,4]((0.910902,0.0286632,0.028672,0.031763),(0.0368107,0.908562,0.0195257,0.0351015),(0.0326911,0.0189579,0.909382,0.0389691),(0.0304214,0.0285475,0.0285302,0.912501)) 9:41:01.902 80G / 97G INFO General (main.cpp : 178) Finished clustering. 9:41:01.908 80G / 97G INFO General (main.cpp : 197) Starting solid k-mers expansion in 32 threads. 11:17:59.406 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 0 produced 262811718 new k-mers. 12:54:22.502 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 1 produced 22818263 new k-mers. 14:31:21.390 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 2 produced 1694115 new k-mers. 16:07:14.730 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 3 produced 227983 new k-mers. 17:42:51.650 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 4 produced 46172 new k-mers. 19:19:05.346 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 5 produced 14599 new k-mers. 20:55:46.246 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 6 produced 4875 new k-mers. 22:31:40.518 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 7 produced 1774 new k-mers. 24:07:36.254 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 8 produced 604 new k-mers. 25:43:22.014 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 9 produced 304 new k-mers. 27:19:10.398 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 10 produced 69 new k-mers. 28:54:48.186 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 11 produced 0 new k-mers. 28:54:48.187 80G / 97G INFO General (main.cpp : 222) Solid k-mers finalized 28:54:48.192 80G / 97G INFO General (hammer_tools.cpp : 220) Starting read correction in 32 threads. 28:54:48.192 80G / 97G INFO General (hammer_tools.cpp : 233) Correcting pair of reads: /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_1.fastq and /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_2.fastq 28:55:10.793 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 0 of 3200000 reads. 28:55:36.575 84G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 0 28:55:42.569 84G / 97G INFO General (hammer_tools.cpp : 185) Written batch 0 28:56:18.435 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 1 of 3200000 reads. 28:56:44.274 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 1 28:56:50.497 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 1 28:57:28.314 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 2 of 3200000 reads. 28:57:54.855 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 2 28:58:01.125 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 2 28:58:38.756 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 3 of 3200000 reads. 28:59:05.046 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 3 28:59:11.188 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 3 28:59:48.221 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 4 of 3200000 reads. 29:00:13.602 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 4 29:00:19.733 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 4 29:00:57.508 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 5 of 3200000 reads. 29:01:22.922 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 5 29:01:29.234 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 5 29:02:05.940 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 6 of 3200000 reads. 29:02:31.851 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 6 29:02:38.208 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 6 29:03:16.627 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 7 of 3200000 reads. 29:03:42.662 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 7 29:03:49.189 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 7 29:04:27.173 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 8 of 3200000 reads. 29:04:53.458 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 8 29:05:00.697 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 8 29:05:39.014 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 9 of 3200000 reads. 29:06:05.972 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 9 29:06:13.590 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 9 29:06:51.540 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 10 of 3200000 reads. 29:07:16.424 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 10 29:07:22.618 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 10 29:08:00.868 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 11 of 3200000 reads. 29:08:25.835 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 11 29:08:31.793 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 11 29:09:10.536 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 12 of 3200000 reads. 29:09:37.151 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 12 29:09:43.147 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 12 29:10:20.554 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 13 of 3200000 reads. 29:10:45.796 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 13 29:10:51.814 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 13 29:11:30.390 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 14 of 3200000 reads. 29:11:55.591 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 14 29:12:01.791 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 14 29:12:40.207 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 15 of 3200000 reads. 29:13:05.683 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 15 29:13:11.835 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 15 29:13:50.770 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 16 of 3200000 reads. 29:14:16.032 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 16 29:14:22.720 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 16 29:15:00.455 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 17 of 3200000 reads. 29:15:25.174 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 17 29:15:32.452 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 17 29:16:10.469 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 18 of 3200000 reads. 29:16:35.203 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 18 29:16:41.280 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 18 29:17:17.932 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 19 of 3200000 reads. 29:17:42.327 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 19 29:17:48.294 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 19 29:18:27.265 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 20 of 3200000 reads. 29:18:53.770 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 20 29:18:59.725 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 20 29:19:37.563 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 21 of 3200000 reads. 29:20:03.130 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 21 29:20:09.178 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 21 29:20:47.678 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 22 of 3200000 reads. 29:21:14.034 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 22 29:21:20.211 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 22 29:21:57.870 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 23 of 3200000 reads. 29:22:25.069 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 23 29:22:31.163 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 23 29:23:09.370 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 24 of 3200000 reads. 29:23:34.520 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 24 29:23:40.571 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 24 29:24:18.230 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 25 of 3200000 reads. 29:24:43.172 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 25 29:24:49.202 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 25 29:25:27.810 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 26 of 3200000 reads. 29:25:53.870 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 26 29:25:59.959 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 26 29:26:39.022 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 27 of 3200000 reads. 29:27:04.675 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 27 29:27:11.230 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 27 29:27:48.412 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 28 of 3200000 reads. 29:28:13.243 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 28 29:28:20.324 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 28 29:28:57.766 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 29 of 3200000 reads. 29:29:22.226 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 29 29:29:28.200 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 29 29:30:06.280 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 30 of 3200000 reads. 29:30:31.194 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 30 29:30:37.113 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 30 29:31:16.460 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 31 of 3200000 reads. 29:31:42.743 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 31 29:31:48.682 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 31 29:32:26.710 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 32 of 3200000 reads. 29:32:52.021 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 32 29:32:57.950 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 32 29:33:37.421 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 33 of 3200000 reads. 29:34:02.719 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 33 29:34:08.672 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 33 29:34:46.662 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 34 of 3200000 reads. 29:35:11.878 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 34 29:35:17.999 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 34 29:35:57.628 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 35 of 3200000 reads. 29:36:22.571 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 35 29:36:28.980 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 35 29:37:07.207 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 36 of 3200000 reads. 29:37:34.022 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 36 29:37:40.600 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 36 29:38:20.724 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 37 of 3200000 reads. 29:38:45.843 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 37 29:38:52.520 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 37 29:39:30.826 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 38 of 3200000 reads. 29:39:57.297 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 38 29:40:04.057 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 38 29:40:45.119 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 39 of 3200000 reads. 29:41:12.089 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 39 29:41:19.186 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 39 29:41:57.440 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 40 of 3200000 reads. 29:42:22.120 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 40 29:42:28.234 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 40 29:43:08.355 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 41 of 3200000 reads. 29:43:33.292 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 41 29:43:39.247 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 41 29:44:17.070 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 42 of 3200000 reads. 29:44:43.065 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 42 29:44:49.017 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 42 29:45:29.083 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 43 of 3200000 reads. 29:45:55.375 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 43 29:46:01.334 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 43 29:46:40.190 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 44 of 3200000 reads. 29:47:04.678 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 44 29:47:10.721 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 44 29:47:51.399 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 45 of 3200000 reads. 29:48:16.553 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 45 29:48:22.623 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 45 29:49:01.598 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 46 of 3200000 reads. 29:49:27.263 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 46 29:49:33.366 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 46 29:50:13.417 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 47 of 3200000 reads. 29:50:38.026 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 47 29:50:44.331 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 47 29:51:23.777 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 48 of 3200000 reads. 29:51:48.387 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 48 29:51:55.434 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 48 29:52:35.357 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 49 of 3200000 reads. 29:53:00.543 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 49 29:53:06.521 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 49 29:53:44.876 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 50 of 3200000 reads. 29:54:10.807 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 50 29:54:16.754 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 50 29:54:56.784 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 51 of 3200000 reads. 29:55:23.341 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 51 29:55:29.388 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 51 29:56:10.072 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 52 of 3200000 reads. 29:56:37.273 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 52 29:56:43.331 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 52 29:57:23.380 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 53 of 3200000 reads. 29:57:48.311 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 53 29:57:54.283 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 53 29:58:34.985 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 54 of 3200000 reads. 29:59:00.495 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 54 29:59:06.457 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 54 29:59:47.184 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 55 of 3200000 reads. 30:00:12.946 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 55 30:00:19.127 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 55 30:00:58.322 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 56 of 3200000 reads. 30:01:23.691 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 56 30:01:29.870 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 56 30:02:10.271 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 57 of 3200000 reads. 30:02:35.634 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 57 30:02:42.315 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 57 30:03:21.159 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 58 of 3200000 reads. 30:03:47.426 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 58 30:03:54.682 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 58 30:04:33.644 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 59 of 3200000 reads. 30:04:58.799 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 59 30:05:04.794 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 59 30:05:44.837 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 60 of 3200000 reads. 30:06:10.099 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 60 30:06:16.001 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 60 30:06:54.842 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 61 of 3200000 reads. 30:07:20.389 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 61 30:07:26.289 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 61 30:08:06.726 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 62 of 3200000 reads. 30:08:32.933 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 62 30:08:38.991 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 62 30:09:18.468 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 63 of 3200000 reads. 30:09:45.490 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 63 30:09:51.512 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 63 30:10:32.413 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 64 of 3200000 reads. 30:11:00.105 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 64 30:11:06.184 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 64 30:11:44.054 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 65 of 3200000 reads. 30:12:09.803 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 65 30:12:15.940 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 65 30:12:57.247 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 66 of 3200000 reads. 30:13:24.485 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 66 30:13:30.847 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 66 30:14:09.024 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 67 of 3200000 reads. 30:14:35.593 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 67 30:14:42.045 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 67 30:15:23.103 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 68 of 3200000 reads. 30:15:48.614 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 68 30:15:55.504 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 68 30:16:34.213 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 69 of 3200000 reads. 30:17:00.654 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 69 30:17:07.849 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 69 30:17:49.140 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 70 of 3200000 reads. 30:18:15.525 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 70 30:18:21.601 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 70 30:18:59.805 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 71 of 3200000 reads. 30:19:25.915 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 71 30:19:31.870 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 71 30:20:12.699 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 72 of 3200000 reads. 30:20:38.467 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 72 30:20:44.439 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 72 30:21:23.950 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 73 of 3200000 reads. 30:21:51.502 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 73 30:21:57.469 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 73 30:22:37.851 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 74 of 3200000 reads. 30:23:04.371 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 74 30:23:10.419 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 74 30:23:50.619 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 75 of 3200000 reads. 30:24:18.413 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 75 30:24:24.595 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 75 30:25:05.442 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 76 of 3200000 reads. 30:25:30.686 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 76 30:25:37.306 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 76 30:26:17.642 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 77 of 3200000 reads. 30:26:44.438 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 77 30:26:51.331 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 77 30:27:32.426 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 78 of 3200000 reads. 30:27:58.684 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 78 30:28:05.925 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 78 30:28:46.153 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 79 of 3200000 reads. 30:29:11.885 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 79 30:29:17.927 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 79 30:29:59.083 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 80 of 3200000 reads. 30:30:25.125 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 80 30:30:31.317 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 80 30:31:12.327 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 81 of 3200000 reads. 30:31:39.592 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 81 30:31:45.736 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 81 30:32:26.763 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 82 of 3200000 reads. 30:32:52.350 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 82 30:32:58.319 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 82 30:33:39.755 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 83 of 3200000 reads. 30:34:05.778 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 83 30:34:11.758 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 83 30:34:52.431 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 84 of 3200000 reads. 30:35:19.278 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 84 30:35:25.423 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 84 30:36:05.566 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 85 of 3200000 reads. 30:36:32.644 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 85 30:36:38.795 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 85 30:37:20.660 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 86 of 3200000 reads. 30:37:46.912 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 86 30:37:53.119 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 86 30:38:33.211 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 87 of 3200000 reads. 30:39:00.862 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 87 30:39:07.198 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 87 30:39:48.978 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 88 of 3200000 reads. 30:40:14.197 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 88 30:40:20.912 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 88 30:41:01.565 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 89 of 3200000 reads. 30:41:27.921 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 89 30:41:35.276 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 89 30:42:18.065 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 90 of 3200000 reads. 30:42:45.540 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 90 30:42:51.767 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 90 30:43:31.632 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 91 of 3200000 reads. 30:43:57.436 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 91 30:44:03.479 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 91 30:44:45.188 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 92 of 3200000 reads. 30:45:11.105 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 92 30:45:17.024 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 92 30:45:57.143 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 93 of 3200000 reads. 30:46:23.520 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 93 30:46:29.560 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 93 30:47:10.308 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 94 of 3200000 reads. 30:47:36.767 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 94 30:47:42.841 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 94 30:48:23.384 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 95 of 3200000 reads. 30:48:49.022 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 95 30:48:55.257 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 95 30:49:36.209 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 96 of 3200000 reads. 30:50:02.168 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 96 30:50:08.417 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 96 30:50:48.793 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 97 of 3200000 reads. 30:51:15.002 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 97 30:51:21.586 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 97 30:52:03.229 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 98 of 3200000 reads. 30:52:29.672 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 98 30:52:36.871 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 98 30:53:17.670 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 99 of 3200000 reads. 30:53:44.521 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 99 30:53:51.432 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 99 30:54:33.130 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 100 of 3200000 reads. 30:55:01.026 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 100 30:55:07.431 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 100 30:55:46.316 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 101 of 3200000 reads. 30:56:11.942 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 101 30:56:17.888 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 101 30:56:57.976 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 102 of 3200000 reads. 30:57:25.071 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 102 30:57:31.063 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 102 30:58:07.248 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 103 of 2093405 reads. 30:58:25.665 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 103 30:58:29.554 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 103 30:58:32.596 80G / 97G INFO General (hammer_tools.cpp : 233) Correcting pair of reads: /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_1.fastq and /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_2.fastq 30:58:55.574 82G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 0 of 3200000 reads. 30:59:02.054 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 0 30:59:05.756 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 0 30:59:19.788 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 1 of 3200000 reads. 30:59:26.454 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 1 30:59:30.534 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 1 30:59:50.103 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 2 of 3200000 reads. 30:59:56.669 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 2 31:00:00.643 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 2 31:00:10.730 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 3 of 3200000 reads. 31:00:17.324 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 3 31:00:21.183 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 3 31:00:57.275 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 4 of 3200000 reads. 31:01:03.875 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 4 31:01:07.823 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 4 31:01:18.393 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 5 of 3200000 reads. 31:01:24.702 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 5 31:01:28.669 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 5 31:02:02.429 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 6 of 3200000 reads. 31:02:08.876 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 6 31:02:12.745 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 6 31:02:22.158 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 7 of 3200000 reads. 31:02:28.900 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 7 31:02:33.190 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 7 31:03:06.389 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 8 of 3200000 reads. 31:03:12.607 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 8 31:03:16.426 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 8 31:03:26.268 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 9 of 3200000 reads. 31:03:32.521 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 9 31:03:36.497 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 9 31:04:10.088 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 10 of 3200000 reads. 31:04:16.664 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 10 31:04:21.233 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 10 31:04:30.839 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 11 of 3200000 reads. 31:04:37.164 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 11 31:04:41.142 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 11 31:05:10.331 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 12 of 3200000 reads. 31:05:16.789 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 12 31:05:20.637 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 12 31:05:30.234 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 13 of 3200000 reads. 31:05:37.122 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 13 31:05:41.094 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 13 31:06:12.333 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 14 of 3200000 reads. 31:06:18.754 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 14 31:06:22.603 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 14 31:06:32.063 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 15 of 3200000 reads. 31:06:38.484 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 15 31:06:42.385 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 15 31:07:11.166 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 16 of 3200000 reads. 31:07:17.882 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 16 31:07:21.718 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 16 31:07:31.584 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 17 of 3200000 reads. 31:07:37.982 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 17 31:07:42.206 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 17 31:08:14.556 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 18 of 3200000 reads. 31:08:20.856 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 18 31:08:24.665 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 18 31:08:34.348 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 19 of 3200000 reads. 31:08:40.730 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 19 31:08:44.893 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 19 31:09:15.123 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 20 of 3200000 reads. 31:09:22.052 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 20 31:09:26.027 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 20 31:09:35.740 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 21 of 3200000 reads. 31:09:42.101 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 21 31:09:45.933 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 21 31:10:21.821 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 22 of 3200000 reads. 31:10:28.048 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 22 31:10:31.849 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 22 31:10:42.922 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 23 of 3200000 reads. 31:10:49.488 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 23 31:10:53.340 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 23 31:11:20.111 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 24 of 3200000 reads. 31:11:26.697 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 24 31:11:30.526 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 24 31:11:40.559 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 25 of 3200000 reads. 31:11:47.137 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 25 31:11:51.413 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 25 31:12:25.322 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 26 of 3200000 reads. 31:12:31.762 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 26 31:12:35.599 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 26 31:12:45.656 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 27 of 3200000 reads. 31:12:52.125 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 27 31:12:55.987 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 27 31:13:25.983 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 28 of 3200000 reads. 31:13:32.662 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 28 31:13:36.669 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 28 31:13:46.214 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 29 of 3200000 reads. 31:13:52.755 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 29 31:13:56.679 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 29 31:14:32.473 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 30 of 3200000 reads. 31:14:39.135 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 30 31:14:42.983 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 30 31:14:53.792 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 31 of 3200000 reads. 31:15:00.428 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 31 31:15:04.350 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 31 31:15:27.518 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 32 of 3200000 reads. 31:15:34.236 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 32 31:15:38.101 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 32 31:15:47.681 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 33 of 3200000 reads. 31:15:54.106 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 33 31:15:57.926 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 33 31:16:33.590 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 34 of 3200000 reads. 31:16:40.170 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 34 31:16:44.000 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 34 31:16:54.864 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 35 of 3200000 reads. 31:17:01.297 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 35 31:17:05.484 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 35 31:17:30.147 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 36 of 3200000 reads. 31:17:36.637 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 36 31:17:40.572 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 36 31:17:50.269 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 37 of 3200000 reads. 31:17:56.742 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 37 31:18:00.554 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 37 31:18:38.338 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 38 of 3200000 reads. 31:18:44.653 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 38 31:18:48.519 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 38 31:18:57.909 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 39 of 3200000 reads. 31:19:04.779 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 39 31:19:09.657 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 39 31:19:38.772 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 40 of 3200000 reads. 31:19:45.205 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 40 31:19:49.041 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 40 31:19:58.648 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 41 of 3200000 reads. 31:20:05.289 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 41 31:20:09.166 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 41 31:20:46.445 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 42 of 3200000 reads. 31:20:53.078 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 42 31:20:56.964 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 42 31:21:08.251 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 43 of 3200000 reads. 31:21:14.581 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 43 31:21:18.430 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 43 31:21:45.278 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 44 of 3200000 reads. 31:21:51.798 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 44 31:21:55.830 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 44 31:22:05.757 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 45 of 3200000 reads. 31:22:12.529 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 45 31:22:16.429 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 45 31:22:48.622 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 46 of 3200000 reads. 31:22:55.363 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 46 31:22:59.195 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 46 31:23:08.839 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 47 of 3200000 reads. 31:23:15.490 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 47 31:23:19.501 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 47 31:23:31.357 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 48 of 457033 reads. 31:23:32.359 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 48 31:23:32.929 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 48 31:23:35.051 80G / 97G INFO General (hammer_tools.cpp : 233) Correcting pair of reads: /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_1.fastq and /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_2.fastq 31:24:00.759 82G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 0 of 3200000 reads. 31:24:12.210 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 0 31:24:17.043 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 0 31:24:46.474 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 1 of 3200000 reads. 31:24:58.080 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 1 31:25:02.314 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 1 31:25:30.614 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 2 of 3200000 reads. 31:25:42.669 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 2 31:25:47.753 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 2 31:26:18.015 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 3 of 3200000 reads. 31:26:29.692 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 3 31:26:34.011 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 3 31:27:03.431 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 4 of 3200000 reads. 31:27:15.117 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 4 31:27:19.787 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 4 31:27:50.234 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 5 of 3200000 reads. 31:28:01.766 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 5 31:28:06.029 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 5 31:28:34.664 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 6 of 3200000 reads. 31:28:46.422 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 6 31:28:51.115 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 6 31:29:21.711 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 7 of 3200000 reads. 31:29:33.108 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 7 31:29:37.312 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 7 31:29:58.508 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 8 of 3200000 reads. 31:30:10.143 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 8 31:30:14.392 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 8 31:30:27.192 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 9 of 3200000 reads. 31:30:39.017 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 9 31:30:43.950 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 9 31:31:20.482 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 10 of 3200000 reads. 31:31:34.527 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 10 31:31:38.812 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 10 31:32:09.922 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 11 of 3200000 reads. 31:32:24.602 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 11 31:32:28.863 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 11 31:32:57.608 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 12 of 3200000 reads. 31:33:13.370 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 12 31:33:18.168 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 12 31:33:48.675 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 13 of 3200000 reads. 31:34:01.041 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 13 31:34:05.240 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 13 31:34:36.423 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 14 of 3200000 reads. 31:34:49.164 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 14 31:34:54.187 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 14 31:35:24.114 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 15 of 3200000 reads. 31:35:35.620 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 15 31:35:39.870 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 15 31:36:09.748 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 16 of 3200000 reads. 31:36:21.561 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 16 31:36:26.131 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 16 31:36:58.078 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 17 of 3200000 reads. 31:37:09.947 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 17 31:37:14.165 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 17 31:37:42.966 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 18 of 3200000 reads. 31:37:55.051 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 18 31:37:59.298 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 18 31:38:13.712 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 19 of 3200000 reads. 31:38:25.494 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 19 31:38:29.814 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 19 31:38:58.082 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 20 of 3200000 reads. 31:39:09.578 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 20 31:39:13.772 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 20 31:39:44.538 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 21 of 3200000 reads. 31:39:55.862 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 21 31:40:00.253 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 21 31:40:30.195 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 22 of 3200000 reads. 31:40:41.497 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 22 31:40:45.755 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 22 31:41:17.257 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 23 of 3200000 reads. 31:41:28.659 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 23 31:41:32.867 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 23 31:42:01.125 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 24 of 3200000 reads. 31:42:12.485 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 24 31:42:16.714 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 24 31:42:30.838 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 25 of 3200000 reads. 31:42:42.088 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 25 31:42:46.486 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 25 31:43:18.513 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 26 of 3200000 reads. 31:43:29.741 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 26 31:43:33.998 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 26 31:44:03.745 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 27 of 3200000 reads. 31:44:15.323 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 27 31:44:19.663 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 27 31:44:51.783 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 28 of 3200000 reads. 31:45:02.890 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 28 31:45:07.153 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 28 31:45:37.611 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 29 of 3200000 reads. 31:45:49.219 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 29 31:45:53.871 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 29 31:46:19.516 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 30 of 3200000 reads. 31:46:31.400 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 30 31:46:35.673 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 30 31:46:50.608 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 31 of 3200000 reads. 31:47:04.586 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 31 31:47:09.448 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 31 31:47:38.437 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 32 of 3200000 reads. 31:47:52.117 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 32 31:47:56.420 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 32 31:48:26.194 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 33 of 3200000 reads. 31:48:41.022 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 33 31:48:45.417 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 33 31:49:17.148 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 34 of 3200000 reads. 31:49:28.448 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 34 31:49:32.677 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 34 31:50:04.702 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 35 of 3200000 reads. 31:50:16.951 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 35 31:50:21.551 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 35 31:50:53.527 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 36 of 3200000 reads. 31:51:05.134 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 36 31:51:09.615 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 36 31:51:40.283 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 37 of 3200000 reads. 31:51:51.831 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 37 31:51:56.555 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 37 31:52:26.309 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 38 of 3200000 reads. 31:52:37.199 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 38 31:52:41.422 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 38 31:52:58.805 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 39 of 3200000 reads. 31:53:10.366 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 39 31:53:14.611 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 39 31:53:28.170 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 40 of 3200000 reads. 31:53:39.414 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 40 31:53:43.671 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 40 31:54:27.571 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 41 of 3200000 reads. 31:54:39.461 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 41 31:54:43.705 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 41 31:55:13.844 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 42 of 3200000 reads. 31:55:25.078 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 42 31:55:29.327 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 42 31:56:00.063 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 43 of 3200000 reads. 31:56:11.488 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 43 31:56:15.718 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 43 31:56:47.035 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 44 of 3200000 reads. 31:56:58.221 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 44 31:57:02.480 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 44 31:57:17.861 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 45 of 3200000 reads. 31:57:29.728 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 45 31:57:34.017 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 45 31:58:03.960 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 46 of 3200000 reads. 31:58:15.457 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 46 31:58:19.972 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 46 31:58:52.334 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 47 of 3200000 reads. 31:59:03.730 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 47 31:59:07.978 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 47 31:59:41.603 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 48 of 3200000 reads. 31:59:52.926 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 48 31:59:57.146 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 48 32:00:29.781 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 49 of 3200000 reads. 32:00:41.396 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 49 32:00:45.669 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 49 32:01:18.199 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 50 of 3200000 reads. 32:01:29.382 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 50 32:01:33.661 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 50 32:02:06.738 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 51 of 3200000 reads. 32:02:18.034 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 51 32:02:22.307 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 51 32:02:54.329 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 52 of 3200000 reads. 32:03:07.034 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 52 32:03:11.258 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 52 32:03:43.519 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 53 of 3200000 reads. 32:03:59.291 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 53 32:04:03.915 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 53 32:04:36.182 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 54 of 3200000 reads. 32:04:50.314 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 54 32:04:54.554 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 54 32:05:26.425 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 55 of 3200000 reads. 32:05:41.173 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 55 32:05:46.162 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 55 32:06:17.388 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 56 of 3200000 reads. 32:06:29.640 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 56 32:06:33.879 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 56 32:07:06.549 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 57 of 3200000 reads. 32:07:18.920 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 57 32:07:23.742 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 57 32:07:56.167 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 58 of 3200000 reads. 32:08:07.315 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 58 32:08:11.497 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 58 32:08:43.137 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 59 of 3200000 reads. 32:08:54.868 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 59 32:08:59.480 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 59 32:09:32.495 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 60 of 3200000 reads. 32:09:43.894 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 60 32:09:48.162 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 60 32:10:21.908 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 61 of 3200000 reads. 32:10:33.466 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 61 32:10:37.698 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 61 32:11:10.993 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 62 of 3200000 reads. 32:11:22.514 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 62 32:11:26.773 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 62 32:11:30.215 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 63 of 599692 reads. 32:11:32.565 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 63 32:11:33.371 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 63 32:11:35.359 80G / 97G INFO General (hammer_tools.cpp : 274) Correction done. Changed 74689591 bases in 55263781 reads. 32:11:35.359 80G / 97G INFO General (hammer_tools.cpp : 275) Failed to correct 0 bases out of 135963462477. 32:11:43.933 128M / 97G INFO General (main.cpp : 255) Saving corrected dataset description to /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/corrected.yaml 32:11:43.939 128M / 97G INFO General (main.cpp : 262) All done. Exiting. == Compressing corrected reads (with pigz) == Dataset description file was created: /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/corrected.yaml ===== Read error correction finished. * Corrected reads are in /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/ ======= SPAdes pipeline finished. SPAdes log can be found here: /DATA/markop/Pcitri_rnaspades_alldata/input/spades.log Thank you for using SPAdes!